Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.99002 * 2 1 4 4 C 1.38229 * 120.05219 * 180.27970 * 3 2 1 5 5 C 1.38219 * 120.02137 * 359.44429 * 4 3 2 6 6 C 1.38429 * 119.97699 * 0.27806 * 5 4 3 7 7 F 1.35107 * 120.02608 * 180.02562 * 6 5 4 8 8 C 1.38179 * 119.98366 * 179.72481 * 2 1 3 9 9 S 1.76201 * 120.01686 * 359.97438 * 8 2 1 10 10 O 1.42095 * 106.40335 * 193.33965 * 9 8 2 11 11 O 1.42102 * 106.40120 * 326.26268 * 9 8 2 12 12 N 1.65603 * 107.21597 * 79.79741 * 9 8 2 13 13 C 1.40575 * 119.99707 * 66.21196 * 12 9 8 14 14 C 1.40650 * 126.07398 * 313.83269 * 13 12 9 15 15 N 1.30940 * 108.39771 * 179.88099 * 14 13 12 16 16 N 1.40063 * 108.40329 * 0.37909 * 15 14 13 17 17 C 1.37316 * 126.08238 * 179.71900 * 16 15 14 18 18 H 1.07995 * 120.00020 * 180.02562 * 17 16 15 19 19 C 1.38974 * 119.99490 * 0.04516 * 17 16 15 20 20 N 1.31301 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47110 * 60.00406 * 21 19 17 23 23 H 1.48508 * 109.47260 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47168 * 300.00136 * 21 19 17 25 25 C 1.35634 * 126.07228 * 134.14490 * 13 12 9 26 26 H 1.09008 * 109.46898 * 264.53919 * 1 2 3 27 27 H 1.08998 * 109.47083 * 24.53965 * 1 2 3 28 28 H 1.08999 * 109.47316 * 144.54586 * 1 2 3 29 29 H 1.07995 * 119.97624 * 0.02562 * 3 2 1 30 30 H 1.07994 * 119.98966 * 179.72801 * 4 3 2 31 31 H 1.08004 * 120.00667 * 180.25547 * 5 4 3 32 32 H 0.96999 * 120.00120 * 246.21183 * 12 9 8 33 33 H 1.07998 * 125.79955 * 0.03996 * 14 13 12 34 34 H 0.97009 * 119.99662 * 179.97438 * 20 19 17 35 35 H 1.08007 * 126.24971 * 359.92633 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 -0.0058 5 6 4.2733 0.0030 -0.0001 6 6 3.5824 -1.1965 0.0057 7 9 4.2587 -2.3661 0.0119 8 6 2.1976 -1.1968 0.0057 9 16 1.3166 -2.7228 0.0138 10 8 2.2647 -3.7319 0.3330 11 8 0.1345 -2.4997 0.7702 12 7 0.8282 -3.0150 -1.5414 13 6 1.7826 -3.2698 -2.5416 14 6 2.9638 -2.5395 -2.7646 15 7 3.5956 -3.0752 -3.7787 16 7 2.8417 -4.1587 -4.2470 17 6 3.1668 -4.9738 -5.3032 18 1 2.5102 -5.7848 -5.5815 19 6 4.3411 -4.7553 -6.0136 20 7 5.1398 -3.7698 -5.6747 21 14 4.7838 -5.8645 -7.4500 22 1 3.7197 -5.7854 -8.4828 23 1 6.0759 -5.4247 -8.0353 24 1 4.9081 -7.2655 -6.9735 25 6 1.7250 -4.2600 -3.4668 26 1 -0.3633 -0.0978 1.0231 27 1 -0.3633 0.9348 -0.4268 28 1 -0.3634 -0.8371 -0.5961 29 1 1.6576 2.1325 0.0004 30 1 4.1191 2.1350 -0.0103 31 1 5.3533 0.0045 -0.0005 32 1 -0.1163 -3.0103 -1.7622 33 1 3.2948 -1.6841 -2.1944 34 1 5.9597 -3.6176 -6.1704 35 1 0.9398 -4.9947 -3.5678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775276556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -26.674936 kcal Electronic energy + Delta-G solvation = -25835.175363 eV Core-core repulsion = 21876.105956 eV Total energy + Delta-G solvation = -3959.069407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.15801 -41.48147 -40.25940 -38.39070 -37.02955 -36.29502 -34.86863 -33.90858 -32.32686 -31.85114 -29.29347 -28.14474 -26.74460 -24.44819 -23.06175 -22.62063 -21.82351 -20.73364 -19.61513 -18.87295 -18.38324 -18.03018 -17.84726 -17.53301 -17.03876 -16.81880 -16.06900 -15.93324 -15.53750 -15.30574 -14.95308 -14.78836 -14.65442 -14.43806 -13.84785 -13.60286 -13.53936 -13.50765 -13.36267 -13.21376 -12.92347 -12.87652 -12.72150 -12.69189 -12.62313 -12.14137 -12.01367 -11.56617 -11.19297 -10.77264 -10.47915 -10.17077 -9.74246 -8.88712 -8.48565 -6.29186 -0.75343 -0.36833 0.05803 1.29007 1.40665 1.56399 1.72270 1.83311 2.11616 2.17085 2.33206 2.67132 2.79928 3.00865 3.07388 3.26337 3.62198 3.81719 4.03667 4.16911 4.19495 4.43840 4.48530 4.51391 4.61732 4.73589 4.81158 4.88384 4.91822 5.15218 5.19626 5.20883 5.26026 5.38808 5.75797 5.88550 6.05321 6.30251 6.71922 7.39684 7.57743 8.50514 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.004374 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.291955 B = 6399.373106 C = 7033.022400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 C -0.149 4.149 4 C -0.020 4.020 5 C -0.193 4.193 6 C 0.166 3.834 7 F -0.134 7.134 8 C -0.735 4.735 9 S 2.707 3.293 10 O -0.987 6.987 11 O -0.962 6.962 12 N -1.008 6.008 13 C -0.038 4.038 14 C -0.066 4.066 15 N -0.293 5.293 16 N -0.164 5.164 17 C -0.356 4.356 18 H 0.140 0.860 19 C -0.002 4.002 20 N -0.821 5.821 21 Si 1.018 2.982 22 H -0.252 1.252 23 H -0.276 1.276 24 H -0.258 1.258 25 C -0.065 4.065 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.157 0.843 32 H 0.427 0.573 33 H 0.159 0.841 34 H 0.278 0.722 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 11.151 7.683 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.037 3.963 3 C -0.168 4.168 4 C -0.038 4.038 5 C -0.212 4.212 6 C 0.145 3.855 7 F -0.112 7.112 8 C -0.825 4.825 9 S 2.799 3.201 10 O -0.977 6.977 11 O -0.952 6.952 12 N -0.763 5.763 13 C -0.146 4.146 14 C -0.243 4.243 15 N -0.125 5.125 16 N 0.067 4.933 17 C -0.487 4.487 18 H 0.157 0.843 19 C -0.214 4.214 20 N -0.449 5.449 21 Si 0.837 3.163 22 H -0.176 1.176 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.217 4.217 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.198 0.802 30 H 0.202 0.798 31 H 0.175 0.825 32 H 0.265 0.735 33 H 0.176 0.824 34 H 0.088 0.912 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.855 10.730 7.671 14.431 hybrid contribution -0.054 -0.374 -0.295 0.480 sum -5.909 10.355 7.376 14.019 Atomic orbital electron populations 1.21388 0.87964 1.05339 1.05243 1.19878 0.97451 0.90778 0.88167 1.21737 0.94648 0.98446 1.01935 1.21843 0.94590 0.98167 0.89164 1.21634 1.02446 0.91015 1.06136 1.17611 0.88952 0.82787 0.96103 1.91659 1.80015 1.46727 1.92788 1.30597 1.04157 1.22003 1.25727 1.01326 0.73033 0.73681 0.72087 1.93568 1.64476 1.56961 1.82731 1.93565 1.46768 1.86689 1.68199 1.51987 1.14356 1.86242 1.23763 1.16661 0.95881 1.01844 1.00197 1.23854 0.97166 1.02684 1.00627 1.78095 1.18651 1.01984 1.13726 1.44853 1.11334 1.18138 1.18968 1.20605 1.09214 1.11983 1.06887 0.84281 1.26825 0.94728 0.98109 1.01781 1.70357 1.10255 1.26918 1.37354 0.84667 0.78259 0.77519 0.75870 1.17574 1.20043 1.18175 1.22326 0.95880 1.04107 0.99346 0.87847 0.86640 0.91708 0.80158 0.79801 0.82516 0.73498 0.82394 0.91210 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.39 71.24 0.60 -2.20 16 2 C 0.04 0.95 5.87 -19.87 -0.12 0.83 16 3 C -0.15 -2.63 9.68 22.27 0.22 -2.42 16 4 C -0.02 -0.35 10.04 22.26 0.22 -0.13 16 5 C -0.19 -5.01 10.03 22.31 0.22 -4.79 16 6 C 0.17 5.82 5.04 22.37 0.11 5.93 16 7 F -0.13 -5.79 14.67 44.97 0.66 -5.13 16 8 C -0.74 -24.07 4.88 22.31 0.11 -23.96 16 9 S 2.71 99.03 4.91 -56.49 -0.28 98.75 16 10 O -0.99 -45.60 15.59 -128.00 -2.00 -47.60 16 11 O -0.96 -32.66 15.08 -128.00 -1.93 -34.59 16 12 N -1.01 -35.94 5.70 -51.65 -0.29 -36.23 16 13 C -0.04 -1.71 6.38 37.72 0.24 -1.47 16 14 C -0.07 -3.36 10.90 85.41 0.93 -2.43 16 15 N -0.29 -17.08 10.40 -56.45 -0.59 -17.67 16 16 N -0.16 -9.10 3.74 -189.98 -0.71 -9.81 16 17 C -0.36 -18.82 10.25 84.01 0.86 -17.95 16 18 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 19 C 0.00 -0.12 5.50 84.95 0.47 0.35 16 20 N -0.82 -46.31 11.81 21.66 0.26 -46.06 16 21 Si 1.02 38.25 29.55 68.60 2.03 40.27 16 22 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 23 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 25 C -0.06 -3.09 11.50 83.35 0.96 -2.13 16 26 H 0.10 1.94 7.84 -2.38 -0.02 1.93 16 27 H 0.12 1.39 8.05 -2.39 -0.02 1.37 16 28 H 0.06 1.40 6.22 -2.39 -0.01 1.38 16 29 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.43 11.88 8.96 -96.74 -0.87 11.01 16 33 H 0.16 7.34 4.87 -2.91 -0.01 7.32 16 34 H 0.28 14.39 8.31 -92.70 -0.77 13.62 16 35 H 0.18 7.15 8.06 -2.91 -0.02 7.13 16 Total: -1.00 -80.03 315.52 2.27 -77.76 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.30 Total: 30.67 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 4.82 Total: -50.37 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -1.34 Total: -109.77 kcal Atomic # 8 Polarization: -78.26 SS G_CDS: -3.93 Total: -82.18 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.66 Total: -5.13 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 16 Polarization: 99.03 SS G_CDS: -0.28 Total: 98.75 kcal Total: -80.03 2.27 -77.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775276556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.083 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds