Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38487 * 120.01257 * 2 1 4 4 F 1.35099 * 120.02366 * 359.97438 * 3 2 1 5 5 C 1.38439 * 119.94866 * 180.25551 * 3 2 1 6 6 C 1.38219 * 119.97143 * 359.44693 * 5 3 2 7 7 C 1.38221 * 120.02865 * 0.55126 * 6 5 3 8 8 C 1.38178 * 120.01370 * 179.97438 * 2 1 3 9 9 S 1.76194 * 119.98592 * 0.02562 * 8 2 1 10 10 O 1.42102 * 106.40174 * 176.93891 * 9 8 2 11 11 O 1.42109 * 106.40080 * 309.84977 * 9 8 2 12 12 N 1.65590 * 107.22395 * 63.39240 * 9 8 2 13 13 C 1.40575 * 119.99842 * 63.80468 * 12 9 8 14 14 C 1.40656 * 126.07506 * 45.43388 * 13 12 9 15 15 N 1.30931 * 108.39984 * 180.02562 * 14 13 12 16 16 N 1.40072 * 108.40523 * 359.97438 * 15 14 13 17 17 C 1.37309 * 126.08148 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00571 * 179.97438 * 17 16 15 19 19 C 1.38985 * 119.99621 * 359.97438 * 17 16 15 20 20 N 1.31296 * 120.00344 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47315 * 59.99890 * 21 19 17 23 23 H 1.48499 * 109.47038 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46788 * 299.99807 * 21 19 17 25 25 C 1.35639 * 126.07467 * 225.12887 * 13 12 9 26 26 H 1.09001 * 109.47261 * 86.94991 * 1 2 3 27 27 H 1.09004 * 109.47477 * 206.95051 * 1 2 3 28 28 H 1.08998 * 109.47340 * 326.95133 * 1 2 3 29 29 H 1.07994 * 120.01178 * 179.70678 * 5 3 2 30 30 H 1.08009 * 119.98432 * 180.26062 * 6 5 3 31 31 H 1.08000 * 119.97710 * 179.69910 * 7 6 5 32 32 H 0.97005 * 120.00790 * 243.80718 * 12 9 8 33 33 H 1.07993 * 125.79926 * 359.96548 * 14 13 12 34 34 H 0.97005 * 120.00206 * 179.97438 * 20 19 17 35 35 H 1.08004 * 126.25039 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1996 1.1992 0.0000 4 9 1.5249 2.3696 -0.0005 5 6 3.5840 1.1976 -0.0053 6 6 4.2732 -0.0004 0.0009 7 6 3.5808 -1.1967 0.0009 8 6 2.1981 -1.1965 0.0005 9 16 1.3171 -2.7224 0.0005 10 8 2.2954 -3.7505 -0.0717 11 8 0.3596 -2.6329 1.0468 12 7 0.4590 -2.7931 -1.4139 13 6 1.1359 -2.8315 -2.6454 14 6 2.2469 -3.6365 -2.9552 15 7 2.5988 -3.3965 -4.1933 16 7 1.7297 -2.4332 -4.7213 17 6 1.7711 -1.9171 -5.9930 18 1 1.0486 -1.1748 -6.2983 19 6 2.7429 -2.3500 -6.8873 20 7 3.6217 -3.2521 -6.5160 21 14 2.7988 -1.6484 -8.6177 22 1 3.0028 -0.1791 -8.5497 23 1 3.9194 -2.2701 -9.3679 24 1 1.5182 -1.9388 -9.3111 25 6 0.8299 -2.1030 -3.7479 26 1 -0.3634 0.0547 -1.0262 27 1 -0.3634 -0.9161 0.4658 28 1 -0.3634 0.8614 0.5604 29 1 4.1252 2.1322 -0.0101 30 1 5.3533 -0.0019 0.0010 31 1 4.1202 -2.1324 0.0009 32 1 -0.5107 -2.8081 -1.3928 33 1 2.7286 -4.3332 -2.2852 34 1 4.2997 -3.5546 -7.1404 35 1 0.0237 -1.3901 -3.8389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743256592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -29.281268 kcal Electronic energy + Delta-G solvation = -25488.164457 eV Core-core repulsion = 21528.982031 eV Total energy + Delta-G solvation = -3959.182426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02000 -41.42416 -40.19331 -38.44429 -37.01987 -36.25971 -34.86284 -34.02303 -32.19518 -31.89843 -29.23459 -28.13553 -26.67849 -24.56734 -22.95704 -22.63461 -21.71473 -20.72073 -19.75292 -18.86960 -18.48474 -17.97316 -17.40545 -17.01280 -16.94804 -16.86661 -16.80305 -16.08323 -15.59378 -15.24286 -14.89572 -14.67104 -14.60016 -14.41695 -13.86411 -13.75491 -13.48972 -13.47076 -13.29580 -13.22536 -13.16468 -12.91396 -12.84295 -12.68492 -12.53081 -12.14037 -11.88693 -11.59020 -11.15353 -10.68034 -10.45242 -10.11371 -9.77073 -8.84991 -8.46038 -6.26087 -0.71307 -0.36456 0.00787 1.32089 1.41844 1.56753 1.77174 1.83919 2.15751 2.22685 2.24019 2.63827 2.89477 3.07499 3.10198 3.38936 3.57727 3.70258 3.83425 4.15588 4.34678 4.39999 4.44992 4.57288 4.58250 4.71238 4.75644 4.93755 4.97177 5.00352 5.08381 5.10475 5.28356 5.46736 5.70992 5.93367 6.10565 6.36314 6.76973 7.43945 7.64581 8.52338 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.004606 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.753083 B = 6078.176034 C = 6913.304341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.022 4.022 3 C 0.055 3.945 4 F -0.136 7.136 5 C -0.093 4.093 6 C -0.118 4.118 7 C -0.040 4.040 8 C -0.659 4.659 9 S 2.711 3.289 10 O -0.976 6.976 11 O -0.974 6.974 12 N -1.002 6.002 13 C -0.043 4.043 14 C -0.056 4.056 15 N -0.298 5.298 16 N -0.166 5.166 17 C -0.355 4.355 18 H 0.138 0.862 19 C 0.000 4.000 20 N -0.820 5.820 21 Si 1.012 2.988 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.255 1.255 25 C -0.055 4.055 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.150 0.850 32 H 0.427 0.573 33 H 0.172 0.828 34 H 0.277 0.723 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 9.097 9.413 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 C 0.035 3.965 4 F -0.115 7.115 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.060 4.060 8 C -0.746 4.746 9 S 2.802 3.198 10 O -0.966 6.966 11 O -0.964 6.964 12 N -0.758 5.758 13 C -0.152 4.152 14 C -0.234 4.234 15 N -0.129 5.129 16 N 0.066 4.934 17 C -0.486 4.486 18 H 0.156 0.844 19 C -0.213 4.213 20 N -0.447 5.447 21 Si 0.832 3.168 22 H -0.180 1.180 23 H -0.202 1.202 24 H -0.179 1.179 25 C -0.208 4.208 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.190 0.810 30 H 0.191 0.809 31 H 0.168 0.832 32 H 0.266 0.734 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.599 8.093 9.093 12.277 hybrid contribution -0.626 1.009 -0.248 1.213 sum -2.225 9.102 8.845 12.885 Atomic orbital electron populations 1.21580 0.88584 1.07002 1.05471 1.19706 0.97733 0.90779 0.94155 1.17718 0.91057 0.80856 1.06833 1.91481 1.80455 1.45311 1.94221 1.21806 0.91842 1.01460 0.96013 1.21516 1.02324 0.90507 0.99321 1.21317 0.91969 1.01075 0.91623 1.30627 1.06895 1.19014 1.18093 1.01519 0.72780 0.73660 0.71797 1.93517 1.62103 1.54709 1.86312 1.93511 1.61285 1.87423 1.54151 1.51899 1.17753 1.88966 1.17172 1.16608 1.03061 1.07283 0.88246 1.24247 1.00767 1.03078 0.95304 1.78188 1.16349 1.09631 1.08692 1.44863 1.16333 1.23216 1.08953 1.20531 1.18250 1.24689 0.85115 0.84422 1.26744 0.94019 0.95480 1.05023 1.70347 1.13051 1.24243 1.37094 0.84743 0.78927 0.78854 0.74312 1.17994 1.20242 1.17933 1.22318 1.01215 1.06939 0.90294 0.87886 0.88277 0.88314 0.81003 0.80945 0.83239 0.73399 0.81108 0.91277 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 9.16 71.23 0.65 -3.44 16 2 C -0.02 -0.61 5.88 -19.82 -0.12 -0.73 16 3 C 0.06 1.47 7.24 22.38 0.16 1.63 16 4 F -0.14 -3.49 16.53 44.97 0.74 -2.74 16 5 C -0.09 -2.08 10.03 22.31 0.22 -1.86 16 6 C -0.12 -2.74 10.04 22.26 0.22 -2.52 16 7 C -0.04 -1.17 9.55 22.27 0.21 -0.96 16 8 C -0.66 -20.33 5.82 22.26 0.13 -20.20 16 9 S 2.71 87.81 4.94 -56.49 -0.28 87.53 16 10 O -0.98 -36.93 14.86 -128.00 -1.90 -38.83 16 11 O -0.97 -31.85 15.51 -128.00 -1.99 -33.84 16 12 N -1.00 -31.87 5.68 -51.64 -0.29 -32.17 16 13 C -0.04 -1.76 6.55 37.73 0.25 -1.51 16 14 C -0.06 -2.69 11.19 85.42 0.96 -1.74 16 15 N -0.30 -16.45 10.40 -56.45 -0.59 -17.04 16 16 N -0.17 -8.54 3.74 -189.98 -0.71 -9.25 16 17 C -0.35 -17.75 10.25 84.01 0.86 -16.89 16 18 H 0.14 6.00 7.83 -2.91 -0.02 5.98 16 19 C 0.00 -0.01 5.50 84.95 0.47 0.46 16 20 N -0.82 -44.73 11.81 21.66 0.26 -44.47 16 21 Si 1.01 36.83 29.55 68.60 2.03 38.85 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.28 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 25 C -0.05 -2.34 11.50 83.35 0.96 -1.38 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.10 2.43 4.82 -2.38 -0.01 2.42 16 28 H 0.10 2.04 7.73 -2.39 -0.02 2.02 16 29 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.15 4.21 7.34 -2.91 -0.02 4.19 16 32 H 0.43 10.69 8.96 -96.74 -0.87 9.83 16 33 H 0.17 7.94 6.83 -2.91 -0.02 7.92 16 34 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 35 H 0.18 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -69.72 321.18 2.55 -67.17 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.30 Total: 33.92 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 4.98 Total: -49.13 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -1.33 Total: -102.93 kcal Atomic # 8 Polarization: -68.78 SS G_CDS: -3.89 Total: -72.67 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.74 Total: -2.74 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 87.81 SS G_CDS: -0.28 Total: 87.53 kcal Total: -69.72 2.55 -67.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743256592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.893 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds