Wall clock time and date at job start Tue Mar 31 2020 15:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47253 * 269.99639 * 3 2 1 5 5 H 1.48499 * 109.47398 * 29.99779 * 3 2 1 6 6 H 1.48502 * 109.46972 * 149.99858 * 3 2 1 7 7 C 1.37881 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00278 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99789 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.46989 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54551 * 68.37012 * 10 9 7 12 12 O 1.42102 * 110.54291 * 291.62109 * 10 9 7 13 13 N 1.65600 * 104.44936 * 179.97438 * 10 9 7 14 14 C 1.34779 * 119.99855 * 64.99590 * 13 10 9 15 15 O 1.21272 * 120.00192 * 0.02562 * 14 13 10 16 16 C 1.50705 * 119.99542 * 180.02562 * 14 13 10 17 17 H 1.08991 * 109.71410 * 54.45900 * 16 14 13 18 18 C 1.53410 * 109.68189 * 293.90847 * 16 14 13 19 19 C 1.53067 * 108.31400 * 175.58908 * 18 16 14 20 20 C 1.50767 * 109.69019 * 48.16515 * 19 18 16 21 21 C 1.38507 * 118.76531 * 162.41669 * 20 19 18 22 22 C 1.38107 * 120.31593 * 179.51414 * 21 20 19 23 23 C 1.38296 * 119.98212 * 0.03173 * 22 21 20 24 24 C 1.37967 * 119.95810 * 0.35323 * 23 22 21 25 25 C 1.38374 * 121.40353 * 342.14132 * 20 19 18 26 26 O 1.35841 * 121.80482 * 0.64386 * 25 20 19 27 27 H 0.96999 * 119.99701 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47067 * 59.99319 * 9 7 2 29 29 H 1.09000 * 109.46493 * 299.99938 * 9 7 2 30 30 H 0.96997 * 119.99984 * 245.00343 * 13 10 9 31 31 H 1.08995 * 109.70010 * 295.29175 * 18 16 14 32 32 H 1.09005 * 109.69449 * 55.88698 * 18 16 14 33 33 H 1.09005 * 109.43441 * 288.09901 * 19 18 16 34 34 H 1.09000 * 109.43421 * 168.23706 * 19 18 16 35 35 H 1.07998 * 119.84205 * 359.53140 * 21 20 19 36 36 H 1.07993 * 120.00801 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.01600 * 180.02562 * 23 22 21 38 38 H 1.07993 * 119.89183 * 179.70448 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8204 -3.5378 -1.2362 12 8 3.8196 -3.5383 1.2377 13 7 5.7658 -2.7596 0.0009 14 6 6.3939 -2.2092 1.0588 15 8 5.7511 -1.8205 2.0109 16 6 7.8952 -2.0769 1.0584 17 1 8.2169 -1.5418 0.1651 18 6 8.5367 -3.4701 1.0855 19 6 10.0540 -3.3033 0.9727 20 6 10.5236 -2.2542 1.9484 21 6 11.8683 -2.2034 2.2766 22 6 12.3349 -1.2491 3.1592 23 6 11.4578 -0.3389 3.7201 24 6 10.1160 -0.3896 3.4030 25 6 9.6430 -1.3471 2.5110 26 8 8.3156 -1.3651 2.2232 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 6.2799 -3.0707 -0.7605 31 1 8.2908 -3.9697 2.0225 32 1 8.1687 -4.0604 0.2462 33 1 10.3108 -2.9964 -0.0413 34 1 10.5410 -4.2521 1.1980 35 1 12.5552 -2.9133 1.8401 36 1 13.3844 -1.2138 3.4113 37 1 11.8222 0.4079 4.4100 38 1 9.4313 0.3187 3.8454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842354799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:00 Heat of formation + Delta-G solvation = -122.680275 kcal Electronic energy + Delta-G solvation = -25266.629763 eV Core-core repulsion = 21394.564806 eV Total energy + Delta-G solvation = -3872.064957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30561 -39.72140 -37.60020 -36.44345 -35.37944 -34.97482 -34.14678 -33.28186 -31.14936 -30.48984 -29.85283 -26.96285 -24.20394 -23.15404 -22.78250 -22.18671 -20.33588 -19.48290 -18.32466 -18.04195 -17.51485 -16.98194 -16.47520 -16.01436 -15.76003 -15.42681 -14.94524 -14.86029 -14.59834 -14.47395 -14.25834 -14.08543 -13.66975 -13.46199 -12.92806 -12.74331 -12.59255 -12.26508 -12.17325 -11.84993 -11.70392 -11.60547 -11.48487 -11.38662 -11.36616 -10.90155 -10.86546 -10.75967 -10.36350 -10.05663 -9.89553 -9.47483 -9.09772 -8.84917 -8.45077 -6.33755 -4.43639 0.72962 1.00620 1.13294 2.03327 2.47549 3.14158 3.21746 3.24853 3.26191 3.45335 3.94865 4.09457 4.21527 4.31997 4.33862 4.41035 4.53652 4.73051 4.78615 4.80694 4.89196 4.98100 5.05783 5.11124 5.16003 5.23145 5.38057 5.51010 5.60460 5.73680 5.98585 6.11800 6.13966 6.23435 6.25294 6.45489 6.67453 7.12293 7.13562 7.47156 7.97125 8.55983 9.20737 10.77045 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.003502 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.366790 B = 7992.664633 C = 9080.226675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.091 3.909 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.534 4.534 8 H 0.088 0.912 9 C -0.458 4.458 10 S 2.577 3.423 11 O -0.956 6.956 12 O -0.940 6.940 13 N -1.057 6.057 14 C 0.539 3.461 15 O -0.459 6.459 16 C 0.074 3.926 17 H 0.109 0.891 18 C -0.154 4.154 19 C -0.075 4.075 20 C -0.164 4.164 21 C -0.084 4.084 22 C -0.154 4.154 23 C -0.087 4.087 24 C -0.144 4.144 25 C 0.135 3.865 26 O -0.287 6.287 27 H 0.273 0.727 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.427 0.573 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.940 -2.736 0.882 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.116 4.116 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.573 4.573 8 H 0.106 0.894 9 C -0.594 4.594 10 S 2.678 3.322 11 O -0.946 6.946 12 O -0.930 6.930 13 N -0.818 5.818 14 C 0.322 3.678 15 O -0.327 6.327 16 C 0.013 3.987 17 H 0.126 0.874 18 C -0.192 4.192 19 C -0.112 4.112 20 C -0.165 4.165 21 C -0.103 4.103 22 C -0.172 4.172 23 C -0.105 4.105 24 C -0.162 4.162 25 C 0.089 3.911 26 O -0.200 6.200 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 25.693 -3.102 1.742 25.938 hybrid contribution 0.863 1.228 -0.596 1.615 sum 26.556 -1.874 1.146 26.646 Atomic orbital electron populations 1.69860 1.06268 1.27920 1.47284 1.24849 0.94749 0.99157 0.92820 0.86745 0.80751 0.82919 0.78981 1.19554 1.20403 1.18496 1.20012 0.84617 0.96443 1.56249 0.89444 1.28105 1.08725 1.16061 1.06488 1.06424 0.71316 0.80215 0.74282 1.93552 1.80877 1.74976 1.45225 1.93562 1.80606 1.74124 1.44718 1.55566 1.31332 1.68750 1.26199 1.19816 0.89744 0.76366 0.81845 1.90962 1.66943 1.42912 1.31919 1.22334 0.92053 0.94841 0.89504 0.87368 1.22270 0.96078 0.95256 1.05594 1.20489 0.94358 0.97943 0.98368 1.19841 0.94400 0.98943 1.03308 1.20877 0.93897 0.98309 0.97169 1.21034 0.99898 0.96891 0.99364 1.20954 0.92233 0.98511 0.98852 1.20668 0.96066 0.98920 1.00561 1.18762 0.82148 0.94179 0.95989 1.86099 1.20712 1.70216 1.43001 0.91741 0.88404 0.90017 0.73877 0.89096 0.88571 0.89851 0.89240 0.85765 0.85874 0.85319 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.09 2.60 5.47 -17.81 -0.10 2.51 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.53 -15.10 9.68 -34.44 -0.33 -15.43 16 8 H 0.09 2.64 7.96 -52.49 -0.42 2.22 16 9 C -0.46 -10.53 4.71 36.01 0.17 -10.36 16 10 S 2.58 52.49 5.03 -107.50 -0.54 51.95 16 11 O -0.96 -20.53 18.08 -57.54 -1.04 -21.57 16 12 O -0.94 -22.56 17.04 -64.79 -1.10 -23.66 16 13 N -1.06 -14.90 5.57 31.22 0.17 -14.73 16 14 C 0.54 8.29 6.92 -10.98 -0.08 8.21 16 15 O -0.46 -9.33 14.62 -22.88 -0.33 -9.67 16 16 C 0.07 0.85 3.21 -27.67 -0.09 0.76 16 17 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.15 -1.32 5.46 -26.48 -0.14 -1.47 16 19 C -0.07 -0.52 5.86 -27.82 -0.16 -0.68 16 20 C -0.16 -1.54 5.75 -104.44 -0.60 -2.14 16 21 C -0.08 -0.67 9.67 -39.53 -0.38 -1.05 16 22 C -0.15 -1.19 10.05 -39.61 -0.40 -1.58 16 23 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 24 C -0.14 -1.54 9.94 -39.34 -0.39 -1.93 16 25 C 0.13 1.59 6.47 -39.19 -0.25 1.33 16 26 O -0.29 -4.00 9.47 -38.99 -0.37 -4.37 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.10 2.26 6.25 -51.92 -0.32 1.94 16 29 H 0.08 1.64 7.57 -51.92 -0.39 1.25 16 30 H 0.43 3.83 8.63 -34.47 -0.30 3.53 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.58 7.97 -51.93 -0.41 0.16 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -37.93 336.69 -9.59 -47.52 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.40 Total: 1.74 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -3.16 Total: -22.98 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.95 Total: -40.21 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -2.85 Total: -59.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.54 Total: 51.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.93 -9.59 -47.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842354799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.164 kcal (2) G-P(sol) polarization free energy of solvation -37.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds