Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38487 * 120.01257 * 2 1 4 4 F 1.35099 * 120.02366 * 359.97438 * 3 2 1 5 5 C 1.38439 * 119.94866 * 180.25551 * 3 2 1 6 6 C 1.38219 * 119.97143 * 359.44693 * 5 3 2 7 7 C 1.38221 * 120.02865 * 0.55126 * 6 5 3 8 8 C 1.38178 * 120.01370 * 179.97438 * 2 1 3 9 9 S 1.76194 * 119.98592 * 0.02562 * 8 2 1 10 10 O 1.42102 * 106.40174 * 176.93891 * 9 8 2 11 11 O 1.42109 * 106.40080 * 309.84977 * 9 8 2 12 12 N 1.65590 * 107.22395 * 63.39240 * 9 8 2 13 13 C 1.40575 * 119.99842 * 63.80468 * 12 9 8 14 14 C 1.40656 * 126.07506 * 45.43388 * 13 12 9 15 15 N 1.30931 * 108.39984 * 180.02562 * 14 13 12 16 16 N 1.40072 * 108.40523 * 359.97438 * 15 14 13 17 17 C 1.37309 * 126.08148 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00571 * 179.97438 * 17 16 15 19 19 C 1.38985 * 119.99621 * 359.97438 * 17 16 15 20 20 N 1.31296 * 120.00344 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47315 * 59.99890 * 21 19 17 23 23 H 1.48499 * 109.47038 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46788 * 299.99807 * 21 19 17 25 25 C 1.35639 * 126.07467 * 225.12887 * 13 12 9 26 26 H 1.09001 * 109.47261 * 86.94991 * 1 2 3 27 27 H 1.09004 * 109.47477 * 206.95051 * 1 2 3 28 28 H 1.08998 * 109.47340 * 326.95133 * 1 2 3 29 29 H 1.07994 * 120.01178 * 179.70678 * 5 3 2 30 30 H 1.08009 * 119.98432 * 180.26062 * 6 5 3 31 31 H 1.08000 * 119.97710 * 179.69910 * 7 6 5 32 32 H 0.97005 * 120.00790 * 243.80718 * 12 9 8 33 33 H 1.07993 * 125.79926 * 359.96548 * 14 13 12 34 34 H 0.97005 * 120.00206 * 179.97438 * 20 19 17 35 35 H 1.08004 * 126.25039 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1996 1.1992 0.0000 4 9 1.5249 2.3696 -0.0005 5 6 3.5840 1.1976 -0.0053 6 6 4.2732 -0.0004 0.0009 7 6 3.5808 -1.1967 0.0009 8 6 2.1981 -1.1965 0.0005 9 16 1.3171 -2.7224 0.0005 10 8 2.2954 -3.7505 -0.0717 11 8 0.3596 -2.6329 1.0468 12 7 0.4590 -2.7931 -1.4139 13 6 1.1359 -2.8315 -2.6454 14 6 2.2469 -3.6365 -2.9552 15 7 2.5988 -3.3965 -4.1933 16 7 1.7297 -2.4332 -4.7213 17 6 1.7711 -1.9171 -5.9930 18 1 1.0486 -1.1748 -6.2983 19 6 2.7429 -2.3500 -6.8873 20 7 3.6217 -3.2521 -6.5160 21 14 2.7988 -1.6484 -8.6177 22 1 3.0028 -0.1791 -8.5497 23 1 3.9194 -2.2701 -9.3679 24 1 1.5182 -1.9388 -9.3111 25 6 0.8299 -2.1030 -3.7479 26 1 -0.3634 0.0547 -1.0262 27 1 -0.3634 -0.9161 0.4658 28 1 -0.3634 0.8614 0.5604 29 1 4.1252 2.1322 -0.0101 30 1 5.3533 -0.0019 0.0010 31 1 4.1202 -2.1324 0.0009 32 1 -0.5107 -2.8081 -1.3928 33 1 2.7286 -4.3332 -2.2852 34 1 4.2997 -3.5546 -7.1404 35 1 0.0237 -1.3901 -3.8389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743256592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -8.179063 kcal Electronic energy + Delta-G solvation = -25487.249397 eV Core-core repulsion = 21528.982031 eV Total energy + Delta-G solvation = -3958.267366 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.94719 -39.62901 -39.11409 -37.04913 -35.60372 -34.65618 -33.22447 -32.88435 -30.80638 -30.34913 -27.50230 -27.09051 -24.87258 -23.45075 -21.88028 -20.82579 -20.07312 -19.30039 -18.29014 -17.51280 -17.01643 -16.74584 -15.90214 -15.77503 -15.71216 -15.60997 -15.45594 -14.66097 -14.00653 -13.64291 -13.59597 -13.38806 -13.34134 -13.12789 -12.69803 -12.34184 -12.22522 -12.08875 -11.85828 -11.77678 -11.73647 -11.66233 -11.35839 -11.26564 -10.97149 -10.65162 -10.54704 -10.14103 -9.42576 -9.36055 -8.89310 -8.68678 -8.24215 -7.11913 -6.67328 -4.38127 0.55586 0.81869 1.09416 2.89580 2.98503 3.02718 3.15107 3.38416 3.43048 3.75960 3.95118 4.03996 4.16578 4.47631 4.61600 4.68040 4.75500 4.90476 4.95464 5.21513 5.39664 5.49059 5.56607 5.79202 5.95274 6.01232 6.04766 6.09310 6.15277 6.22938 6.36364 6.75961 6.78897 7.05075 7.22004 7.49923 7.73082 8.08786 8.55248 9.21977 9.47818 10.28127 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.004606 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.753083 B = 6078.176034 C = 6913.304341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.009 4.009 3 C 0.069 3.931 4 F -0.137 7.137 5 C -0.100 4.100 6 C -0.120 4.120 7 C -0.020 4.020 8 C -0.641 4.641 9 S 2.691 3.309 10 O -0.950 6.950 11 O -0.972 6.972 12 N -1.008 6.008 13 C -0.066 4.066 14 C -0.039 4.039 15 N -0.252 5.252 16 N -0.140 5.140 17 C -0.323 4.323 18 H 0.118 0.882 19 C 0.048 3.952 20 N -0.768 5.768 21 Si 0.935 3.065 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.059 4.059 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.412 0.588 33 H 0.170 0.830 34 H 0.277 0.723 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 6.942 9.347 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 C 0.049 3.951 4 F -0.116 7.116 5 C -0.119 4.119 6 C -0.138 4.138 7 C -0.040 4.040 8 C -0.726 4.726 9 S 2.780 3.220 10 O -0.940 6.940 11 O -0.962 6.962 12 N -0.762 5.762 13 C -0.175 4.175 14 C -0.217 4.217 15 N -0.082 5.082 16 N 0.094 4.906 17 C -0.456 4.456 18 H 0.135 0.865 19 C -0.170 4.170 20 N -0.394 5.394 21 Si 0.758 3.242 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.212 4.212 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.248 0.752 33 H 0.187 0.813 34 H 0.088 0.912 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.907 5.955 9.019 10.846 hybrid contribution -0.780 1.627 -0.468 1.864 sum -1.688 7.582 8.551 11.552 Atomic orbital electron populations 1.21486 0.89700 1.06500 1.04542 1.19455 0.96654 0.90756 0.94207 1.17518 0.90237 0.80996 1.06336 1.91479 1.80362 1.45572 1.94184 1.21373 0.92299 1.00085 0.98108 1.21123 1.00646 0.91391 1.00684 1.21062 0.91981 0.99867 0.91050 1.30879 1.06401 1.19556 1.15745 1.02487 0.73298 0.73870 0.72320 1.93548 1.61349 1.53004 1.86063 1.93509 1.61028 1.87172 1.54455 1.52025 1.16794 1.88674 1.18677 1.16719 1.04422 1.09157 0.87196 1.24083 0.99519 1.02335 0.95751 1.78283 1.14528 1.08082 1.07274 1.44642 1.15396 1.22531 1.08032 1.19884 1.17177 1.23725 0.84777 0.86470 1.25647 0.94919 0.95627 1.00802 1.70184 1.11746 1.22018 1.35421 0.85890 0.78814 0.79432 0.80046 1.19113 1.20037 1.19053 1.21661 1.01397 1.07182 0.90962 0.88983 0.87917 0.89784 0.84287 0.84180 0.83206 0.75240 0.81272 0.91216 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.16 36.00 0.33 -1.83 16 2 C -0.01 -0.13 5.88 -104.56 -0.61 -0.74 16 3 C 0.07 0.99 7.24 -39.42 -0.29 0.71 16 4 F -0.14 -1.93 16.53 2.25 0.04 -1.89 16 5 C -0.10 -1.26 10.03 -39.51 -0.40 -1.66 16 6 C -0.12 -1.52 10.04 -39.59 -0.40 -1.92 16 7 C -0.02 -0.30 9.55 -39.58 -0.38 -0.68 16 8 C -0.64 -10.20 5.82 -39.59 -0.23 -10.43 16 9 S 2.69 44.48 4.94 -107.50 -0.53 43.95 16 10 O -0.95 -17.86 14.86 -57.17 -0.85 -18.71 16 11 O -0.97 -16.44 15.51 -57.17 -0.89 -17.32 16 12 N -1.01 -16.60 5.68 32.32 0.18 -16.42 16 13 C -0.07 -1.37 6.55 -83.86 -0.55 -1.91 16 14 C -0.04 -0.91 11.19 -17.02 -0.19 -1.10 16 15 N -0.25 -6.76 10.40 30.80 0.32 -6.44 16 16 N -0.14 -3.57 3.74 -11.40 -0.04 -3.62 16 17 C -0.32 -8.08 10.25 -14.82 -0.15 -8.24 16 18 H 0.12 2.62 7.83 -52.49 -0.41 2.21 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -20.32 11.81 55.49 0.66 -19.66 16 21 Si 0.93 18.08 29.55 -169.99 -5.02 13.06 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.06 -1.28 11.50 -16.36 -0.19 -1.47 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.35 4.82 -51.93 -0.25 1.10 16 28 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.15 2.10 7.34 -52.49 -0.39 1.72 16 32 H 0.41 5.51 8.96 -34.47 -0.31 5.20 16 33 H 0.17 3.80 6.83 -52.49 -0.36 3.44 16 34 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.15 2.71 8.06 -52.48 -0.42 2.29 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -31.72 321.18 -7.39 -39.11 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.94 Total: 11.31 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -3.15 Total: -28.20 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 1.12 Total: -46.14 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.74 Total: -36.04 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Atomic # 16 Polarization: 44.48 SS G_CDS: -0.53 Total: 43.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.72 -7.39 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743256592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.931 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds