Wall clock time and date at job start Tue Mar 31 2020 15:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47253 * 269.99639 * 3 2 1 5 5 H 1.48499 * 109.47398 * 29.99779 * 3 2 1 6 6 H 1.48502 * 109.46972 * 149.99858 * 3 2 1 7 7 C 1.37881 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00278 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99789 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.46989 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54551 * 68.37012 * 10 9 7 12 12 O 1.42102 * 110.54291 * 291.62109 * 10 9 7 13 13 N 1.65600 * 104.44936 * 179.97438 * 10 9 7 14 14 C 1.34779 * 119.99855 * 64.99590 * 13 10 9 15 15 O 1.21272 * 120.00192 * 0.02562 * 14 13 10 16 16 C 1.50705 * 119.99542 * 180.02562 * 14 13 10 17 17 H 1.08991 * 109.71410 * 54.45900 * 16 14 13 18 18 C 1.53410 * 109.68189 * 293.90847 * 16 14 13 19 19 C 1.53067 * 108.31400 * 175.58908 * 18 16 14 20 20 C 1.50767 * 109.69019 * 48.16515 * 19 18 16 21 21 C 1.38507 * 118.76531 * 162.41669 * 20 19 18 22 22 C 1.38107 * 120.31593 * 179.51414 * 21 20 19 23 23 C 1.38296 * 119.98212 * 0.03173 * 22 21 20 24 24 C 1.37967 * 119.95810 * 0.35323 * 23 22 21 25 25 C 1.38374 * 121.40353 * 342.14132 * 20 19 18 26 26 O 1.35841 * 121.80482 * 0.64386 * 25 20 19 27 27 H 0.96999 * 119.99701 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47067 * 59.99319 * 9 7 2 29 29 H 1.09000 * 109.46493 * 299.99938 * 9 7 2 30 30 H 0.96997 * 119.99984 * 245.00343 * 13 10 9 31 31 H 1.08995 * 109.70010 * 295.29175 * 18 16 14 32 32 H 1.09005 * 109.69449 * 55.88698 * 18 16 14 33 33 H 1.09005 * 109.43441 * 288.09901 * 19 18 16 34 34 H 1.09000 * 109.43421 * 168.23706 * 19 18 16 35 35 H 1.07998 * 119.84205 * 359.53140 * 21 20 19 36 36 H 1.07993 * 120.00801 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.01600 * 180.02562 * 23 22 21 38 38 H 1.07993 * 119.89183 * 179.70448 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 16 4.1161 -2.9044 0.0010 11 8 3.8204 -3.5378 -1.2362 12 8 3.8196 -3.5383 1.2377 13 7 5.7658 -2.7596 0.0009 14 6 6.3939 -2.2092 1.0588 15 8 5.7511 -1.8205 2.0109 16 6 7.8952 -2.0769 1.0584 17 1 8.2169 -1.5418 0.1651 18 6 8.5367 -3.4701 1.0855 19 6 10.0540 -3.3033 0.9727 20 6 10.5236 -2.2542 1.9484 21 6 11.8683 -2.2034 2.2766 22 6 12.3349 -1.2491 3.1592 23 6 11.4578 -0.3389 3.7201 24 6 10.1160 -0.3896 3.4030 25 6 9.6430 -1.3471 2.5110 26 8 8.3156 -1.3651 2.2232 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 6.2799 -3.0707 -0.7605 31 1 8.2908 -3.9697 2.0225 32 1 8.1687 -4.0604 0.2462 33 1 10.3108 -2.9964 -0.0413 34 1 10.5410 -4.2521 1.1980 35 1 12.5552 -2.9133 1.8401 36 1 13.3844 -1.2138 3.4113 37 1 11.8222 0.4079 4.4100 38 1 9.4313 0.3187 3.8454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842354799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:59 Heat of formation + Delta-G solvation = -151.718456 kcal Electronic energy + Delta-G solvation = -25267.888954 eV Core-core repulsion = 21394.564806 eV Total energy + Delta-G solvation = -3873.324147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19301 -40.81971 -38.41795 -38.15289 -37.15423 -36.04644 -35.38742 -35.09309 -31.95119 -31.81161 -31.13763 -27.76759 -25.19713 -24.87090 -23.46320 -23.30916 -21.13128 -20.88306 -19.70820 -19.25855 -18.94285 -18.24852 -17.67676 -17.52891 -16.93887 -16.43276 -16.34891 -16.12597 -15.95679 -15.39323 -15.22524 -14.93932 -14.76840 -14.43308 -14.36279 -14.14411 -13.82785 -13.66574 -13.46475 -13.29448 -13.19320 -12.98488 -12.68139 -12.43534 -12.40160 -12.28667 -12.14936 -12.01357 -11.92479 -11.52208 -11.34914 -11.19199 -10.96973 -9.71536 -9.15071 -8.49808 -6.66522 -0.93280 0.38100 0.45897 0.81358 1.27099 1.28172 1.34191 1.43792 2.14608 2.23259 2.64845 2.76659 2.81446 2.96032 3.27074 3.39989 3.70110 3.77954 3.80888 3.87290 4.15277 4.23960 4.33176 4.33931 4.42658 4.49666 4.61271 4.63462 4.85898 4.97229 5.03508 5.12618 5.15619 5.34474 5.52706 5.56431 5.61638 5.76550 5.86914 6.26971 6.37120 6.42650 7.02172 8.65285 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.003502 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.366790 B = 7992.664633 C = 9080.226675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.245 1.245 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.556 4.556 8 H 0.046 0.954 9 C -0.476 4.476 10 S 2.613 3.387 11 O -0.967 6.967 12 O -0.981 6.981 13 N -1.031 6.031 14 C 0.538 3.462 15 O -0.515 6.515 16 C 0.076 3.924 17 H 0.148 0.852 18 C -0.154 4.154 19 C -0.070 4.070 20 C -0.169 4.169 21 C -0.086 4.086 22 C -0.152 4.152 23 C -0.092 4.092 24 C -0.169 4.169 25 C 0.102 3.898 26 O -0.324 6.324 27 H 0.278 0.722 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.453 0.547 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.408 -2.538 -0.629 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.173 4.173 3 Si 0.767 3.233 4 H -0.168 1.168 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.595 4.595 8 H 0.065 0.935 9 C -0.610 4.610 10 S 2.712 3.288 11 O -0.957 6.957 12 O -0.972 6.972 13 N -0.799 5.799 14 C 0.325 3.675 15 O -0.386 6.386 16 C 0.015 3.985 17 H 0.165 0.835 18 C -0.192 4.192 19 C -0.106 4.106 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.170 4.170 23 C -0.110 4.110 24 C -0.188 4.188 25 C 0.058 3.942 26 O -0.238 6.238 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.294 0.706 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 30.178 -2.926 0.183 30.320 hybrid contribution -0.450 1.082 -0.079 1.174 sum 29.729 -1.844 0.103 29.786 Atomic orbital electron populations 1.69998 1.08288 1.29379 1.48803 1.25936 0.95695 1.03553 0.92104 0.85713 0.79643 0.77439 0.80527 1.16831 1.20008 1.17084 1.20280 0.87650 0.95238 1.56296 0.93543 1.28180 1.05501 1.19343 1.07952 1.05006 0.72374 0.78418 0.73023 1.93530 1.82160 1.74623 1.45433 1.93512 1.82409 1.74497 1.46735 1.54847 1.29249 1.68462 1.27345 1.20719 0.91656 0.74550 0.80615 1.90942 1.68353 1.45344 1.34005 1.22529 0.88385 0.97152 0.90394 0.83475 1.22374 0.97489 0.93464 1.05867 1.20598 0.92702 0.98191 0.99151 1.20185 0.94705 0.98736 1.03368 1.21277 0.93723 0.98606 0.96722 1.21440 1.01080 0.96041 0.98474 1.21232 0.91392 0.99272 0.99113 1.20831 0.97143 0.99407 1.01432 1.19056 0.81688 0.95878 0.97609 1.86024 1.22354 1.71169 1.44245 0.91268 0.88434 0.86505 0.70615 0.91186 0.85522 0.87096 0.87135 0.82752 0.83181 0.83434 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.96 21.45 0.30 -57.08 16 2 C 0.03 1.71 5.47 84.65 0.46 2.17 16 3 Si 0.95 42.61 27.47 68.60 1.88 44.49 16 4 H -0.24 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.56 -32.45 9.68 25.60 0.25 -32.20 16 8 H 0.05 2.98 7.96 -2.91 -0.02 2.96 16 9 C -0.48 -21.83 4.71 71.24 0.34 -21.49 16 10 S 2.61 106.17 5.03 -56.49 -0.28 105.89 16 11 O -0.97 -40.91 18.08 -127.65 -2.31 -43.21 16 12 O -0.98 -48.38 17.04 -120.72 -2.06 -50.44 16 13 N -1.03 -27.11 5.57 -173.53 -0.97 -28.08 16 14 C 0.54 15.97 6.92 87.66 0.61 16.58 16 15 O -0.51 -21.30 14.62 24.19 0.35 -20.95 16 16 C 0.08 1.58 3.21 29.99 0.10 1.68 16 17 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 18 C -0.15 -2.18 5.46 30.75 0.17 -2.02 16 19 C -0.07 -0.67 5.86 29.89 0.18 -0.50 16 20 C -0.17 -2.70 5.75 -19.75 -0.11 -2.82 16 21 C -0.09 -1.03 9.67 22.30 0.22 -0.82 16 22 C -0.15 -1.87 10.05 22.25 0.22 -1.65 16 23 C -0.09 -1.43 10.04 22.22 0.22 -1.20 16 24 C -0.17 -3.65 9.94 22.42 0.22 -3.42 16 25 C 0.10 2.33 6.47 22.52 0.15 2.47 16 26 O -0.32 -8.95 9.47 -72.88 -0.69 -9.64 16 27 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.10 4.52 6.25 -2.39 -0.01 4.50 16 29 H 0.12 4.48 7.57 -2.39 -0.02 4.46 16 30 H 0.45 6.56 8.63 -96.75 -0.84 5.73 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 0.96 7.97 -2.38 -0.02 0.94 16 33 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -88.39 336.69 -0.55 -88.93 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.21 Total: 13.31 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 3.01 Total: -43.22 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -0.67 Total: -85.16 kcal Atomic # 8 Polarization: -119.54 SS G_CDS: -4.70 Total: -124.24 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 16 Polarization: 106.17 SS G_CDS: -0.28 Total: 105.89 kcal Total: -88.39 -0.55 -88.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842354799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.785 kcal (2) G-P(sol) polarization free energy of solvation -88.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds