Wall clock time and date at job start Tue Mar 31 2020 14:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.99002 * 2 1 4 4 C 1.38229 * 120.05219 * 180.27970 * 3 2 1 5 5 C 1.38219 * 120.02137 * 359.44429 * 4 3 2 6 6 C 1.38429 * 119.97699 * 0.27806 * 5 4 3 7 7 F 1.35107 * 120.02608 * 180.02562 * 6 5 4 8 8 C 1.38179 * 119.98366 * 179.72481 * 2 1 3 9 9 S 1.76201 * 120.01686 * 359.97438 * 8 2 1 10 10 O 1.42095 * 106.40335 * 193.33965 * 9 8 2 11 11 O 1.42102 * 106.40120 * 326.26268 * 9 8 2 12 12 N 1.65603 * 107.21597 * 79.79741 * 9 8 2 13 13 C 1.40575 * 119.99707 * 66.21196 * 12 9 8 14 14 C 1.40650 * 126.07398 * 313.83269 * 13 12 9 15 15 N 1.30940 * 108.39771 * 179.88099 * 14 13 12 16 16 N 1.40063 * 108.40329 * 0.37909 * 15 14 13 17 17 C 1.37316 * 126.08238 * 179.71900 * 16 15 14 18 18 H 1.07995 * 120.00020 * 180.02562 * 17 16 15 19 19 C 1.38974 * 119.99490 * 0.04516 * 17 16 15 20 20 N 1.31301 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47110 * 60.00406 * 21 19 17 23 23 H 1.48508 * 109.47260 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47168 * 300.00136 * 21 19 17 25 25 C 1.35634 * 126.07228 * 134.14490 * 13 12 9 26 26 H 1.09008 * 109.46898 * 264.53919 * 1 2 3 27 27 H 1.08998 * 109.47083 * 24.53965 * 1 2 3 28 28 H 1.08999 * 109.47316 * 144.54586 * 1 2 3 29 29 H 1.07995 * 119.97624 * 0.02562 * 3 2 1 30 30 H 1.07994 * 119.98966 * 179.72801 * 4 3 2 31 31 H 1.08004 * 120.00667 * 180.25547 * 5 4 3 32 32 H 0.96999 * 120.00120 * 246.21183 * 12 9 8 33 33 H 1.07998 * 125.79955 * 0.03996 * 14 13 12 34 34 H 0.97009 * 119.99662 * 179.97438 * 20 19 17 35 35 H 1.08007 * 126.24971 * 359.92633 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 -0.0058 5 6 4.2733 0.0030 -0.0001 6 6 3.5824 -1.1965 0.0057 7 9 4.2587 -2.3661 0.0119 8 6 2.1976 -1.1968 0.0057 9 16 1.3166 -2.7228 0.0138 10 8 2.2647 -3.7319 0.3330 11 8 0.1345 -2.4997 0.7702 12 7 0.8282 -3.0150 -1.5414 13 6 1.7826 -3.2698 -2.5416 14 6 2.9638 -2.5395 -2.7646 15 7 3.5956 -3.0752 -3.7787 16 7 2.8417 -4.1587 -4.2470 17 6 3.1668 -4.9738 -5.3032 18 1 2.5102 -5.7848 -5.5815 19 6 4.3411 -4.7553 -6.0136 20 7 5.1398 -3.7698 -5.6747 21 14 4.7838 -5.8645 -7.4500 22 1 3.7197 -5.7854 -8.4828 23 1 6.0759 -5.4247 -8.0353 24 1 4.9081 -7.2655 -6.9735 25 6 1.7250 -4.2600 -3.4668 26 1 -0.3633 -0.0978 1.0231 27 1 -0.3633 0.9348 -0.4268 28 1 -0.3634 -0.8371 -0.5961 29 1 1.6576 2.1325 0.0004 30 1 4.1191 2.1350 -0.0103 31 1 5.3533 0.0045 -0.0005 32 1 -0.1163 -3.0103 -1.7622 33 1 3.2948 -1.6841 -2.1944 34 1 5.9597 -3.6176 -6.1704 35 1 0.9398 -4.9947 -3.5678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775276556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:06 Heat of formation + Delta-G solvation = -1.800441 kcal Electronic energy + Delta-G solvation = -25834.096724 eV Core-core repulsion = 21876.105956 eV Total energy + Delta-G solvation = -3957.990768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.81315 -39.60112 -39.23207 -36.91962 -35.50296 -34.58678 -33.10192 -32.89185 -30.91589 -30.26721 -27.45885 -27.19483 -24.85295 -23.37541 -21.93672 -20.82193 -20.07790 -19.19561 -18.02160 -17.42005 -16.92508 -16.77219 -16.65191 -15.79330 -15.51263 -15.26824 -14.98330 -14.48072 -13.91922 -13.75002 -13.68191 -13.37039 -13.31106 -13.09718 -12.50678 -12.48700 -12.09481 -11.99410 -11.79393 -11.73973 -11.64806 -11.56759 -11.39335 -11.21933 -10.95873 -10.62908 -10.56372 -10.13924 -9.43192 -9.35960 -8.88222 -8.69432 -8.20985 -7.04737 -6.61412 -4.32493 0.54212 0.82820 1.08790 2.94404 3.03104 3.07048 3.15911 3.38694 3.53022 3.80872 3.95520 4.11428 4.13842 4.43529 4.64233 4.66697 4.69125 4.97037 5.05675 5.19093 5.33658 5.45020 5.56262 5.74616 5.83866 5.95568 6.04948 6.08939 6.20182 6.27548 6.34582 6.72969 6.74006 7.07565 7.22554 7.51975 7.77919 8.09512 8.59652 9.28010 9.51110 10.34619 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.004374 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.291955 B = 6399.373106 C = 7033.022400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 C -0.162 4.162 4 C -0.033 4.033 5 C -0.187 4.187 6 C 0.212 3.788 7 F -0.101 7.101 8 C -0.719 4.719 9 S 2.698 3.302 10 O -0.939 6.939 11 O -0.968 6.968 12 N -1.016 6.016 13 C -0.051 4.051 14 C -0.058 4.058 15 N -0.244 5.244 16 N -0.139 5.139 17 C -0.322 4.322 18 H 0.119 0.881 19 C 0.047 3.953 20 N -0.771 5.771 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.056 4.056 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.410 0.590 33 H 0.145 0.855 34 H 0.276 0.724 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 9.177 7.966 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 C -0.181 4.181 4 C -0.052 4.052 5 C -0.206 4.206 6 C 0.190 3.810 7 F -0.078 7.078 8 C -0.805 4.805 9 S 2.785 3.215 10 O -0.929 6.929 11 O -0.958 6.958 12 N -0.770 5.770 13 C -0.159 4.159 14 C -0.235 4.235 15 N -0.075 5.075 16 N 0.093 4.907 17 C -0.455 4.455 18 H 0.136 0.864 19 C -0.170 4.170 20 N -0.398 5.398 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.208 4.208 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.245 0.755 33 H 0.162 0.838 34 H 0.087 0.913 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.454 8.792 7.942 12.658 hybrid contribution -0.365 0.041 -0.553 0.664 sum -4.818 8.833 7.389 12.484 Atomic orbital electron populations 1.21229 0.89442 1.03740 1.04819 1.19442 0.96219 0.90987 0.88741 1.21156 0.94365 0.97756 1.04803 1.21247 0.94253 0.97642 0.92020 1.21276 1.01435 0.91218 1.06703 1.17108 0.88309 0.82619 0.92921 1.91750 1.79368 1.44709 1.92002 1.30945 1.04398 1.22128 1.22991 1.01949 0.73504 0.73545 0.72465 1.93623 1.63213 1.54019 1.82000 1.93568 1.47046 1.86563 1.68595 1.52127 1.14042 1.86130 1.24729 1.16642 0.95968 1.03035 1.00251 1.23535 0.96589 1.02203 1.01179 1.78203 1.16775 1.00538 1.11972 1.44578 1.10429 1.17756 1.17923 1.19893 1.08008 1.11121 1.06453 0.86351 1.25646 0.95403 0.96865 0.99097 1.70193 1.09511 1.24554 1.35506 0.85869 0.78480 0.79837 0.79837 1.19112 1.20127 1.19045 1.21630 0.95901 1.03482 0.99765 0.88288 0.90260 0.90673 0.84662 0.84414 0.83825 0.75496 0.83765 0.91333 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.39 36.01 0.30 -1.23 16 2 C 0.05 0.64 5.87 -104.63 -0.61 0.02 16 3 C -0.16 -1.79 9.68 -39.58 -0.38 -2.18 16 4 C -0.03 -0.36 10.04 -39.59 -0.40 -0.76 16 5 C -0.19 -2.54 10.03 -39.52 -0.40 -2.94 16 6 C 0.21 3.63 5.04 -39.42 -0.20 3.43 16 7 F -0.10 -2.04 14.67 2.25 0.03 -2.01 16 8 C -0.72 -11.87 4.88 -39.51 -0.19 -12.06 16 9 S 2.70 48.73 4.91 -107.50 -0.53 48.20 16 10 O -0.94 -20.72 15.59 -57.17 -0.89 -21.61 16 11 O -0.97 -16.66 15.08 -57.17 -0.86 -17.52 16 12 N -1.02 -18.16 5.70 32.32 0.18 -17.97 16 13 C -0.05 -1.15 6.38 -83.87 -0.54 -1.68 16 14 C -0.06 -1.43 10.90 -17.02 -0.19 -1.61 16 15 N -0.24 -6.84 10.40 30.81 0.32 -6.52 16 16 N -0.14 -3.76 3.74 -11.40 -0.04 -3.80 16 17 C -0.32 -8.38 10.25 -14.82 -0.15 -8.54 16 18 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 19 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 20 N -0.77 -21.01 11.81 55.49 0.66 -20.36 16 21 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.06 -1.31 11.50 -16.36 -0.19 -1.50 16 26 H 0.10 1.07 7.84 -51.92 -0.41 0.66 16 27 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.07 0.89 6.22 -51.93 -0.32 0.57 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.41 5.87 8.96 -34.47 -0.31 5.56 16 33 H 0.15 3.23 4.87 -52.49 -0.26 2.98 16 34 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.15 3.00 8.06 -52.48 -0.42 2.58 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -34.43 315.52 -7.39 -41.81 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -2.95 Total: 9.37 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -3.04 Total: -27.94 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 1.12 Total: -48.65 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.75 Total: -39.13 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 48.73 SS G_CDS: -0.53 Total: 48.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.43 -7.39 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775276556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.012 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds