Wall clock time and date at job start Tue Mar 31 2020 14:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38300 * 119.91178 * 2 1 4 4 C 1.38132 * 119.88983 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.99682 * 180.02562 * 4 3 2 6 6 C 1.39138 * 120.01160 * 0.05642 * 4 3 2 7 7 C 1.38532 * 120.02947 * 359.81710 * 6 4 3 8 8 C 1.38107 * 119.92276 * 180.02562 * 2 1 3 9 9 C 1.50592 * 121.49845 * 180.22777 * 7 6 4 10 10 C 1.52854 * 110.50628 * 339.28428 * 9 7 6 11 11 C 1.53428 * 108.85853 * 51.43710 * 10 9 7 12 12 N 1.40350 * 119.11425 * 179.59146 * 6 4 3 13 13 C 1.34768 * 120.63557 * 346.79938 * 12 6 4 14 14 O 1.21287 * 120.00306 * 325.09285 * 13 12 6 15 15 C 1.50702 * 120.00297 * 145.09597 * 13 12 6 16 16 S 1.80996 * 109.47340 * 184.03875 * 15 13 12 17 17 C 1.76209 * 99.99931 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99666 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00103 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99787 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00088 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46924 * 90.00231 * 21 19 17 23 23 H 1.48497 * 109.47288 * 209.99854 * 21 19 17 24 24 H 1.48501 * 109.47073 * 330.00492 * 21 19 17 25 25 H 1.09002 * 109.47292 * 269.96991 * 1 2 3 26 26 H 1.08999 * 109.47422 * 29.97896 * 1 2 3 27 27 H 1.09009 * 109.47089 * 149.97791 * 1 2 3 28 28 H 1.08000 * 120.06173 * 0.05373 * 3 2 1 29 29 H 1.08004 * 119.83415 * 359.97438 * 8 2 1 30 30 H 1.09000 * 109.27076 * 219.02149 * 9 7 6 31 31 H 1.09005 * 109.24390 * 99.52659 * 9 7 6 32 32 H 1.09008 * 109.56886 * 291.62118 * 10 9 7 33 33 H 1.08994 * 109.67654 * 171.31452 * 10 9 7 34 34 H 1.08992 * 109.79647 * 56.34307 * 11 10 9 35 35 H 1.09002 * 109.79644 * 177.15090 * 11 10 9 36 36 H 1.09004 * 109.46928 * 304.04211 * 15 13 12 37 37 H 1.09000 * 109.47085 * 64.03594 * 15 13 12 38 38 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1988 0.0000 4 6 3.5780 1.1983 -0.0005 5 17 4.4465 2.7013 0.0001 6 6 4.2735 -0.0068 -0.0023 7 6 3.5812 -1.2068 0.0004 8 6 2.1959 -1.1970 -0.0005 9 6 4.3002 -2.5300 0.0037 10 6 5.7327 -2.3622 -0.5027 11 6 6.4058 -1.2274 0.2803 12 7 5.6768 0.0146 -0.0115 13 6 6.3444 1.1533 -0.2834 14 8 5.8949 1.9428 -1.0869 15 6 7.6496 1.4456 0.4109 16 16 8.2353 3.0887 -0.0723 17 6 9.7295 3.1668 0.8584 18 1 10.0201 2.3357 1.4839 19 6 10.5335 4.2959 0.7868 20 7 10.1794 5.3086 0.0241 21 14 12.1171 4.3790 1.7740 22 1 13.2355 3.8355 0.9622 23 1 12.4049 5.7917 2.1300 24 1 11.9699 3.5759 3.0144 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8899 -0.5142 28 1 1.6562 2.1338 0.0009 29 1 1.6519 -2.1300 -0.0005 30 1 3.7698 -3.2293 -0.6426 31 1 4.3218 -2.9246 1.0196 32 1 5.7180 -2.1150 -1.5643 33 1 6.2863 -3.2888 -0.3512 34 1 6.3616 -1.4391 1.3485 35 1 7.4449 -1.1279 -0.0338 36 1 7.5016 1.4155 1.4904 37 1 8.3890 0.6976 0.1246 38 1 10.7411 6.0979 -0.0257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839449481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:54 Heat of formation + Delta-G solvation = 21.179597 kcal Electronic energy + Delta-G solvation = -22876.683019 eV Core-core repulsion = 19451.565459 eV Total energy + Delta-G solvation = -3425.117560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96761 -38.73428 -36.94676 -36.03401 -33.56829 -32.43770 -32.25608 -30.22178 -29.26760 -26.99528 -25.63228 -25.24077 -23.35400 -22.37053 -20.45948 -19.19757 -17.77179 -17.27279 -17.02784 -15.96567 -15.53942 -15.28967 -14.81580 -14.67372 -14.66177 -13.97692 -13.85142 -13.80807 -13.48164 -13.40168 -13.08043 -12.72020 -12.61323 -12.51417 -12.33617 -11.77943 -11.59263 -11.26534 -11.07196 -11.05315 -10.97463 -10.78028 -10.71485 -10.25337 -9.80858 -9.65555 -9.07522 -8.81399 -8.26810 -8.13702 -7.46795 -6.51454 -6.22733 -3.93335 1.15352 1.26892 2.37176 2.84225 2.91965 3.21604 3.24353 3.29436 3.55504 3.59199 4.19673 4.39083 4.56258 4.75848 4.79242 4.88577 5.02971 5.06601 5.12742 5.15757 5.18856 5.32161 5.42261 5.46033 5.48913 5.58093 5.65286 5.70843 5.77145 5.84933 5.91897 5.97825 6.03476 6.17655 6.19745 6.44818 6.58800 6.96111 7.43945 7.58998 8.31375 8.34624 9.22779 10.84750 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.003622 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.963932 B = 7728.468347 C = 8686.874586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.116 4.116 3 C -0.083 4.083 4 C -0.091 4.091 5 Cl 0.025 6.975 6 C 0.193 3.807 7 C -0.118 4.118 8 C -0.088 4.088 9 C -0.071 4.071 10 C -0.136 4.136 11 C 0.112 3.888 12 N -0.569 5.569 13 C 0.464 3.536 14 O -0.418 6.418 15 C -0.137 4.137 16 S -0.066 6.066 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -16.785 1.427 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.122 4.122 5 Cl 0.056 6.944 6 C 0.094 3.906 7 C -0.122 4.122 8 C -0.107 4.107 9 C -0.109 4.109 10 C -0.174 4.174 11 C -0.010 4.010 12 N -0.292 5.292 13 C 0.252 3.748 14 O -0.288 6.288 15 C -0.288 4.288 16 S 0.161 5.839 17 C -0.680 4.680 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.629 -15.187 0.195 22.521 hybrid contribution 1.673 -0.680 1.557 2.384 sum -14.956 -15.867 1.752 21.875 Atomic orbital electron populations 1.20686 0.90807 1.02624 1.02103 1.19601 0.96086 0.92334 1.03786 1.20765 0.91247 0.98596 0.99655 1.20940 0.92998 0.87862 1.10436 1.98497 1.72029 1.31165 1.92698 1.17238 0.83019 0.91983 0.98381 1.19276 0.93562 0.92963 1.06399 1.20752 0.92449 0.97656 0.99847 1.20348 0.94971 0.93492 1.02042 1.21886 0.95916 0.98695 1.00933 1.21849 0.96505 0.82534 1.00131 1.45427 1.02893 1.10805 1.70117 1.19954 0.87473 0.79709 0.87614 1.90905 1.63199 1.46562 1.28122 1.23432 0.95800 1.06762 1.02758 1.85244 1.26780 1.10319 1.61584 1.22831 1.07721 1.05674 1.31814 0.90924 1.24988 0.98349 0.94656 0.95575 1.70019 1.37777 1.05667 1.36848 0.86170 0.81921 0.77563 0.79881 1.20252 1.20760 1.19669 0.91443 0.91646 0.91680 0.85087 0.85630 0.90244 0.90434 0.90800 0.89664 0.90870 0.88884 0.89700 0.89453 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.12 -1.27 5.88 -104.65 -0.61 -1.89 16 3 C -0.08 -1.10 9.48 -39.60 -0.38 -1.48 16 4 C -0.09 -1.47 6.11 -39.29 -0.24 -1.71 16 5 Cl 0.03 0.48 22.17 -51.86 -1.15 -0.67 16 6 C 0.19 2.94 6.25 -83.51 -0.52 2.41 16 7 C -0.12 -1.41 5.76 -104.46 -0.60 -2.01 16 8 C -0.09 -0.92 9.31 -39.52 -0.37 -1.29 16 9 C -0.07 -0.62 5.78 -28.01 -0.16 -0.78 16 10 C -0.14 -1.23 6.11 -26.58 -0.16 -1.39 16 11 C 0.11 1.29 6.04 -3.58 -0.02 1.27 16 12 N -0.57 -8.95 2.97 -112.78 -0.34 -9.28 16 13 C 0.46 9.01 5.50 -10.99 -0.06 8.95 16 14 O -0.42 -9.27 11.13 5.55 0.06 -9.21 16 15 C -0.14 -2.84 5.47 36.01 0.20 -2.64 16 16 S -0.07 -1.78 20.58 -107.50 -2.21 -3.99 16 17 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.06 0.42 8.08 -51.92 -0.42 0.00 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.03 6.85 -51.93 -0.36 0.68 16 36 H 0.08 1.70 8.14 -51.91 -0.42 1.28 16 37 H 0.09 1.66 7.19 -51.92 -0.37 1.29 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -33.83 337.04 -10.14 -43.96 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.92 Total: -3.00 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.37 Total: -13.88 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.40 Total: -34.72 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.15 Total: -0.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.83 -10.14 -43.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839449481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds