Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00409 * 2 1 4 4 H 1.48494 * 109.47430 * 270.00250 * 3 2 1 5 5 H 1.48509 * 109.47152 * 30.00084 * 3 2 1 6 6 H 1.48504 * 109.47291 * 149.99864 * 3 2 1 7 7 C 1.37876 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99590 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00348 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47450 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00085 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99926 * 180.02562 * 11 10 9 14 14 O 1.42901 * 109.46937 * 180.02562 * 13 11 10 15 15 C 1.35905 * 116.99604 * 180.02562 * 14 13 11 16 16 C 1.38723 * 120.05884 * 359.72201 * 15 14 13 17 17 C 1.38145 * 119.94329 * 179.74683 * 16 15 14 18 18 N 1.48023 * 119.97356 * 180.29334 * 17 16 15 19 19 O 1.21801 * 119.99972 * 180.23238 * 18 17 16 20 20 O 1.21800 * 119.99666 * 0.24007 * 18 17 16 21 21 C 1.38260 * 120.05668 * 0.53367 * 17 16 15 22 22 C 1.38268 * 120.10973 * 359.74025 * 21 17 16 23 23 N 1.48026 * 119.96988 * 180.02562 * 22 21 17 24 24 O 1.21803 * 119.99501 * 179.97438 * 23 22 21 25 25 O 1.21795 * 120.00178 * 359.97438 * 23 22 21 26 26 C 1.38139 * 120.05510 * 359.97438 * 22 21 17 27 27 H 0.97004 * 119.99552 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47490 * 59.99414 * 9 7 2 29 29 H 1.09006 * 109.46589 * 299.99976 * 9 7 2 30 30 H 0.96995 * 119.99981 * 0.02562 * 10 9 7 31 31 H 1.08999 * 109.47314 * 60.00033 * 13 11 10 32 32 H 1.08998 * 109.47471 * 300.00068 * 13 11 10 33 33 H 1.08001 * 120.02769 * 0.02562 * 16 15 14 34 34 H 1.08002 * 119.94791 * 179.76675 * 21 17 16 35 35 H 1.08001 * 120.02451 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1129 -1.9000 -0.0006 13 6 5.8270 -4.2426 -0.0008 14 8 7.2561 -4.2426 -0.0002 15 6 7.8729 -5.4536 -0.0012 16 6 7.1185 -6.6178 0.0030 17 6 7.7480 -7.8474 -0.0034 18 7 6.9435 -9.0900 -0.0055 19 8 7.4981 -10.1745 -0.0069 20 8 5.7271 -9.0279 -0.0061 21 6 9.1287 -7.9186 -0.0028 22 6 9.8830 -6.7597 -0.0012 23 7 11.3611 -6.8395 -0.0012 24 8 12.0260 -5.8189 -0.0003 25 8 11.9124 -7.9255 -0.0020 26 6 9.2583 -5.5277 -0.0008 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6809 0.8905 29 1 3.8751 -0.6798 -0.8895 30 1 3.3694 -3.3126 -0.0009 31 1 5.4637 -4.7560 -0.8911 32 1 5.4637 -4.7569 0.8888 33 1 6.0399 -6.5627 0.0066 34 1 9.6190 -8.8809 -0.0040 35 1 9.8479 -4.6228 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849954958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = -37.850088 kcal Electronic energy + Delta-G solvation = -25936.542140 eV Core-core repulsion = 21521.862481 eV Total energy + Delta-G solvation = -4414.679659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.10089 -42.69427 -41.27267 -39.47595 -38.20290 -37.23373 -37.18804 -34.64751 -33.45354 -32.61348 -31.97370 -29.74671 -27.85407 -27.52313 -27.01283 -23.49882 -23.27273 -22.25283 -20.95196 -20.48575 -19.60634 -19.12920 -18.71955 -18.32662 -18.10287 -18.04397 -17.72185 -17.44464 -17.00834 -16.77311 -15.97808 -15.40170 -14.90694 -14.53181 -14.06629 -13.87379 -13.60324 -13.33933 -12.80258 -12.63058 -12.51402 -12.19457 -12.19062 -12.08145 -11.91089 -11.77851 -11.72724 -11.72668 -11.21093 -10.98328 -10.91931 -10.13036 -9.73803 -9.68447 -9.64623 -8.96377 -8.50875 -6.36409 -4.40879 -1.27188 -0.84475 0.23791 0.33950 0.60675 0.74040 1.90345 2.09081 2.67457 3.15346 3.22728 3.29055 3.29743 3.43452 3.46607 3.52170 3.54497 3.88052 4.19133 4.28962 4.41336 4.56380 4.63413 4.70929 4.77839 4.86786 4.98605 5.57015 5.62036 6.13202 6.54162 6.82591 6.83673 6.93296 6.95253 7.14472 7.82329 8.21708 8.41787 8.62025 9.21649 10.75119 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002457 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.818586 B =11395.116258 C =12994.487209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.695 5.695 11 C 0.504 3.496 12 O -0.531 6.531 13 C 0.028 3.972 14 O -0.261 6.261 15 C 0.154 3.846 16 C -0.111 4.111 17 C 0.001 3.999 18 N 0.025 4.975 19 O -0.137 6.137 20 O -0.134 6.134 21 C -0.039 4.039 22 C -0.003 4.003 23 N 0.026 4.974 24 O -0.132 6.132 25 O -0.137 6.137 26 C -0.041 4.041 27 H 0.270 0.730 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.400 0.600 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -16.571 0.026 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.345 5.345 11 C 0.286 3.714 12 O -0.408 6.408 13 C -0.051 4.051 14 O -0.172 6.172 15 C 0.105 3.895 16 C -0.131 4.131 17 C -0.083 4.083 18 N 0.549 4.451 19 O -0.356 6.356 20 O -0.353 6.353 21 C -0.060 4.060 22 C -0.087 4.087 23 N 0.551 4.449 24 O -0.351 6.351 25 O -0.355 6.355 26 C -0.061 4.061 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.234 0.766 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.197 0.803 34 H 0.201 0.799 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 16.807 -14.882 0.032 22.449 hybrid contribution -0.114 0.018 -0.022 0.118 sum 16.693 -14.864 0.009 22.351 Atomic orbital electron populations 1.69869 1.06221 1.27667 1.48660 1.24784 0.94813 0.99210 0.93675 0.86825 0.80534 0.83213 0.79165 1.19732 1.20722 1.18512 1.21018 0.88145 0.95393 1.54223 0.90070 1.19606 0.95554 0.77515 0.97241 1.46082 1.04538 1.11878 1.71990 1.19631 0.83980 0.88737 0.79069 1.90747 1.55238 1.45286 1.49507 1.22999 0.77784 0.99624 1.04647 1.86332 1.21465 1.22686 1.86687 1.18300 0.90870 0.84983 0.95338 1.21564 1.03968 0.89533 0.98042 1.20395 0.90543 0.85475 1.11855 1.43303 1.01435 1.01968 0.98395 1.94611 1.74213 1.14271 1.52455 1.94618 0.94637 1.93691 1.52350 1.20513 0.91110 1.00661 0.93674 1.20313 0.81513 0.94473 1.12370 1.43229 1.02229 1.01039 0.98404 1.94628 1.63034 1.25200 1.52261 1.94609 1.72478 1.15890 1.52531 1.20556 0.92809 0.98525 0.94173 0.92041 0.95275 0.95720 0.76578 0.87983 0.87998 0.80350 0.79877 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.96 55.43 0.77 -24.32 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 20.20 27.47 -169.99 -4.67 15.53 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.55 -13.93 9.83 -34.44 -0.34 -14.27 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 9 C 0.22 4.92 4.50 -5.20 -0.02 4.90 16 10 N -0.69 -11.75 5.55 -61.47 -0.34 -12.09 16 11 C 0.50 7.85 7.91 -10.99 -0.09 7.76 16 12 O -0.53 -10.74 16.50 -14.35 -0.24 -10.97 16 13 C 0.03 0.26 5.22 36.00 0.19 0.45 16 14 O -0.26 -2.68 9.67 -39.35 -0.38 -3.06 16 15 C 0.15 1.17 6.69 -39.22 -0.26 0.91 16 16 C -0.11 -0.73 8.54 -39.44 -0.34 -1.06 16 17 C 0.00 0.00 6.85 -79.97 -0.55 -0.54 16 18 N 0.02 0.23 4.45 33.95 0.15 0.38 16 19 O -0.14 -1.37 18.45 -29.46 -0.54 -1.91 16 20 O -0.13 -1.34 18.45 -29.46 -0.54 -1.89 16 21 C -0.04 -0.27 9.06 -39.56 -0.36 -0.63 16 22 C 0.00 -0.02 6.85 -79.97 -0.55 -0.57 16 23 N 0.03 0.24 4.45 33.95 0.15 0.40 16 24 O -0.13 -1.34 18.45 -29.46 -0.54 -1.89 16 25 O -0.14 -1.35 18.45 -29.46 -0.54 -1.90 16 26 C -0.04 -0.30 9.49 -39.44 -0.37 -0.67 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 29 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 30 H 0.40 5.58 8.32 -40.82 -0.34 5.24 16 31 H 0.10 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.10 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.18 0.86 5.85 -52.49 -0.31 0.55 16 34 H 0.18 1.09 7.15 -52.49 -0.38 0.71 16 35 H 0.18 1.19 7.61 -52.49 -0.40 0.79 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -31.94 332.18 -7.07 -39.00 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -2.56 Total: -0.58 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.79 Total: -1.71 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.73 Total: -35.64 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -2.79 Total: -21.61 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.94 -7.07 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849954958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.154 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds