Wall clock time and date at job start Tue Mar 31 2020 14:30:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30743 * 1
3 3 Si 1.86795 * 119.99800 * 2 1
4 4 H 1.48504 * 109.46896 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47193 * 300.00396 * 3 2 1
6 6 H 1.48497 * 109.47422 * 60.00152 * 3 2 1
7 7 C 1.40027 * 119.99831 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99501 * 179.97438 * 7 2 1
9 9 C 1.41331 * 120.00395 * 359.97438 * 7 2 1
10 10 C 1.40606 * 119.78927 * 179.97438 * 9 7 2
11 11 C 1.38312 * 119.13018 * 179.97438 * 10 9 7
12 12 C 1.38691 * 118.67086 * 0.02562 * 11 10 9
13 13 C 1.39646 * 119.49510 * 359.97438 * 12 11 10
14 14 N 1.39254 * 119.57454 * 180.02562 * 13 12 11
15 15 C 1.34769 * 120.00078 * 174.62299 * 14 13 12
16 16 O 1.21582 * 120.00219 * 5.14146 * 15 14 13
17 17 N 1.34775 * 119.99995 * 185.14829 * 15 14 13
18 18 C 1.46499 * 119.99934 * 179.97438 * 17 15 14
19 19 C 1.53001 * 109.47154 * 179.97438 * 18 17 15
20 20 S 1.82847 * 110.31343 * 57.20127 * 19 18 17
21 21 C 1.83102 * 99.46695 * 217.17881 * 20 19 18
22 22 C 1.54495 * 105.03892 * 44.18183 * 21 20 19
23 23 S 1.82118 * 106.98304 * 313.67371 * 22 21 20
24 24 N 1.31928 * 120.84982 * 0.27133 * 13 12 11
25 25 H 0.96999 * 120.00288 * 359.97438 * 1 2 3
26 26 H 1.07999 * 120.43248 * 0.02562 * 10 9 7
27 27 H 1.07996 * 120.66522 * 179.97438 * 11 10 9
28 28 H 1.08003 * 120.25441 * 180.02562 * 12 11 10
29 29 H 0.97003 * 119.99546 * 354.61491 * 14 13 12
30 30 H 0.96996 * 120.00533 * 359.97438 * 17 15 14
31 31 H 1.09001 * 109.47571 * 299.99930 * 18 17 15
32 32 H 1.09009 * 109.47101 * 60.00093 * 18 17 15
33 33 H 1.09006 * 110.27901 * 179.29913 * 19 18 17
34 34 H 1.09004 * 110.26851 * 285.30886 * 21 20 19
35 35 H 1.09001 * 110.44408 * 163.14786 * 21 20 19
36 36 H 1.09003 * 109.95400 * 194.28859 * 22 21 20
37 37 H 1.09002 * 109.98458 * 73.07584 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 3.7014 1.3464 -0.0006
5 1 1.8825 2.3965 -1.2125
6 1 1.8827 2.3964 1.2125
7 6 2.0075 -1.2127 -0.0005
8 1 3.0875 -1.2126 -0.0010
9 6 1.3009 -2.4367 -0.0005
10 6 2.0085 -3.6517 -0.0016
11 6 1.3032 -4.8415 -0.0011
12 6 -0.0828 -4.7935 0.0000
13 6 -0.7279 -3.5549 0.0010
14 7 -2.1195 -3.5047 0.0027
15 6 -2.7509 -2.3192 0.1130
16 8 -2.1091 -1.2866 0.1171
17 7 -4.0939 -2.2783 0.2191
18 6 -4.7802 -0.9897 0.3396
19 6 -6.2887 -1.2230 0.4435
20 16 -6.6663 -2.3119 1.8630
21 6 -8.0407 -3.2826 1.1407
22 6 -7.5700 -3.6438 -0.2858
23 16 -6.8928 -2.1227 -1.0236
24 7 -0.0358 -2.4317 -0.0044
25 1 -0.4850 0.8400 0.0004
26 1 3.0885 -3.6559 -0.0021
27 1 1.8215 -5.7890 -0.0023
28 1 -0.6590 -5.7070 0.0009
29 1 -2.6344 -4.3231 -0.0758
30 1 -4.6060 -3.1020 0.2156
31 1 -4.4297 -0.4734 1.2334
32 1 -4.5667 -0.3807 -0.5389
33 1 -6.8119 -0.2722 0.5463
34 1 -8.9478 -2.6795 1.0990
35 1 -8.2147 -4.1875 1.7228
36 1 -8.4136 -4.0005 -0.8767
37 1 -6.7972 -4.4112 -0.2399
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000881141943.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:51
Heat of formation + Delta-G solvation = 23.919527 kcal
Electronic energy + Delta-G solvation = -22746.249083 eV
Core-core repulsion = 19355.586793 eV
Total energy + Delta-G solvation = -3390.662291 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.066 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.09431 -39.52003 -36.49706 -35.69504 -34.79727 -34.07498 -32.22269 -31.80950
-30.30942 -27.42260 -24.99509 -24.63747 -23.55203 -22.96153 -21.47219 -19.81116
-18.89369 -18.30188 -17.80743 -17.75349 -16.63995 -16.49863 -16.23567 -16.08690
-15.91169 -15.60627 -14.99177 -14.79848 -14.66458 -14.55899 -14.34514 -13.85583
-13.65869 -13.49023 -12.96711 -12.91020 -12.69612 -12.58016 -12.51099 -12.28679
-11.81437 -11.71913 -11.49424 -10.85419 -10.84501 -10.72903 -9.91065 -9.81543
-9.08692 -9.01598 -8.92136 -8.74316 -7.99161 -6.38078 0.06820 0.38361
0.75374 0.99477 1.31453 1.40620 1.53520 1.55357 1.62857 1.81579
2.28641 2.60240 3.07088 3.30011 3.38388 3.46315 3.93110 4.03511
4.10939 4.38085 4.40864 4.42965 4.53706 4.57617 4.68641 4.77064
4.89412 4.99643 5.09587 5.30219 5.61388 5.70166 5.88760 5.95378
6.05649 6.33665 6.45333 6.85282 7.10730 7.26593 8.03828 8.41788
8.61710
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.016271 B = 0.003644 C = 0.003150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1720.406594 B = 7682.220174 C = 8886.421501
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.685 5.685
2 C 0.010 3.990
3 Si 0.973 3.027
4 H -0.254 1.254
5 H -0.271 1.271
6 H -0.272 1.272
7 C -0.467 4.467
8 H 0.085 0.915
9 C 0.237 3.763
10 C -0.331 4.331
11 C -0.033 4.033
12 C -0.345 4.345
13 C 0.365 3.635
14 N -0.660 5.660
15 C 0.661 3.339
16 O -0.516 6.516
17 N -0.723 5.723
18 C 0.175 3.825
19 C -0.012 4.012
20 S -0.272 6.272
21 C -0.070 4.070
22 C -0.078 4.078
23 S -0.275 6.275
24 N -0.506 5.506
25 H 0.268 0.732
26 H 0.104 0.896
27 H 0.138 0.862
28 H 0.132 0.868
29 H 0.416 0.584
30 H 0.401 0.599
31 H 0.064 0.936
32 H 0.070 0.930
33 H 0.148 0.852
34 H 0.115 0.885
35 H 0.151 0.849
36 H 0.148 0.852
37 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.458 -6.808 0.999 21.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.304 5.304
2 C -0.216 4.216
3 Si 0.794 3.206
4 H -0.177 1.177
5 H -0.196 1.196
6 H -0.197 1.197
7 C -0.498 4.498
8 H 0.103 0.897
9 C 0.112 3.888
10 C -0.354 4.354
11 C -0.057 4.057
12 C -0.371 4.371
13 C 0.125 3.875
14 N -0.310 5.310
15 C 0.359 3.641
16 O -0.384 6.384
17 N -0.385 5.385
18 C 0.047 3.953
19 C -0.250 4.250
20 S -0.046 6.046
21 C -0.220 4.220
22 C -0.229 4.229
23 S -0.049 6.049
24 N -0.225 5.225
25 H 0.079 0.921
26 H 0.122 0.878
27 H 0.155 0.845
28 H 0.150 0.850
29 H 0.252 0.748
30 H 0.238 0.762
31 H 0.083 0.917
32 H 0.088 0.912
33 H 0.166 0.834
34 H 0.134 0.866
35 H 0.169 0.831
36 H 0.166 0.834
37 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -20.025 -4.583 0.991 20.567
hybrid contribution -0.091 -0.899 0.066 0.906
sum -20.116 -5.482 1.057 20.877
Atomic orbital electron populations
1.70572 1.07135 1.27706 1.24962 1.27039 0.96006 1.03931 0.94583
0.85301 0.79638 0.77324 0.78304 1.17719 1.19629 1.19684 1.19913
0.94379 0.90497 1.44996 0.89709 1.18890 0.87941 0.93403 0.88612
1.21806 0.99180 0.93870 1.20577 1.21016 0.93461 0.97310 0.93945
1.20913 0.95145 0.95523 1.25518 1.18844 0.84112 0.91119 0.93395
1.42342 1.03896 1.08842 1.75954 1.16616 0.82436 0.84961 0.80082
1.91379 1.63951 1.31575 1.51537 1.44878 1.03879 1.09144 1.80597
1.20674 0.87033 0.85719 1.01837 1.25903 1.00627 1.04810 0.93708
1.88265 1.46360 1.45519 1.24505 1.24654 0.97939 1.03391 0.95988
1.24548 1.05439 0.96005 0.96873 1.87670 1.77555 1.23355 1.16358
1.68656 1.07200 1.25339 1.21333 0.92106 0.87807 0.84453 0.85034
0.74755 0.76184 0.91743 0.91202 0.83404 0.86628 0.83089 0.83427
0.87233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.68 -40.81 8.98 21.84 0.20 -40.61 16
2 C 0.01 0.56 5.50 85.29 0.47 1.03 16
3 Si 0.97 42.00 29.56 68.60 2.03 44.03 16
4 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16
5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16
6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
7 C -0.47 -27.38 9.14 23.47 0.21 -27.17 16
8 H 0.08 4.67 7.85 -2.91 -0.02 4.64 16
9 C 0.24 14.10 6.55 40.20 0.26 14.37 16
10 C -0.33 -17.17 9.83 22.87 0.22 -16.94 16
11 C -0.03 -1.47 10.15 22.40 0.23 -1.24 16
12 C -0.35 -15.09 9.95 22.72 0.23 -14.86 16
13 C 0.37 18.28 7.43 133.24 0.99 19.27 16
14 N -0.66 -26.75 5.39 -322.14 -1.74 -28.49 16
15 C 0.66 28.34 8.52 179.06 1.53 29.86 16
16 O -0.52 -28.06 12.10 -3.97 -0.05 -28.11 16
17 N -0.72 -22.33 4.99 -478.54 -2.39 -24.72 16
18 C 0.18 4.99 5.42 86.38 0.47 5.46 16
19 C -0.01 -0.23 3.87 71.98 0.28 0.04 16
20 S -0.27 -4.97 21.39 -49.98 -1.07 -6.04 16
21 C -0.07 -0.60 7.05 72.49 0.51 -0.08 16
22 C -0.08 -0.73 6.85 72.49 0.50 -0.23 16
23 S -0.27 -5.01 21.48 -49.98 -1.07 -6.08 16
24 N -0.51 -30.03 5.74 -186.37 -1.07 -31.10 16
25 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16
26 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16
27 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16
28 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16
29 H 0.42 12.51 8.71 -92.71 -0.81 11.71 16
30 H 0.40 9.98 7.35 -92.71 -0.68 9.29 16
31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
32 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16
33 H 0.15 2.55 8.14 -2.38 -0.02 2.53 16
34 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16
35 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16
37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16
Total: -1.00 -78.99 334.58 0.36 -78.62
By element:
Atomic # 1 Polarization: 33.35 SS G_CDS: -0.37 Total: 32.99 kcal
Atomic # 6 Polarization: 3.62 SS G_CDS: 5.89 Total: 9.51 kcal
Atomic # 7 Polarization: -119.93 SS G_CDS: -5.00 Total: -124.92 kcal
Atomic # 8 Polarization: -28.06 SS G_CDS: -0.05 Total: -28.11 kcal
Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal
Atomic # 16 Polarization: -9.98 SS G_CDS: -2.14 Total: -12.12 kcal
Total: -78.99 0.36 -78.62 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881141943.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.543 kcal
(2) G-P(sol) polarization free energy of solvation -78.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds