Wall clock time and date at job start Tue Mar 31 2020 15:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 300.00313 * 3 2 1 6 6 H 1.48497 * 109.47030 * 60.00509 * 3 2 1 7 7 C 1.39031 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 181.14851 * 7 2 1 9 9 N 1.36990 * 119.99827 * 1.15114 * 7 2 1 10 10 C 1.37669 * 126.45684 * 137.14557 * 9 7 2 11 11 C 1.46437 * 125.20621 * 0.25904 * 10 9 7 12 12 C 1.34828 * 119.99396 * 185.35186 * 11 10 9 13 13 C 1.47162 * 120.00239 * 9.14275 * 12 11 10 14 14 C 1.40229 * 120.59648 * 47.72746 * 13 12 11 15 15 C 1.38304 * 118.28073 * 179.73732 * 14 13 12 16 16 C 1.38369 * 119.37076 * 0.55675 * 15 14 13 17 17 N 1.31951 * 121.15838 * 359.70087 * 16 15 14 18 18 C 1.31765 * 121.88526 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.75630 * 180.02562 * 18 17 16 20 20 N 1.31549 * 109.58093 * 179.97438 * 10 9 7 21 21 C 1.35456 * 109.68075 * 359.97438 * 20 10 9 22 22 C 1.39912 * 133.22610 * 180.02562 * 21 20 10 23 23 C 1.37650 * 119.78233 * 179.97438 * 22 21 20 24 24 C 1.38776 * 120.53937 * 359.97438 * 23 22 21 25 25 C 1.37968 * 120.46753 * 0.02562 * 24 23 22 26 26 C 1.38340 * 126.45648 * 317.13693 * 9 7 2 27 27 H 0.96997 * 120.00309 * 355.00743 * 1 2 3 28 28 H 1.07990 * 120.00346 * 5.35917 * 11 10 9 29 29 H 1.08007 * 119.99424 * 189.13855 * 12 11 10 30 30 H 1.07996 * 120.85555 * 359.97416 * 14 13 12 31 31 H 1.08001 * 120.31436 * 180.25932 * 15 14 13 32 32 H 1.08002 * 119.42269 * 179.67478 * 16 15 14 33 33 H 1.07996 * 120.11089 * 0.02562 * 22 21 20 34 34 H 1.07997 * 119.73264 * 180.02562 * 23 22 21 35 35 H 1.07995 * 119.76618 * 179.97438 * 24 23 22 36 36 H 1.08001 * 120.06231 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.7072 1.3465 -0.0006 5 1 1.8884 2.3965 -1.2124 6 1 1.8885 2.3964 1.2125 7 6 2.0084 -1.2040 -0.0005 8 1 3.0882 -1.2042 0.0182 9 7 1.3237 -2.3903 -0.0249 10 6 1.6308 -3.4966 -0.7844 11 6 2.7630 -3.5992 -1.7074 12 6 2.9049 -4.6944 -2.4810 13 6 1.8252 -5.6920 -2.5492 14 6 0.4967 -5.2930 -2.7544 15 6 -0.4792 -6.2711 -2.8161 16 6 -0.1201 -7.5986 -2.6633 17 7 1.1371 -7.9475 -2.4659 18 6 2.1053 -7.0559 -2.4043 19 17 3.7406 -7.5765 -2.1429 20 7 0.7549 -4.4496 -0.5495 21 6 -0.1525 -4.0211 0.3603 22 6 -1.2708 -4.6178 0.9527 23 6 -2.0178 -3.9119 1.8683 24 6 -1.6707 -2.6123 2.2097 25 6 -0.5713 -2.0081 1.6356 26 6 0.1934 -2.7022 0.7092 27 1 -0.4850 0.8368 0.0731 28 1 3.4843 -2.7978 -1.7684 29 1 3.8111 -4.8394 -3.0506 30 1 0.2427 -4.2492 -2.8653 31 1 -1.5124 -6.0010 -2.9771 32 1 -0.8822 -8.3627 -2.7061 33 1 -1.5465 -5.6292 0.6931 34 1 -2.8806 -4.3734 2.3254 35 1 -2.2659 -2.0699 2.9293 36 1 -0.3074 -0.9963 1.9058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806563060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:46 Heat of formation + Delta-G solvation = 113.858660 kcal Electronic energy + Delta-G solvation = -24495.113492 eV Core-core repulsion = 20970.863597 eV Total energy + Delta-G solvation = -3524.249895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51582 -40.87037 -37.94806 -37.50945 -36.31719 -35.37505 -33.12495 -32.70620 -31.26929 -30.77927 -29.15012 -27.10067 -25.47755 -24.26757 -23.45898 -22.81626 -22.02771 -20.28583 -19.25601 -18.40651 -18.01172 -17.33282 -17.22473 -16.65375 -16.35354 -15.81827 -15.49465 -15.42570 -15.00555 -14.76953 -14.61495 -14.18284 -14.10303 -13.68044 -13.65611 -13.27877 -12.92708 -12.65651 -12.60591 -12.43165 -12.38757 -12.27650 -12.19045 -11.98041 -11.38470 -11.31558 -10.77825 -10.70675 -10.38546 -9.94733 -9.48083 -9.04267 -8.41366 -8.36046 -6.54694 -0.32424 0.24005 0.48884 0.92657 1.03726 1.26576 1.36345 1.40148 1.51702 2.08639 2.46670 2.78983 2.89497 2.91167 3.33948 3.57543 3.65041 3.89268 4.03269 4.14358 4.22976 4.38570 4.41544 4.50621 4.59259 4.76534 4.89987 4.96780 5.00088 5.11700 5.13587 5.22673 5.30667 5.41757 5.46916 5.63142 5.73972 5.82569 5.92665 6.11365 6.26317 6.40036 6.72286 6.88477 7.33222 7.49565 8.38662 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004965 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.333580 B = 5638.503117 C = 7026.926997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.014 3.986 3 Si 1.005 2.995 4 H -0.251 1.251 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.378 4.378 8 H 0.114 0.886 9 N -0.299 5.299 10 C 0.212 3.788 11 C -0.064 4.064 12 C -0.088 4.088 13 C -0.075 4.075 14 C 0.015 3.985 15 C -0.176 4.176 16 C 0.116 3.884 17 N -0.511 5.511 18 C 0.167 3.833 19 Cl -0.038 7.038 20 N -0.508 5.508 21 C 0.007 3.993 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.153 4.153 25 C -0.059 4.059 26 C 0.019 3.981 27 H 0.283 0.717 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.109 0.891 31 H 0.153 0.847 32 H 0.191 0.809 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -5.685 -3.773 6.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.195 4.195 3 Si 0.826 3.174 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.506 4.506 8 H 0.132 0.868 9 N 0.030 4.970 10 C -0.044 4.044 11 C -0.083 4.083 12 C -0.110 4.110 13 C -0.079 4.079 14 C -0.012 4.012 15 C -0.196 4.196 16 C -0.041 4.041 17 N -0.222 5.222 18 C 0.004 3.996 19 Cl -0.010 7.010 20 N -0.231 5.231 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.148 4.148 24 C -0.174 4.174 25 C -0.080 4.080 26 C -0.096 4.096 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.127 0.873 31 H 0.171 0.829 32 H 0.208 0.792 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.560 -7.073 -4.074 8.182 hybrid contribution 0.162 2.785 0.530 2.840 sum 0.722 -4.288 -3.544 5.610 Atomic orbital electron populations 1.70062 1.07820 1.30067 1.41238 1.26610 0.96358 1.03538 0.92950 0.84700 0.78990 0.75394 0.78336 1.17457 1.19806 1.19605 1.20089 0.92874 0.81521 1.56130 0.86839 1.41464 1.19072 1.10889 1.25597 1.22333 0.99112 0.85450 0.97516 1.21217 0.94020 0.98783 0.94308 1.22073 0.97632 0.91912 0.99418 1.19450 0.94990 0.91799 1.01650 1.21313 0.91328 0.99006 0.89579 1.22151 1.01089 0.93739 1.02624 1.23008 0.91339 0.95768 0.93956 1.66842 1.01431 1.38491 1.15440 1.21720 0.88006 0.88761 1.01111 1.98348 1.16331 1.91651 1.94663 1.70760 1.05634 1.28101 1.18605 1.19487 0.99084 0.92493 1.00736 1.20228 0.93830 0.99699 0.98420 1.20967 1.00616 0.94525 0.98733 1.21030 0.97454 0.96307 1.02623 1.20231 0.94798 0.97982 0.94975 1.19327 0.94880 0.95808 0.99589 0.90672 0.83256 0.81767 0.87340 0.82883 0.79230 0.85731 0.83172 0.84487 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.46 9.85 21.67 0.21 -43.25 16 2 C 0.01 0.67 5.18 84.96 0.44 1.11 16 3 Si 1.01 36.50 29.56 68.60 2.03 38.53 16 4 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.38 -18.65 9.45 84.08 0.79 -17.86 16 8 H 0.11 5.23 7.83 -2.91 -0.02 5.21 16 9 N -0.30 -15.26 2.86 -335.69 -0.96 -16.22 16 10 C 0.21 9.80 6.75 135.69 0.92 10.72 16 11 C -0.06 -2.37 9.71 23.62 0.23 -2.14 16 12 C -0.09 -2.81 8.90 23.83 0.21 -2.60 16 13 C -0.08 -2.58 4.52 -20.03 -0.09 -2.67 16 14 C 0.01 0.51 6.59 22.77 0.15 0.66 16 15 C -0.18 -5.10 10.09 22.32 0.23 -4.88 16 16 C 0.12 3.20 11.17 84.71 0.95 4.15 16 17 N -0.51 -16.69 10.33 -185.38 -1.91 -18.60 16 18 C 0.17 5.61 7.32 85.13 0.62 6.23 16 19 Cl -0.04 -1.14 28.19 -2.72 -0.08 -1.22 16 20 N -0.51 -23.35 6.62 -181.86 -1.20 -24.56 16 21 C 0.01 0.31 7.21 39.60 0.29 0.60 16 22 C -0.10 -4.11 10.11 22.54 0.23 -3.88 16 23 C -0.13 -4.57 10.01 22.26 0.22 -4.35 16 24 C -0.15 -5.99 10.03 22.33 0.22 -5.76 16 25 C -0.06 -2.83 8.49 22.32 0.19 -2.64 16 26 C 0.02 0.97 6.09 38.85 0.24 1.20 16 27 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.15 4.97 7.90 -2.92 -0.02 4.95 16 29 H 0.17 4.07 8.03 -2.91 -0.02 4.04 16 30 H 0.11 4.20 7.36 -2.91 -0.02 4.18 16 31 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.10 5.21 6.39 -2.91 -0.02 5.19 16 Total: -1.00 -62.25 326.46 5.04 -57.21 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 1.12 Total: 30.21 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 5.83 Total: -22.10 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.87 Total: -102.63 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -62.25 5.04 -57.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806563060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.067 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds