Wall clock time and date at job start Tue Mar 31 2020 14:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47324 * 216.94139 * 3 2 1 5 5 C 1.37103 * 120.00358 * 267.99905 * 4 3 2 6 6 H 1.07994 * 120.00224 * 198.76391 * 5 4 3 7 7 C 1.38953 * 119.99774 * 18.75871 * 5 4 3 8 8 N 1.31412 * 120.00002 * 19.03337 * 7 5 4 9 9 Si 1.86802 * 119.99952 * 199.03764 * 7 5 4 10 10 H 1.48498 * 109.47012 * 89.99943 * 9 7 5 11 11 H 1.48495 * 109.46864 * 210.00183 * 9 7 5 12 12 H 1.48500 * 109.46719 * 329.99881 * 9 7 5 13 13 C 1.34774 * 119.99931 * 87.98841 * 4 3 2 14 14 O 1.21296 * 120.00154 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99881 * 0.02562 * 13 4 3 16 16 F 1.39898 * 109.47010 * 84.99645 * 15 13 4 17 17 F 1.39899 * 109.47152 * 324.99609 * 15 13 4 18 18 C 1.50700 * 109.46786 * 204.99431 * 15 13 4 19 19 C 1.38236 * 119.99682 * 90.00030 * 18 15 13 20 20 C 1.38237 * 119.99662 * 179.97438 * 19 18 15 21 21 C 1.38239 * 120.00343 * 0.02936 * 20 19 18 22 22 N 1.48013 * 120.00225 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99982 * 359.97438 * 22 21 20 24 24 O 1.21795 * 120.00407 * 180.02562 * 22 21 20 25 25 C 1.38235 * 119.99409 * 0.24644 * 21 20 19 26 26 C 1.38230 * 120.00185 * 270.02029 * 18 15 13 27 27 H 1.09000 * 109.47143 * 96.94484 * 3 2 1 28 28 H 1.08998 * 109.47819 * 336.94505 * 3 2 1 29 29 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 30 30 H 1.07993 * 120.00407 * 359.97438 * 19 18 15 31 31 H 1.07997 * 119.99979 * 179.97438 * 20 19 18 32 32 H 1.08007 * 119.99553 * 179.72874 * 25 21 20 33 33 H 1.07996 * 120.00088 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0958 1.1048 0.8301 5 6 3.3629 2.3236 0.2619 6 1 3.9925 3.0335 0.7776 7 6 2.8235 2.6455 -0.9776 8 7 1.7867 1.9806 -1.4357 9 14 3.5724 4.0232 -1.9928 10 1 4.6309 3.4691 -2.8747 11 1 2.5167 4.6558 -2.8237 12 1 4.1648 5.0398 -1.0868 13 6 3.2819 0.9225 2.1524 14 8 3.6854 1.8368 2.8398 15 6 2.9886 -0.4173 2.7770 16 9 4.1050 -1.2494 2.6413 17 9 1.8912 -1.0009 2.1350 18 6 2.6751 -0.2319 4.2393 19 6 1.3711 -0.0166 4.6447 20 6 1.0835 0.1529 5.9861 21 6 2.0997 0.1077 6.9221 22 7 1.7917 0.2898 8.3584 23 8 0.6429 0.4799 8.7155 24 8 2.6872 0.2505 9.1830 25 6 3.4044 -0.1019 6.5161 26 6 3.6914 -0.2767 5.1752 27 1 2.9712 0.1251 -1.0201 28 1 2.9718 -0.9447 0.4024 29 1 1.4100 2.2055 -2.3008 30 1 0.5772 0.0191 3.9134 31 1 0.0648 0.3215 6.3028 32 1 4.1990 -0.1328 7.2470 33 1 4.7101 -0.4450 4.8585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778006384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:20 Heat of formation + Delta-G solvation = -48.416612 kcal Electronic energy + Delta-G solvation = -27523.217706 eV Core-core repulsion = 22996.992333 eV Total energy + Delta-G solvation = -4526.225373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.23995 -47.16879 -42.26821 -39.69383 -38.84075 -36.65648 -36.14344 -34.54632 -32.82633 -32.22938 -31.61236 -28.47016 -27.80325 -26.15355 -24.49213 -23.39059 -22.23737 -20.39373 -19.48748 -18.78904 -18.38717 -18.01762 -17.62925 -17.59700 -17.18009 -16.45847 -15.68415 -15.27309 -15.23983 -14.58598 -14.30549 -14.10785 -14.10442 -13.89056 -13.52812 -13.39672 -13.34594 -12.93940 -12.84820 -12.18899 -11.80882 -11.79015 -11.76600 -11.63153 -11.42351 -11.35536 -11.25363 -11.22707 -10.73140 -10.66939 -10.56333 -9.82061 -9.62011 -9.56203 -9.11615 -8.46277 -6.85608 -4.40245 -0.35323 0.78770 1.16474 1.27603 2.67031 2.93460 3.04535 3.07668 3.08784 3.21331 3.53326 3.83079 3.88787 4.04908 4.14264 4.30604 4.39087 4.48633 4.60755 4.73802 4.92967 5.03902 5.07459 5.18661 5.45437 5.47034 5.54513 5.80595 5.91961 6.02555 6.21745 6.32008 7.12018 7.36360 7.54942 7.82451 8.51649 8.68803 8.72743 9.15374 10.17408 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003714 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.475495 B = 7537.049805 C = 7818.631200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.256 3.744 3 C 0.213 3.787 4 N -0.403 5.403 5 C -0.319 4.319 6 H 0.117 0.883 7 C 0.039 3.961 8 N -0.859 5.859 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.402 3.598 14 O -0.540 6.540 15 C 0.324 3.676 16 F -0.180 7.180 17 F -0.179 7.179 18 C -0.069 4.069 19 C -0.080 4.080 20 C -0.055 4.055 21 C -0.035 4.035 22 N 0.030 4.970 23 O -0.161 6.161 24 O -0.160 6.160 25 C -0.056 4.056 26 C -0.069 4.069 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.282 0.718 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -6.817 6.383 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.062 4.062 3 C 0.087 3.913 4 N -0.120 5.120 5 C -0.445 4.445 6 H 0.134 0.866 7 C -0.168 4.168 8 N -0.496 5.496 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.186 3.814 14 O -0.423 6.423 15 C 0.284 3.716 16 F -0.161 7.161 17 F -0.160 7.160 18 C -0.071 4.071 19 C -0.098 4.098 20 C -0.074 4.074 21 C -0.118 4.118 22 N 0.550 4.450 23 O -0.377 6.377 24 O -0.376 6.376 25 C -0.075 4.075 26 C -0.088 4.088 27 H 0.144 0.856 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.338 -6.467 5.798 8.994 hybrid contribution 0.466 0.517 -0.466 0.837 sum 2.803 -5.950 5.332 8.467 Atomic orbital electron populations 1.80867 1.13224 1.10289 1.10241 1.28601 0.94778 0.91267 0.91593 1.18945 0.82792 0.89749 0.99852 1.43691 1.53064 1.11302 1.03952 1.19912 1.29499 0.93340 1.01782 0.86553 1.25492 0.94191 0.99150 0.97929 1.69756 1.18047 1.41320 1.20456 0.85702 0.78699 0.79919 0.79244 1.19604 1.20629 1.18919 1.19723 0.90368 0.87870 0.83410 1.90641 1.50632 1.41029 1.59952 1.20083 0.73960 0.87701 0.89870 1.93054 1.52600 1.73873 1.96564 1.93071 1.54381 1.85989 1.82519 1.20352 0.95147 0.98031 0.93579 1.21018 0.96437 0.97044 0.95344 1.20963 0.99857 0.95140 0.91455 1.21206 0.96711 1.13468 0.80372 1.43608 1.00519 0.97510 1.03404 1.94540 1.06025 1.52056 1.85043 1.94527 1.40712 1.54330 1.48047 1.20974 0.94469 0.95001 0.97079 1.20947 1.00367 0.96852 0.90614 0.85636 0.89274 0.90730 0.82734 0.82351 0.82313 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.61 18.54 42.15 0.78 -9.83 16 2 C 0.26 5.42 10.97 -20.76 -0.23 5.20 16 3 C 0.21 4.06 4.75 -6.83 -0.03 4.03 16 4 N -0.40 -8.76 2.59 -117.93 -0.31 -9.06 16 5 C -0.32 -7.50 9.32 -14.93 -0.14 -7.64 16 6 H 0.12 2.86 7.39 -52.49 -0.39 2.47 16 7 C 0.04 0.89 4.93 -17.47 -0.09 0.80 16 8 N -0.86 -19.93 9.16 55.50 0.51 -19.42 16 9 Si 0.94 17.92 29.59 -169.99 -5.03 12.89 16 10 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 11 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 C 0.40 8.39 7.07 -10.99 -0.08 8.31 16 14 O -0.54 -12.66 15.89 5.54 0.09 -12.57 16 15 C 0.32 5.46 1.57 -29.03 -0.05 5.41 16 16 F -0.18 -2.75 15.95 2.25 0.04 -2.72 16 17 F -0.18 -3.01 11.43 2.25 0.03 -2.99 16 18 C -0.07 -1.04 4.38 -104.63 -0.46 -1.50 16 19 C -0.08 -1.11 9.40 -39.58 -0.37 -1.48 16 20 C -0.06 -0.70 9.56 -39.58 -0.38 -1.08 16 21 C -0.03 -0.46 6.85 -79.95 -0.55 -1.01 16 22 N 0.03 0.43 4.45 33.96 0.15 0.58 16 23 O -0.16 -2.38 18.45 -29.46 -0.54 -2.92 16 24 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 25 C -0.06 -0.67 9.56 -39.58 -0.38 -1.05 16 26 C -0.07 -0.89 9.36 -39.59 -0.37 -1.26 16 27 H 0.13 2.36 6.73 -51.93 -0.35 2.01 16 28 H 0.09 1.41 6.02 -51.93 -0.31 1.10 16 29 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 30 H 0.16 2.10 7.60 -52.49 -0.40 1.70 16 31 H 0.16 1.70 7.61 -52.49 -0.40 1.30 16 32 H 0.16 1.52 7.61 -52.48 -0.40 1.12 16 33 H 0.16 1.75 7.60 -52.49 -0.40 1.35 16 LS Contribution 312.42 15.07 4.71 4.71 Total: -1.00 -27.80 312.42 -5.02 -32.82 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -1.78 Total: 2.63 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -3.11 Total: 8.74 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.14 Total: -37.73 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.00 Total: -18.35 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.06 Total: -5.70 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.80 -5.02 -32.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778006384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.593 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds