Wall clock time and date at job start Tue Mar 31 2020 15:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31603 * 1 3 3 Si 1.86800 * 119.99751 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99758 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99762 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00007 * 3 2 1 7 7 C 1.38731 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00148 * 179.97438 * 9 7 2 11 11 N 1.32332 * 119.73604 * 359.72623 * 10 9 7 12 12 C 1.32660 * 121.63657 * 179.74950 * 11 10 9 13 13 C 1.48265 * 119.54667 * 180.24423 * 12 11 10 14 14 C 1.39400 * 120.12883 * 179.97438 * 13 12 11 15 15 C 1.37998 * 119.87181 * 179.74253 * 14 13 12 16 16 C 1.38334 * 120.12965 * 0.51805 * 15 14 13 17 17 C 1.38332 * 120.25083 * 359.76029 * 16 15 14 18 18 C 1.37995 * 120.13113 * 359.97438 * 17 16 15 19 19 C 1.39449 * 120.90498 * 0.52854 * 12 11 10 20 20 C 1.38289 * 119.37828 * 359.74074 * 19 12 11 21 21 C 1.39639 * 118.49531 * 359.97438 * 20 19 12 22 22 C 1.48242 * 120.47205 * 180.02562 * 21 20 19 23 23 N 1.34129 * 126.68947 * 179.66840 * 22 21 20 24 24 N 1.28978 * 107.25877 * 179.83825 * 23 22 21 25 25 N 1.28723 * 108.97242 * 0.42919 * 24 23 22 26 26 H 0.97000 * 125.32881 * 179.75682 * 25 24 23 27 27 N 1.28869 * 109.34023 * 359.72959 * 25 24 23 28 28 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.05888 * 0.02562 * 14 13 12 30 30 H 1.08007 * 119.93580 * 180.27982 * 15 14 13 31 31 H 1.07997 * 119.87077 * 179.74038 * 16 15 14 32 32 H 1.08005 * 119.93389 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.06685 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.30903 * 179.76604 * 19 12 11 35 35 H 1.08000 * 120.75370 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0098 -1.2014 0.0005 8 1 3.0898 -1.2014 0.0001 9 16 1.1288 -2.7274 0.0005 10 6 2.4785 -3.8599 0.0005 11 7 3.7200 -3.4016 -0.0050 12 6 4.7639 -4.2201 -0.0002 13 6 6.1351 -3.6562 -0.0012 14 6 7.2408 -4.5052 0.0042 15 6 8.5147 -3.9746 -0.0021 16 6 8.6958 -2.6032 -0.0031 17 6 7.6023 -1.7559 -0.0027 18 6 6.3237 -2.2750 -0.0019 19 6 4.5893 -5.6037 -0.0003 20 6 3.3088 -6.1258 0.0002 21 6 2.2285 -5.2410 0.0012 22 6 0.8373 -5.7531 0.0022 23 7 -0.2862 -5.0206 0.0094 24 7 -1.2795 -5.8434 0.0042 25 7 -0.8252 -7.0478 0.0032 26 1 -1.3677 -7.8519 0.0029 27 7 0.4631 -7.0180 0.0020 28 1 -0.4850 0.8400 -0.0004 29 1 7.1006 -5.5761 0.0088 30 1 9.3721 -4.6314 -0.0025 31 1 9.6946 -2.1925 -0.0038 32 1 7.7495 -0.6859 -0.0038 33 1 5.4707 -1.6125 -0.0020 34 1 5.4461 -6.2612 -0.0002 35 1 3.1479 -7.1938 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737697619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:12 Heat of formation + Delta-G solvation = 161.869176 kcal Electronic energy + Delta-G solvation = -23362.230882 eV Core-core repulsion = 19874.399337 eV Total energy + Delta-G solvation = -3487.831545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.30909 -41.10287 -39.47181 -35.57461 -34.86036 -34.64787 -33.40129 -32.86033 -31.69459 -30.16688 -27.79337 -25.99617 -25.82293 -24.57789 -23.54614 -22.77104 -22.09187 -20.32745 -19.69127 -18.45878 -18.01789 -17.56353 -17.29333 -16.90091 -16.88190 -15.87510 -15.39519 -15.25596 -15.08470 -15.02918 -14.63346 -14.25359 -14.04346 -13.64908 -13.56274 -13.11499 -13.01443 -12.98408 -12.67742 -12.36860 -12.17251 -12.10666 -12.10002 -11.89617 -11.85196 -11.44379 -10.80691 -10.50324 -10.43024 -10.22290 -9.80402 -9.30403 -8.53467 -8.43339 -6.17919 -0.62265 0.20307 0.37748 0.55520 0.63669 1.25672 1.36828 1.41043 1.49889 1.53074 1.56282 2.15279 2.70659 2.73836 2.95680 3.03837 3.20702 3.28757 3.53831 3.90359 4.11655 4.18910 4.23911 4.27483 4.34385 4.48511 4.55214 4.62656 4.70169 4.76038 4.98749 5.14141 5.20619 5.25031 5.52313 5.56370 5.63791 5.70420 5.75703 5.80177 6.12778 6.34364 7.01717 7.07470 7.27608 8.64071 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.008428 B = 0.005859 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.353387 B = 4777.947374 C = 8089.454038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.571 4.571 8 H 0.094 0.906 9 S 0.125 5.875 10 C 0.115 3.885 11 N -0.507 5.507 12 C 0.181 3.819 13 C -0.070 4.070 14 C -0.093 4.093 15 C -0.121 4.121 16 C -0.106 4.106 17 C -0.138 4.138 18 C -0.108 4.108 19 C -0.196 4.196 20 C -0.002 4.002 21 C -0.115 4.115 22 C 0.216 3.784 23 N -0.286 5.286 24 N -0.067 5.067 25 N -0.198 5.198 26 H 0.494 0.506 27 N -0.287 5.287 28 H 0.276 0.724 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.182 0.818 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.760 -15.669 0.001 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.720 4.720 8 H 0.112 0.888 9 S 0.379 5.621 10 C -0.136 4.136 11 N -0.220 5.220 12 C 0.037 3.963 13 C -0.071 4.071 14 C -0.112 4.112 15 C -0.139 4.139 16 C -0.124 4.124 17 C -0.156 4.156 18 C -0.127 4.127 19 C -0.222 4.222 20 C -0.031 4.031 21 C -0.132 4.132 22 C -0.063 4.063 23 N -0.157 5.157 24 N -0.062 5.062 25 N -0.049 5.049 26 H 0.353 0.647 27 N -0.141 5.141 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.199 0.801 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.541 -14.529 0.003 17.950 hybrid contribution 0.851 0.364 -0.010 0.926 sum 11.392 -14.165 -0.007 18.178 Atomic orbital electron populations 1.70092 1.07487 1.29065 1.47472 1.26015 0.95866 1.02967 0.93189 0.85131 0.78465 0.76656 0.78921 1.19234 1.19557 1.18904 1.23878 0.97576 0.93034 1.57479 0.88763 1.84473 1.01869 0.95450 1.80285 1.24147 0.97326 0.95407 0.96681 1.68155 0.97944 1.38990 1.16953 1.20533 0.92044 0.91254 0.92480 1.18756 0.90594 0.93738 1.03985 1.21567 0.91133 1.00670 0.97839 1.21503 0.97305 0.95589 0.99503 1.21645 0.99302 0.93950 0.97535 1.21342 0.92027 1.01064 1.01157 1.21404 0.97909 0.95243 0.98138 1.22070 0.98566 0.94330 1.07237 1.21623 0.90043 1.00457 0.90929 1.17839 0.88167 0.92180 1.14981 1.23412 0.95094 0.85625 1.02173 1.76372 0.96114 1.24984 1.18260 1.78916 1.22737 0.88851 1.15715 1.47742 1.03196 1.10161 1.43809 0.64732 1.74776 0.95652 1.20586 1.23067 0.91519 0.82419 0.81865 0.82854 0.85080 0.88406 0.80108 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.94 13.22 21.63 0.29 -54.65 16 2 C 0.02 1.44 5.49 84.85 0.47 1.91 16 3 Si 0.99 45.67 29.55 68.60 2.03 47.70 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.57 -34.26 9.25 67.94 0.63 -33.63 16 8 H 0.09 5.67 6.54 -2.91 -0.02 5.65 16 9 S 0.12 7.00 18.69 -56.49 -1.06 5.95 16 10 C 0.12 5.56 6.99 85.13 0.60 6.15 16 11 N -0.51 -23.78 7.49 -180.31 -1.35 -25.13 16 12 C 0.18 6.67 6.73 41.98 0.28 6.95 16 13 C -0.07 -2.23 5.88 -20.05 -0.12 -2.34 16 14 C -0.09 -2.02 9.41 22.49 0.21 -1.81 16 15 C -0.12 -2.12 10.03 22.24 0.22 -1.90 16 16 C -0.11 -2.07 10.04 22.32 0.22 -1.84 16 17 C -0.14 -3.67 10.03 22.23 0.22 -3.45 16 18 C -0.11 -3.74 9.57 22.49 0.22 -3.53 16 19 C -0.20 -5.47 9.44 22.57 0.21 -5.26 16 20 C 0.00 -0.07 9.81 22.62 0.22 0.15 16 21 C -0.11 -4.55 5.92 -19.76 -0.12 -4.67 16 22 C 0.22 8.23 7.84 137.26 1.08 9.31 16 23 N -0.29 -12.16 9.71 -52.25 -0.51 -12.66 16 24 N -0.07 -2.27 13.47 37.02 0.50 -1.77 16 25 N -0.20 -4.71 7.90 37.02 0.29 -4.41 16 26 H 0.49 5.57 8.96 -347.53 -3.12 2.45 16 27 N -0.29 -8.24 12.15 -52.20 -0.63 -8.87 16 28 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.16 2.30 6.16 -2.91 -0.02 2.28 16 30 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.10 4.15 7.53 -2.91 -0.02 4.13 16 34 H 0.18 3.14 6.16 -2.91 -0.02 3.12 16 35 H 0.18 3.73 7.95 -2.91 -0.02 3.70 16 Total: -1.00 -80.88 325.72 1.97 -78.91 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -1.94 Total: 8.89 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 4.35 Total: -33.95 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -1.41 Total: -107.50 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -1.06 Total: 5.95 kcal Total: -80.88 1.97 -78.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.783 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds