Wall clock time and date at job start Tue Mar 31 2020 14:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38300 * 119.91178 * 2 1 4 4 C 1.38132 * 119.88983 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.99682 * 180.02562 * 4 3 2 6 6 C 1.39138 * 120.01160 * 0.05642 * 4 3 2 7 7 C 1.38532 * 120.02947 * 359.81710 * 6 4 3 8 8 C 1.38107 * 119.92276 * 180.02562 * 2 1 3 9 9 C 1.50592 * 121.49845 * 180.22777 * 7 6 4 10 10 C 1.52854 * 110.50628 * 339.28428 * 9 7 6 11 11 C 1.53428 * 108.85853 * 51.43710 * 10 9 7 12 12 N 1.40350 * 119.11425 * 179.59146 * 6 4 3 13 13 C 1.34768 * 120.63557 * 346.79938 * 12 6 4 14 14 O 1.21287 * 120.00306 * 325.09285 * 13 12 6 15 15 C 1.50702 * 120.00297 * 145.09597 * 13 12 6 16 16 S 1.80996 * 109.47340 * 184.03875 * 15 13 12 17 17 C 1.76209 * 99.99931 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99666 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00103 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99787 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00088 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46924 * 90.00231 * 21 19 17 23 23 H 1.48497 * 109.47288 * 209.99854 * 21 19 17 24 24 H 1.48501 * 109.47073 * 330.00492 * 21 19 17 25 25 H 1.09002 * 109.47292 * 269.96991 * 1 2 3 26 26 H 1.08999 * 109.47422 * 29.97896 * 1 2 3 27 27 H 1.09009 * 109.47089 * 149.97791 * 1 2 3 28 28 H 1.08000 * 120.06173 * 0.05373 * 3 2 1 29 29 H 1.08004 * 119.83415 * 359.97438 * 8 2 1 30 30 H 1.09000 * 109.27076 * 219.02149 * 9 7 6 31 31 H 1.09005 * 109.24390 * 99.52659 * 9 7 6 32 32 H 1.09008 * 109.56886 * 291.62118 * 10 9 7 33 33 H 1.08994 * 109.67654 * 171.31452 * 10 9 7 34 34 H 1.08992 * 109.79647 * 56.34307 * 11 10 9 35 35 H 1.09002 * 109.79644 * 177.15090 * 11 10 9 36 36 H 1.09004 * 109.46928 * 304.04211 * 15 13 12 37 37 H 1.09000 * 109.47085 * 64.03594 * 15 13 12 38 38 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1988 0.0000 4 6 3.5780 1.1983 -0.0005 5 17 4.4465 2.7013 0.0001 6 6 4.2735 -0.0068 -0.0023 7 6 3.5812 -1.2068 0.0004 8 6 2.1959 -1.1970 -0.0005 9 6 4.3002 -2.5300 0.0037 10 6 5.7327 -2.3622 -0.5027 11 6 6.4058 -1.2274 0.2803 12 7 5.6768 0.0146 -0.0115 13 6 6.3444 1.1533 -0.2834 14 8 5.8949 1.9428 -1.0869 15 6 7.6496 1.4456 0.4109 16 16 8.2353 3.0887 -0.0723 17 6 9.7295 3.1668 0.8584 18 1 10.0201 2.3357 1.4839 19 6 10.5335 4.2959 0.7868 20 7 10.1794 5.3086 0.0241 21 14 12.1171 4.3790 1.7740 22 1 13.2355 3.8355 0.9622 23 1 12.4049 5.7917 2.1300 24 1 11.9699 3.5759 3.0144 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8899 -0.5142 28 1 1.6562 2.1338 0.0009 29 1 1.6519 -2.1300 -0.0005 30 1 3.7698 -3.2293 -0.6426 31 1 4.3218 -2.9246 1.0196 32 1 5.7180 -2.1150 -1.5643 33 1 6.2863 -3.2888 -0.3512 34 1 6.3616 -1.4391 1.3485 35 1 7.4449 -1.1279 -0.0338 36 1 7.5016 1.4155 1.4904 37 1 8.3890 0.6976 0.1246 38 1 10.7411 6.0979 -0.0257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839449481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:53 Heat of formation + Delta-G solvation = 1.755671 kcal Electronic energy + Delta-G solvation = -22877.525304 eV Core-core repulsion = 19451.565459 eV Total energy + Delta-G solvation = -3425.959845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09595 -39.94113 -38.02940 -37.23873 -34.62563 -34.55456 -33.17877 -31.26879 -30.66213 -27.86821 -27.64392 -26.36269 -24.28674 -23.31946 -21.62314 -20.26187 -19.61360 -18.63661 -18.23499 -17.23301 -16.90204 -16.64881 -16.33710 -16.16127 -15.68626 -15.33711 -14.83872 -14.75308 -14.52575 -14.50633 -14.39298 -14.19488 -13.82032 -13.43360 -13.19526 -13.04116 -12.92561 -12.67490 -12.60730 -12.57269 -12.11668 -11.82647 -11.78394 -11.62177 -11.24514 -11.13983 -11.06010 -10.31720 -9.89412 -9.35744 -8.69035 -8.59792 -8.37095 -6.14907 0.18632 0.25173 1.11576 1.26501 1.40174 1.43704 1.53909 1.55731 2.02310 2.25324 2.62082 2.97035 3.22810 3.52897 3.75363 3.82790 3.98214 3.98542 4.17639 4.22465 4.25637 4.30074 4.35076 4.44162 4.59532 4.68670 4.79200 4.90019 4.93908 5.00178 5.02486 5.05101 5.21854 5.26837 5.36355 5.39066 5.56814 5.63500 5.98011 6.17066 6.22237 6.91855 7.04116 8.72019 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.003622 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.963932 B = 7728.468347 C = 8686.874586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.101 4.101 4 C -0.118 4.118 5 Cl -0.018 7.018 6 C 0.160 3.840 7 C -0.113 4.113 8 C -0.083 4.083 9 C -0.070 4.070 10 C -0.129 4.129 11 C 0.099 3.901 12 N -0.568 5.568 13 C 0.467 3.533 14 O -0.456 6.456 15 C -0.111 4.111 16 S -0.144 6.144 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.259 1.259 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.167 0.833 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.193 -20.723 2.668 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.121 4.121 4 C -0.148 4.148 5 Cl 0.012 6.988 6 C 0.062 3.938 7 C -0.116 4.116 8 C -0.101 4.101 9 C -0.107 4.107 10 C -0.167 4.167 11 C -0.021 4.021 12 N -0.293 5.293 13 C 0.256 3.744 14 O -0.328 6.328 15 C -0.263 4.263 16 S 0.084 5.916 17 C -0.694 4.694 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.183 1.183 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.184 0.816 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.633 -19.174 1.445 26.089 hybrid contribution 1.762 0.388 1.169 2.150 sum -15.871 -18.786 2.614 24.732 Atomic orbital electron populations 1.20772 0.88164 1.03852 1.03305 1.20062 0.97941 0.91588 1.01314 1.20963 0.90348 1.00145 1.00596 1.21263 0.94021 0.86688 1.12826 1.98475 1.73294 1.33878 1.93116 1.17605 0.82686 0.92960 1.00537 1.19790 0.94425 0.93150 1.04263 1.21257 0.92002 0.99000 0.97870 1.20499 0.94289 0.91911 1.03975 1.21892 0.96671 0.98819 0.99311 1.22231 0.96441 0.81736 1.01736 1.45338 1.03519 1.10633 1.69767 1.19674 0.86925 0.80645 0.87191 1.90903 1.63972 1.48089 1.29849 1.23240 0.97226 1.02757 1.03029 1.85396 1.27570 1.16044 1.62620 1.23180 1.07993 1.06252 1.31948 0.90152 1.26117 1.02333 0.93990 0.96605 1.70182 1.39489 1.06455 1.38610 0.84960 0.76774 0.77854 0.78447 1.19117 1.20272 1.18273 0.90097 0.91500 0.89461 0.84772 0.81551 0.87547 0.88175 0.92560 0.86211 0.89184 0.89061 0.89143 0.87683 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.11 -2.08 5.88 -19.88 -0.12 -2.20 16 3 C -0.10 -2.68 9.48 22.26 0.21 -2.46 16 4 C -0.12 -3.91 6.11 22.46 0.14 -3.77 16 5 Cl -0.02 -0.75 22.17 -2.72 -0.06 -0.81 16 6 C 0.16 4.79 6.25 38.06 0.24 5.03 16 7 C -0.11 -2.36 5.76 -19.76 -0.11 -2.47 16 8 C -0.08 -1.40 9.31 22.31 0.21 -1.19 16 9 C -0.07 -0.89 5.78 29.77 0.17 -0.72 16 10 C -0.13 -1.91 6.11 30.69 0.19 -1.72 16 11 C 0.10 2.10 6.04 86.44 0.52 2.63 16 12 N -0.57 -17.85 2.97 -629.11 -1.87 -19.72 16 13 C 0.47 18.87 5.50 87.66 0.48 19.35 16 14 O -0.46 -21.50 11.13 -3.05 -0.03 -21.53 16 15 C -0.11 -4.75 5.47 71.24 0.39 -4.36 16 16 S -0.14 -8.13 20.58 -56.49 -1.16 -9.29 16 17 C -0.55 -31.81 9.50 67.95 0.65 -31.16 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.83 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 21 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 27 H 0.09 0.70 8.08 -2.38 -0.02 0.68 16 28 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.92 6.85 -2.39 -0.02 1.90 16 36 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.11 4.04 7.19 -2.40 -0.02 4.02 16 38 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -78.96 337.04 4.40 -74.56 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.07 Total: 9.18 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.14 Total: -22.29 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.58 Total: -76.10 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.03 Total: -21.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.06 Total: -0.81 kcal Total: -78.96 4.40 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839449481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.317 kcal (2) G-P(sol) polarization free energy of solvation -78.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds