Wall clock time and date at job start Tue Mar 31 2020 15:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 300.00313 * 3 2 1 6 6 H 1.48497 * 109.47030 * 60.00509 * 3 2 1 7 7 C 1.39031 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 181.14851 * 7 2 1 9 9 N 1.36990 * 119.99827 * 1.15114 * 7 2 1 10 10 C 1.37669 * 126.45684 * 137.14557 * 9 7 2 11 11 C 1.46437 * 125.20621 * 0.25904 * 10 9 7 12 12 C 1.34828 * 119.99396 * 185.35186 * 11 10 9 13 13 C 1.47162 * 120.00239 * 9.14275 * 12 11 10 14 14 C 1.40229 * 120.59648 * 47.72746 * 13 12 11 15 15 C 1.38304 * 118.28073 * 179.73732 * 14 13 12 16 16 C 1.38369 * 119.37076 * 0.55675 * 15 14 13 17 17 N 1.31951 * 121.15838 * 359.70087 * 16 15 14 18 18 C 1.31765 * 121.88526 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.75630 * 180.02562 * 18 17 16 20 20 N 1.31549 * 109.58093 * 179.97438 * 10 9 7 21 21 C 1.35456 * 109.68075 * 359.97438 * 20 10 9 22 22 C 1.39912 * 133.22610 * 180.02562 * 21 20 10 23 23 C 1.37650 * 119.78233 * 179.97438 * 22 21 20 24 24 C 1.38776 * 120.53937 * 359.97438 * 23 22 21 25 25 C 1.37968 * 120.46753 * 0.02562 * 24 23 22 26 26 C 1.38340 * 126.45648 * 317.13693 * 9 7 2 27 27 H 0.96997 * 120.00309 * 355.00743 * 1 2 3 28 28 H 1.07990 * 120.00346 * 5.35917 * 11 10 9 29 29 H 1.08007 * 119.99424 * 189.13855 * 12 11 10 30 30 H 1.07996 * 120.85555 * 359.97416 * 14 13 12 31 31 H 1.08001 * 120.31436 * 180.25932 * 15 14 13 32 32 H 1.08002 * 119.42269 * 179.67478 * 16 15 14 33 33 H 1.07996 * 120.11089 * 0.02562 * 22 21 20 34 34 H 1.07997 * 119.73264 * 180.02562 * 23 22 21 35 35 H 1.07995 * 119.76618 * 179.97438 * 24 23 22 36 36 H 1.08001 * 120.06231 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.7072 1.3465 -0.0006 5 1 1.8884 2.3965 -1.2124 6 1 1.8885 2.3964 1.2125 7 6 2.0084 -1.2040 -0.0005 8 1 3.0882 -1.2042 0.0182 9 7 1.3237 -2.3903 -0.0249 10 6 1.6308 -3.4966 -0.7844 11 6 2.7630 -3.5992 -1.7074 12 6 2.9049 -4.6944 -2.4810 13 6 1.8252 -5.6920 -2.5492 14 6 0.4967 -5.2930 -2.7544 15 6 -0.4792 -6.2711 -2.8161 16 6 -0.1201 -7.5986 -2.6633 17 7 1.1371 -7.9475 -2.4659 18 6 2.1053 -7.0559 -2.4043 19 17 3.7406 -7.5765 -2.1429 20 7 0.7549 -4.4496 -0.5495 21 6 -0.1525 -4.0211 0.3603 22 6 -1.2708 -4.6178 0.9527 23 6 -2.0178 -3.9119 1.8683 24 6 -1.6707 -2.6123 2.2097 25 6 -0.5713 -2.0081 1.6356 26 6 0.1934 -2.7022 0.7092 27 1 -0.4850 0.8368 0.0731 28 1 3.4843 -2.7978 -1.7684 29 1 3.8111 -4.8394 -3.0506 30 1 0.2427 -4.2492 -2.8653 31 1 -1.5124 -6.0010 -2.9771 32 1 -0.8822 -8.3627 -2.7061 33 1 -1.5465 -5.6292 0.6931 34 1 -2.8806 -4.3734 2.3254 35 1 -2.2659 -2.0699 2.9293 36 1 -0.3074 -0.9963 1.9058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806563060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:47 Heat of formation + Delta-G solvation = 125.548745 kcal Electronic energy + Delta-G solvation = -24494.606572 eV Core-core repulsion = 20970.863597 eV Total energy + Delta-G solvation = -3523.742975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87225 -39.56637 -36.36263 -36.23593 -34.75701 -33.84736 -31.58961 -31.23532 -29.86865 -29.16669 -27.58774 -25.36964 -24.09454 -22.95121 -21.97583 -21.16153 -20.40776 -18.74652 -17.64535 -17.01361 -16.59444 -15.92861 -15.56107 -15.24051 -14.77245 -14.19231 -14.17012 -14.02796 -13.59832 -13.20682 -13.01291 -12.74004 -12.71823 -12.26639 -12.06306 -11.65414 -11.41298 -11.36971 -11.14595 -11.01140 -10.92314 -10.83354 -10.75332 -10.43465 -9.89191 -9.70390 -9.30628 -9.04546 -8.99330 -8.52145 -8.04434 -7.35479 -6.78164 -6.70507 -4.76377 1.05443 1.60031 1.93365 2.22443 2.64655 2.73426 2.87953 2.92742 2.96272 3.64367 4.12053 4.18157 4.40202 4.61258 4.87122 5.01528 5.12464 5.20411 5.28748 5.46750 5.64715 5.72427 5.82274 5.90765 6.01705 6.13970 6.38799 6.46428 6.54150 6.59102 6.66128 6.81213 6.83134 6.93088 6.97729 7.03067 7.13555 7.45148 7.57512 7.77734 7.94858 8.04708 8.15432 8.44232 9.02478 9.20438 10.07320 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004965 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.333580 B = 5638.503117 C = 7026.926997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.053 3.947 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.354 4.354 8 H 0.109 0.891 9 N -0.275 5.275 10 C 0.217 3.783 11 C -0.032 4.032 12 C -0.121 4.121 13 C -0.056 4.056 14 C 0.027 3.973 15 C -0.179 4.179 16 C 0.111 3.889 17 N -0.495 5.495 18 C 0.178 3.822 19 Cl -0.049 7.049 20 N -0.507 5.507 21 C 0.034 3.966 22 C -0.093 4.093 23 C -0.137 4.137 24 C -0.162 4.162 25 C -0.030 4.030 26 C 0.051 3.949 27 H 0.282 0.718 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -4.568 -3.601 5.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.159 4.159 3 Si 0.761 3.239 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.127 0.873 9 N 0.055 4.945 10 C -0.038 4.038 11 C -0.052 4.052 12 C -0.144 4.144 13 C -0.059 4.059 14 C 0.000 4.000 15 C -0.200 4.200 16 C -0.047 4.047 17 N -0.206 5.206 18 C 0.014 3.986 19 Cl -0.021 7.021 20 N -0.230 5.230 21 C -0.091 4.091 22 C -0.113 4.113 23 C -0.158 4.158 24 C -0.183 4.183 25 C -0.050 4.050 26 C -0.064 4.064 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.010 -5.935 -3.908 7.177 hybrid contribution 0.099 2.634 0.520 2.687 sum 1.109 -3.301 -3.388 4.858 Atomic orbital electron populations 1.69943 1.06365 1.29416 1.40011 1.25733 0.95706 1.00690 0.93818 0.85705 0.79837 0.79759 0.78647 1.18534 1.19805 1.19769 1.19770 0.92425 0.80959 1.55099 0.87296 1.41229 1.18489 1.10211 1.24526 1.21588 0.98594 0.86055 0.97583 1.21053 0.93997 0.97001 0.93131 1.21698 0.97367 0.93680 1.01619 1.19309 0.94647 0.91355 1.00588 1.21372 0.90536 0.99511 0.88562 1.21874 1.00417 0.93902 1.03759 1.22377 0.91315 0.95038 0.95945 1.66742 1.00629 1.38343 1.14873 1.21583 0.87239 0.88744 1.01013 1.98351 1.17226 1.91782 1.94737 1.70717 1.05516 1.28136 1.18587 1.18959 0.97817 0.92381 0.99935 1.19884 0.94465 0.98729 0.98262 1.20531 1.00105 0.95254 0.99930 1.20627 0.98697 0.95707 1.03285 1.20161 0.92996 0.98294 0.93574 1.18864 0.94183 0.94750 0.98633 0.90676 0.84644 0.84979 0.85202 0.85131 0.82996 0.87561 0.87475 0.87478 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.09 9.85 55.50 0.55 -19.55 16 2 C 0.05 1.22 5.18 -17.48 -0.09 1.13 16 3 Si 0.94 17.49 29.56 -169.99 -5.02 12.46 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.35 -8.40 9.45 -14.95 -0.14 -8.54 16 8 H 0.11 2.42 7.83 -52.49 -0.41 2.01 16 9 N -0.27 -6.74 2.86 -57.45 -0.16 -6.90 16 10 C 0.22 4.87 6.75 -154.06 -1.04 3.83 16 11 C -0.03 -0.59 9.71 -37.49 -0.36 -0.95 16 12 C -0.12 -1.98 8.90 -37.17 -0.33 -2.31 16 13 C -0.06 -0.97 4.52 -104.87 -0.47 -1.45 16 14 C 0.03 0.47 6.59 -38.81 -0.26 0.22 16 15 C -0.18 -2.75 10.09 -39.51 -0.40 -3.14 16 16 C 0.11 1.67 11.17 -17.45 -0.19 1.47 16 17 N -0.49 -8.57 10.33 -9.95 -0.10 -8.67 16 18 C 0.18 3.10 7.32 -16.93 -0.12 2.98 16 19 Cl -0.05 -0.77 28.19 -51.86 -1.46 -2.23 16 20 N -0.51 -11.46 6.62 -8.83 -0.06 -11.52 16 21 C 0.03 0.81 7.21 -84.69 -0.61 0.20 16 22 C -0.09 -1.94 10.11 -39.17 -0.40 -2.33 16 23 C -0.14 -2.61 10.01 -39.60 -0.40 -3.01 16 24 C -0.16 -3.24 10.03 -39.48 -0.40 -3.64 16 25 C -0.03 -0.70 8.49 -39.50 -0.34 -1.03 16 26 C 0.05 1.27 6.09 -83.80 -0.51 0.76 16 27 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 28 H 0.14 2.22 7.90 -52.49 -0.41 1.81 16 29 H 0.13 1.77 8.03 -52.48 -0.42 1.35 16 30 H 0.13 2.43 7.36 -52.49 -0.39 2.05 16 31 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 2.90 6.39 -52.49 -0.34 2.56 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -27.74 326.46 -10.62 -38.37 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.22 Total: 8.95 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -6.06 Total: -15.82 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.22 Total: -46.64 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.02 Total: 12.46 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.46 Total: -2.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.74 -10.62 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806563060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.914 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds