Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00409 * 2 1 4 4 H 1.48494 * 109.47430 * 270.00250 * 3 2 1 5 5 H 1.48509 * 109.47152 * 30.00084 * 3 2 1 6 6 H 1.48504 * 109.47291 * 149.99864 * 3 2 1 7 7 C 1.37876 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99590 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00348 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47450 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00085 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99926 * 180.02562 * 11 10 9 14 14 O 1.42901 * 109.46937 * 180.02562 * 13 11 10 15 15 C 1.35905 * 116.99604 * 180.02562 * 14 13 11 16 16 C 1.38723 * 120.05884 * 359.72201 * 15 14 13 17 17 C 1.38145 * 119.94329 * 179.74683 * 16 15 14 18 18 N 1.48023 * 119.97356 * 180.29334 * 17 16 15 19 19 O 1.21801 * 119.99972 * 180.23238 * 18 17 16 20 20 O 1.21800 * 119.99666 * 0.24007 * 18 17 16 21 21 C 1.38260 * 120.05668 * 0.53367 * 17 16 15 22 22 C 1.38268 * 120.10973 * 359.74025 * 21 17 16 23 23 N 1.48026 * 119.96988 * 180.02562 * 22 21 17 24 24 O 1.21803 * 119.99501 * 179.97438 * 23 22 21 25 25 O 1.21795 * 120.00178 * 359.97438 * 23 22 21 26 26 C 1.38139 * 120.05510 * 359.97438 * 22 21 17 27 27 H 0.97004 * 119.99552 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47490 * 59.99414 * 9 7 2 29 29 H 1.09006 * 109.46589 * 299.99976 * 9 7 2 30 30 H 0.96995 * 119.99981 * 0.02562 * 10 9 7 31 31 H 1.08999 * 109.47314 * 60.00033 * 13 11 10 32 32 H 1.08998 * 109.47471 * 300.00068 * 13 11 10 33 33 H 1.08001 * 120.02769 * 0.02562 * 16 15 14 34 34 H 1.08002 * 119.94791 * 179.76675 * 21 17 16 35 35 H 1.08001 * 120.02451 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1129 -1.9000 -0.0006 13 6 5.8270 -4.2426 -0.0008 14 8 7.2561 -4.2426 -0.0002 15 6 7.8729 -5.4536 -0.0012 16 6 7.1185 -6.6178 0.0030 17 6 7.7480 -7.8474 -0.0034 18 7 6.9435 -9.0900 -0.0055 19 8 7.4981 -10.1745 -0.0069 20 8 5.7271 -9.0279 -0.0061 21 6 9.1287 -7.9186 -0.0028 22 6 9.8830 -6.7597 -0.0012 23 7 11.3611 -6.8395 -0.0012 24 8 12.0260 -5.8189 -0.0003 25 8 11.9124 -7.9255 -0.0020 26 6 9.2583 -5.5277 -0.0008 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6809 0.8905 29 1 3.8751 -0.6798 -0.8895 30 1 3.3694 -3.3126 -0.0009 31 1 5.4637 -4.7560 -0.8911 32 1 5.4637 -4.7569 0.8888 33 1 6.0399 -6.5627 0.0066 34 1 9.6190 -8.8809 -0.0040 35 1 9.8479 -4.6228 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849954958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = -58.203624 kcal Electronic energy + Delta-G solvation = -25937.424736 eV Core-core repulsion = 21521.862481 eV Total energy + Delta-G solvation = -4415.562254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.76982 -43.38378 -41.96945 -40.59770 -39.04105 -37.95419 -37.89728 -36.24869 -34.48349 -34.05980 -32.65210 -30.97545 -29.03057 -28.20537 -27.91368 -24.49160 -24.00465 -23.58774 -21.81250 -21.61005 -20.31754 -19.82305 -19.64568 -19.05357 -18.99610 -18.77889 -18.60007 -18.16502 -17.94629 -17.75393 -17.05322 -16.87054 -16.07237 -16.01317 -15.08162 -14.73134 -14.65200 -14.32923 -14.15002 -14.06660 -13.56317 -13.09506 -12.93825 -12.91477 -12.80612 -12.79283 -12.64024 -12.49587 -12.49019 -12.45913 -11.95527 -11.67107 -11.56572 -11.03177 -10.93212 -10.28846 -10.05420 -8.40726 -6.48011 -1.89912 -1.50500 -0.41237 -0.31627 -0.08157 0.09941 1.14475 1.32506 1.36779 1.46051 1.48993 1.51442 2.26834 2.43172 2.72206 2.88060 2.95224 2.96241 2.98148 3.24336 3.52364 3.82970 3.88931 3.94232 4.10454 4.14878 4.23760 4.74484 4.85931 4.92499 4.99697 5.22951 5.37542 5.52776 6.05175 6.16904 6.20299 6.52910 6.69805 7.11491 7.27224 8.73569 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002457 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.818586 B =11395.116258 C =12994.487209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.231 3.769 10 N -0.694 5.694 11 C 0.502 3.498 12 O -0.582 6.582 13 C 0.036 3.964 14 O -0.285 6.285 15 C 0.154 3.846 16 C -0.090 4.090 17 C -0.004 4.004 18 N 0.027 4.973 19 O -0.157 6.157 20 O -0.140 6.140 21 C -0.026 4.026 22 C -0.006 4.006 23 N 0.028 4.972 24 O -0.152 6.152 25 O -0.145 6.145 26 C -0.033 4.033 27 H 0.272 0.728 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.416 0.584 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.203 0.797 34 H 0.192 0.808 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.315 -17.495 -0.001 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.108 3.892 10 N -0.346 5.346 11 C 0.288 3.712 12 O -0.462 6.462 13 C -0.041 4.041 14 O -0.196 6.196 15 C 0.105 3.895 16 C -0.110 4.110 17 C -0.087 4.087 18 N 0.549 4.451 19 O -0.372 6.372 20 O -0.359 6.359 21 C -0.046 4.046 22 C -0.089 4.089 23 N 0.550 4.450 24 O -0.368 6.368 25 O -0.363 6.363 26 C -0.052 4.052 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.253 0.747 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.220 0.780 34 H 0.209 0.791 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 17.449 -15.861 0.003 23.580 hybrid contribution -0.303 0.228 -0.013 0.379 sum 17.146 -15.633 -0.010 23.203 Atomic orbital electron populations 1.69976 1.07700 1.28593 1.50602 1.25571 0.95475 1.02605 0.93724 0.85913 0.79342 0.79585 0.79382 1.19127 1.20227 1.18226 1.21273 0.89836 0.94677 1.52579 0.91712 1.19153 0.93404 0.80555 0.96102 1.45823 1.05958 1.10285 1.72530 1.20578 0.82662 0.91166 0.76807 1.90726 1.56262 1.47792 1.51409 1.22984 0.77738 0.94941 1.08455 1.86278 1.21846 1.24068 1.87446 1.18102 0.90621 0.84414 0.96357 1.21733 1.05013 0.88509 0.95716 1.20291 0.90375 0.84954 1.13088 1.43465 1.01419 1.02321 0.97924 1.94619 1.74192 1.15027 1.53332 1.94609 0.95094 1.93852 1.52361 1.20593 0.91068 1.00848 0.92077 1.20146 0.80244 0.94824 1.13731 1.43414 1.02953 1.00731 0.97898 1.94628 1.63783 1.25265 1.53140 1.94601 1.73140 1.15935 1.52633 1.20628 0.93047 0.98574 0.92990 0.91884 0.96592 0.96693 0.74745 0.84059 0.84083 0.78047 0.79065 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 13.96 21.45 0.30 -52.74 16 2 C 0.03 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.93 41.58 27.47 68.60 1.88 43.46 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.55 -27.60 9.83 25.60 0.25 -27.35 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 C 0.23 10.10 4.50 85.63 0.38 10.49 16 10 N -0.69 -22.30 5.55 -466.79 -2.59 -24.89 16 11 C 0.50 14.57 7.91 87.65 0.69 15.26 16 12 O -0.58 -23.01 16.50 16.02 0.26 -22.74 16 13 C 0.04 0.52 5.22 71.23 0.37 0.89 16 14 O -0.28 -4.93 9.67 -73.44 -0.71 -5.64 16 15 C 0.15 1.82 6.69 22.50 0.15 1.97 16 16 C -0.09 -0.82 8.54 22.36 0.19 -0.63 16 17 C 0.00 -0.04 6.85 36.36 0.25 0.21 16 18 N 0.03 0.44 4.45 -46.50 -0.21 0.23 16 19 O -0.16 -2.88 18.45 18.88 0.35 -2.53 16 20 O -0.14 -2.43 18.45 18.89 0.35 -2.08 16 21 C -0.03 -0.30 9.06 22.28 0.20 -0.09 16 22 C -0.01 -0.08 6.85 36.36 0.25 0.17 16 23 N 0.03 0.50 4.45 -46.49 -0.21 0.29 16 24 O -0.15 -3.02 18.45 18.88 0.35 -2.67 16 25 O -0.14 -2.73 18.45 18.89 0.35 -2.38 16 26 C -0.03 -0.40 9.49 22.36 0.21 -0.19 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.02 0.75 7.20 -2.38 -0.02 0.73 16 29 H 0.02 0.69 7.57 -2.38 -0.02 0.67 16 30 H 0.42 10.64 8.32 -92.71 -0.77 9.86 16 31 H 0.14 1.02 7.67 -2.39 -0.02 1.00 16 32 H 0.14 1.02 7.65 -2.39 -0.02 1.00 16 33 H 0.20 0.87 5.85 -2.91 -0.02 0.86 16 34 H 0.19 1.90 7.15 -2.91 -0.02 1.88 16 35 H 0.19 2.14 7.61 -2.91 -0.02 2.12 16 Total: -1.00 -70.49 332.18 3.91 -66.57 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 0.37 Total: 2.50 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 3.42 Total: 2.63 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.70 Total: -77.11 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: 0.95 Total: -38.05 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Total: -70.49 3.91 -66.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849954958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds