Wall clock time and date at job start Tue Mar 31 2020 14:30:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30743 * 1
3 3 Si 1.86795 * 119.99800 * 2 1
4 4 H 1.48504 * 109.46896 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47193 * 300.00396 * 3 2 1
6 6 H 1.48497 * 109.47422 * 60.00152 * 3 2 1
7 7 C 1.40027 * 119.99831 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99501 * 179.97438 * 7 2 1
9 9 C 1.41331 * 120.00395 * 359.97438 * 7 2 1
10 10 C 1.40606 * 119.78927 * 179.97438 * 9 7 2
11 11 C 1.38312 * 119.13018 * 179.97438 * 10 9 7
12 12 C 1.38691 * 118.67086 * 0.02562 * 11 10 9
13 13 C 1.39646 * 119.49510 * 359.97438 * 12 11 10
14 14 N 1.39254 * 119.57454 * 180.02562 * 13 12 11
15 15 C 1.34769 * 120.00078 * 174.62299 * 14 13 12
16 16 O 1.21582 * 120.00219 * 5.14146 * 15 14 13
17 17 N 1.34775 * 119.99995 * 185.14829 * 15 14 13
18 18 C 1.46499 * 119.99934 * 179.97438 * 17 15 14
19 19 C 1.53001 * 109.47154 * 179.97438 * 18 17 15
20 20 S 1.82847 * 110.31343 * 57.20127 * 19 18 17
21 21 C 1.83102 * 99.46695 * 217.17881 * 20 19 18
22 22 C 1.54495 * 105.03892 * 44.18183 * 21 20 19
23 23 S 1.82118 * 106.98304 * 313.67371 * 22 21 20
24 24 N 1.31928 * 120.84982 * 0.27133 * 13 12 11
25 25 H 0.96999 * 120.00288 * 359.97438 * 1 2 3
26 26 H 1.07999 * 120.43248 * 0.02562 * 10 9 7
27 27 H 1.07996 * 120.66522 * 179.97438 * 11 10 9
28 28 H 1.08003 * 120.25441 * 180.02562 * 12 11 10
29 29 H 0.97003 * 119.99546 * 354.61491 * 14 13 12
30 30 H 0.96996 * 120.00533 * 359.97438 * 17 15 14
31 31 H 1.09001 * 109.47571 * 299.99930 * 18 17 15
32 32 H 1.09009 * 109.47101 * 60.00093 * 18 17 15
33 33 H 1.09006 * 110.27901 * 179.29913 * 19 18 17
34 34 H 1.09004 * 110.26851 * 285.30886 * 21 20 19
35 35 H 1.09001 * 110.44408 * 163.14786 * 21 20 19
36 36 H 1.09003 * 109.95400 * 194.28859 * 22 21 20
37 37 H 1.09002 * 109.98458 * 73.07584 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 3.7014 1.3464 -0.0006
5 1 1.8825 2.3965 -1.2125
6 1 1.8827 2.3964 1.2125
7 6 2.0075 -1.2127 -0.0005
8 1 3.0875 -1.2126 -0.0010
9 6 1.3009 -2.4367 -0.0005
10 6 2.0085 -3.6517 -0.0016
11 6 1.3032 -4.8415 -0.0011
12 6 -0.0828 -4.7935 0.0000
13 6 -0.7279 -3.5549 0.0010
14 7 -2.1195 -3.5047 0.0027
15 6 -2.7509 -2.3192 0.1130
16 8 -2.1091 -1.2866 0.1171
17 7 -4.0939 -2.2783 0.2191
18 6 -4.7802 -0.9897 0.3396
19 6 -6.2887 -1.2230 0.4435
20 16 -6.6663 -2.3119 1.8630
21 6 -8.0407 -3.2826 1.1407
22 6 -7.5700 -3.6438 -0.2858
23 16 -6.8928 -2.1227 -1.0236
24 7 -0.0358 -2.4317 -0.0044
25 1 -0.4850 0.8400 0.0004
26 1 3.0885 -3.6559 -0.0021
27 1 1.8215 -5.7890 -0.0023
28 1 -0.6590 -5.7070 0.0009
29 1 -2.6344 -4.3231 -0.0758
30 1 -4.6060 -3.1020 0.2156
31 1 -4.4297 -0.4734 1.2334
32 1 -4.5667 -0.3807 -0.5389
33 1 -6.8119 -0.2722 0.5463
34 1 -8.9478 -2.6795 1.0990
35 1 -8.2147 -4.1875 1.7228
36 1 -8.4136 -4.0005 -0.8767
37 1 -6.7972 -4.4112 -0.2399
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881141943.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:51
Heat of formation + Delta-G solvation = 45.543006 kcal
Electronic energy + Delta-G solvation = -22745.311419 eV
Core-core repulsion = 19355.586793 eV
Total energy + Delta-G solvation = -3389.724626 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.066 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-39.39295 -37.70049 -35.08366 -33.89284 -33.50542 -32.90492 -30.56240 -30.14792
-28.57454 -25.47486 -24.23014 -23.62956 -21.82657 -21.10216 -19.81269 -18.03200
-17.46184 -17.04293 -16.95528 -16.10335 -15.89662 -14.91000 -14.73028 -14.53806
-14.36006 -14.16292 -13.87809 -13.55227 -13.35109 -13.09298 -12.86121 -12.73434
-12.17619 -12.07322 -11.85609 -11.58755 -11.18825 -11.11206 -10.87605 -10.56633
-10.40127 -10.01342 -9.84504 -9.62240 -9.05484 -8.95851 -8.47932 -8.21211
-8.10888 -7.87745 -7.13329 -6.85994 -6.03784 -4.31916 0.77596 1.17657
1.36821 2.27297 2.90509 3.19537 3.22489 3.25936 3.30594 3.33160
3.94492 4.12851 4.28334 4.31247 4.36055 4.70745 4.81525 4.94865
4.98268 5.02814 5.14425 5.63394 5.77305 6.12801 6.16483 6.54931
6.68569 6.86640 6.91762 6.98556 7.30953 7.44007 7.69570 7.82247
7.88733 8.24916 8.37646 8.74494 8.87872 9.13825 9.68195 10.35114
10.57045
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.016271 B = 0.003644 C = 0.003150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1720.406594 B = 7682.220174 C = 8886.421501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.648 5.648
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.263 1.263
5 H -0.276 1.276
6 H -0.276 1.276
7 C -0.426 4.426
8 H 0.082 0.918
9 C 0.271 3.729
10 C -0.307 4.307
11 C -0.036 4.036
12 C -0.358 4.358
13 C 0.388 3.612
14 N -0.672 5.672
15 C 0.667 3.333
16 O -0.465 6.465
17 N -0.748 5.748
18 C 0.174 3.826
19 C -0.028 4.028
20 S -0.228 6.228
21 C -0.089 4.089
22 C -0.091 4.091
23 S -0.235 6.235
24 N -0.471 5.471
25 H 0.270 0.730
26 H 0.095 0.905
27 H 0.095 0.905
28 H 0.090 0.910
29 H 0.394 0.606
30 H 0.386 0.614
31 H 0.082 0.918
32 H 0.086 0.914
33 H 0.136 0.864
34 H 0.101 0.899
35 H 0.126 0.874
36 H 0.120 0.880
37 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.728 -4.777 0.945 19.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.266 5.266
2 C -0.173 4.173
3 Si 0.718 3.282
4 H -0.187 1.187
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.457 4.457
8 H 0.100 0.900
9 C 0.146 3.854
10 C -0.331 4.331
11 C -0.060 4.060
12 C -0.385 4.385
13 C 0.148 3.852
14 N -0.320 5.320
15 C 0.365 3.635
16 O -0.329 6.329
17 N -0.410 5.410
18 C 0.046 3.954
19 C -0.267 4.267
20 S -0.001 6.001
21 C -0.240 4.240
22 C -0.241 4.241
23 S -0.010 6.010
24 N -0.189 5.189
25 H 0.082 0.918
26 H 0.113 0.887
27 H 0.113 0.887
28 H 0.108 0.892
29 H 0.227 0.773
30 H 0.221 0.779
31 H 0.100 0.900
32 H 0.104 0.896
33 H 0.153 0.847
34 H 0.119 0.881
35 H 0.144 0.856
36 H 0.138 0.862
37 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -18.224 -2.483 0.938 18.416
hybrid contribution -0.478 -1.276 0.083 1.365
sum -18.702 -3.758 1.021 19.103
Atomic orbital electron populations
1.70366 1.05553 1.27105 1.23585 1.26188 0.95123 1.00472 0.95479
0.86504 0.80937 0.82495 0.78289 1.18657 1.20137 1.20141 1.19598
0.94020 0.89391 1.42655 0.90013 1.18400 0.87190 0.91933 0.87860
1.21617 0.98496 0.93573 1.19381 1.20532 0.93124 0.96474 0.95887
1.20434 0.94734 0.94806 1.28482 1.18338 0.82450 0.90865 0.93511
1.42504 1.05155 1.07828 1.76484 1.16342 0.81099 0.85520 0.80512
1.91388 1.62361 1.29846 1.49327 1.45185 1.05762 1.07735 1.82333
1.20715 0.84497 0.86907 1.03310 1.26155 1.03591 1.03660 0.93269
1.88104 1.43661 1.44627 1.23751 1.24538 0.99658 1.03179 0.96585
1.24423 1.04552 0.98431 0.96732 1.87505 1.77210 1.20782 1.15488
1.68700 1.06810 1.23125 1.20291 0.91770 0.88657 0.88705 0.89219
0.77330 0.77930 0.89990 0.89601 0.84659 0.88067 0.85633 0.86173
0.87837
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.65 -18.36 8.98 55.55 0.50 -17.86 16
2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16
3 Si 0.89 19.66 29.56 -169.99 -5.02 14.64 16
4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16
5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
7 C -0.43 -11.99 9.14 -37.74 -0.34 -12.33 16
8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16
9 C 0.27 7.81 6.55 -85.00 -0.56 7.25 16
10 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16
11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16
12 C -0.36 -8.25 9.95 -38.89 -0.39 -8.63 16
13 C 0.39 9.74 7.43 -154.98 -1.15 8.59 16
14 N -0.67 -13.76 5.39 -15.79 -0.09 -13.84 16
15 C 0.67 14.00 8.52 -86.93 -0.74 13.26 16
16 O -0.46 -12.04 12.10 5.29 0.06 -11.98 16
17 N -0.75 -11.50 4.99 -65.23 -0.33 -11.82 16
18 C 0.17 2.39 5.42 -4.04 -0.02 2.37 16
19 C -0.03 -0.28 3.87 37.16 0.14 -0.14 16
20 S -0.23 -2.25 21.39 -104.32 -2.23 -4.48 16
21 C -0.09 -0.54 7.05 37.94 0.27 -0.27 16
22 C -0.09 -0.58 6.85 37.94 0.26 -0.32 16
23 S -0.24 -2.32 21.48 -104.32 -2.24 -4.57 16
24 N -0.47 -13.54 5.74 -10.26 -0.06 -13.60 16
25 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16
26 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16
27 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16
28 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16
29 H 0.39 6.31 8.71 -40.82 -0.36 5.96 16
30 H 0.39 5.02 7.35 -40.82 -0.30 4.72 16
31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16
32 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16
33 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16
35 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16
LS Contribution 334.58 15.07 5.04 5.04
Total: -1.00 -34.17 334.58 -12.20 -46.37
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: -4.43 Total: 10.45 kcal
Atomic # 6 Polarization: 5.06 SS G_CDS: -3.41 Total: 1.65 kcal
Atomic # 7 Polarization: -57.16 SS G_CDS: 0.03 Total: -57.13 kcal
Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.98 kcal
Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal
Atomic # 16 Polarization: -4.57 SS G_CDS: -4.47 Total: -9.05 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -34.17 -12.20 -46.37 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881141943.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.916 kcal
(2) G-P(sol) polarization free energy of solvation -34.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds