Wall clock time and date at job start Tue Mar 31 2020 14:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 Cl 1.73594 * 120.00331 * 2 1 4 4 C 1.33366 * 119.99654 * 180.02562 * 2 1 3 5 5 C 1.46798 * 120.00000 * 180.02562 * 4 2 1 6 6 O 1.21674 * 119.99988 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99932 * 179.97438 * 5 4 2 8 8 C 1.40055 * 119.99680 * 185.66271 * 7 5 4 9 9 C 1.38670 * 120.10357 * 19.76386 * 8 7 5 10 10 C 1.38253 * 120.00552 * 179.74531 * 9 8 7 11 11 C 1.38299 * 120.20977 * 0.25031 * 10 9 8 12 12 C 1.38197 * 120.20576 * 0.02562 * 11 10 9 13 13 C 1.38781 * 119.99243 * 0.02562 * 12 11 10 14 14 S 1.76196 * 120.10324 * 180.02562 * 13 12 11 15 15 C 1.81399 * 103.00459 * 354.77302 * 14 13 12 16 16 H 1.09001 * 109.47057 * 51.79120 * 15 14 13 17 17 C 1.53004 * 109.46910 * 291.79199 * 15 14 13 18 18 C 1.50695 * 109.47311 * 171.79252 * 15 14 13 19 19 H 1.08001 * 119.99745 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99875 * 179.97438 * 18 15 14 21 21 N 1.31512 * 120.00567 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99879 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47086 * 120.00313 * 22 20 18 25 25 H 1.48496 * 109.47247 * 240.00327 * 22 20 18 26 26 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46846 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46780 * 59.99551 * 1 2 3 29 29 H 1.08004 * 119.99616 * 359.97438 * 4 2 1 30 30 H 0.96993 * 119.99903 * 5.66470 * 7 5 4 31 31 H 1.08000 * 119.99932 * 0.02562 * 9 8 7 32 32 H 1.08003 * 119.89399 * 180.23267 * 10 9 8 33 33 H 1.08007 * 119.89344 * 179.97438 * 11 10 9 34 34 H 1.08003 * 120.00603 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47514 * 303.56554 * 17 15 14 36 36 H 1.09005 * 109.46861 * 63.56624 * 17 15 14 37 37 H 1.09000 * 109.46774 * 183.56202 * 17 15 14 38 38 H 0.96993 * 120.00518 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3751 1.5033 0.0000 4 6 2.1738 -1.1550 -0.0005 5 6 3.6418 -1.1551 0.0001 6 8 4.2502 -0.1014 0.0005 7 7 4.3156 -2.3224 0.0001 8 6 5.7110 -2.3254 0.1203 9 6 6.3667 -1.2194 0.6396 10 6 7.7437 -1.2266 0.7623 11 6 8.4721 -2.3326 0.3636 12 6 7.8280 -3.4373 -0.1604 13 6 6.4461 -3.4388 -0.2883 14 16 5.6219 -4.8459 -0.9554 15 6 6.9931 -5.9226 -1.4567 16 1 7.6805 -6.0487 -0.6202 17 6 7.7347 -5.2886 -2.6353 18 6 6.4513 -7.2671 -1.8687 19 1 5.3884 -7.4550 -1.8330 20 6 7.3125 -8.2570 -2.2922 21 7 8.6069 -8.0281 -2.3361 22 14 6.6411 -9.9239 -2.8022 23 1 5.1627 -9.9259 -2.6621 24 1 7.0041 -10.1919 -4.2170 25 1 7.2225 -10.9786 -1.9336 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6336 -2.0903 -0.0005 30 1 3.8341 -3.1603 -0.0832 31 1 5.8013 -0.3541 0.9525 32 1 8.2523 -0.3657 1.1705 33 1 9.5478 -2.3325 0.4613 34 1 8.4000 -4.2994 -0.4704 35 1 7.0334 -5.1043 -3.4491 36 1 8.1804 -4.3454 -2.3191 37 1 8.5186 -5.9644 -2.9771 38 1 9.2127 -8.7246 -2.6337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900636159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:11 Heat of formation + Delta-G solvation = 6.639704 kcal Electronic energy + Delta-G solvation = -22047.684015 eV Core-core repulsion = 18621.935957 eV Total energy + Delta-G solvation = -3425.748057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41053 -38.23668 -36.87495 -34.72540 -34.18880 -34.11618 -31.11764 -29.96970 -29.80349 -27.99161 -25.40863 -23.37534 -22.59336 -21.52522 -20.86740 -19.82189 -18.10538 -17.34995 -16.69282 -16.15299 -15.29971 -15.21891 -15.06014 -14.59743 -14.23964 -14.14568 -13.94577 -13.53499 -13.39194 -12.92057 -12.80737 -12.55501 -12.51157 -12.03227 -11.85898 -11.75635 -11.47410 -11.10930 -11.05147 -10.99074 -10.63193 -10.52885 -10.27736 -10.04252 -9.49070 -9.45508 -9.26898 -9.09253 -8.97387 -8.54871 -7.90277 -6.55808 -6.25938 -4.35680 0.78376 1.66062 1.79215 1.94681 2.42387 3.11545 3.16326 3.17973 3.26265 3.30674 3.59661 4.17840 4.25710 4.30481 4.82911 4.83673 5.04107 5.06173 5.27938 5.35885 5.39922 5.52914 5.61227 5.71649 5.85750 5.90491 6.26103 6.51064 6.53250 6.63940 6.71233 6.76233 6.78604 6.92100 7.27345 7.36044 7.52999 7.56687 7.73431 7.97541 8.14830 8.63506 9.28891 10.79825 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.003129 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.659962 B = 8945.015744 C =10315.381347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.001 3.999 3 Cl -0.039 7.039 4 C -0.209 4.209 5 C 0.537 3.463 6 O -0.506 6.506 7 N -0.652 5.652 8 C 0.152 3.848 9 C -0.126 4.126 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.114 4.114 13 C -0.094 4.094 14 S -0.180 6.180 15 C 0.103 3.897 16 H 0.052 0.948 17 C -0.147 4.147 18 C -0.511 4.511 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.414 0.586 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.039 0.961 36 H 0.022 0.978 37 H 0.097 0.903 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 14.092 5.677 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.028 4.028 3 Cl -0.010 7.010 4 C -0.231 4.231 5 C 0.327 3.673 6 O -0.383 6.383 7 N -0.295 5.295 8 C 0.051 3.949 9 C -0.148 4.148 10 C -0.144 4.144 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.210 4.210 14 S 0.067 5.933 15 C -0.024 4.024 16 H 0.069 0.931 17 C -0.206 4.206 18 C -0.550 4.550 19 H 0.086 0.914 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.168 0.832 30 H 0.251 0.749 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.115 0.885 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.267 14.539 5.481 19.796 hybrid contribution 0.986 -1.154 -0.264 1.541 sum -11.280 13.385 5.217 18.265 Atomic orbital electron populations 1.21143 0.88032 1.04574 1.04115 1.24187 0.95287 0.87930 0.95404 1.98440 1.76083 1.31110 1.95348 1.22632 0.93929 0.98359 1.08135 1.18395 0.88008 0.83593 0.77346 1.90816 1.69420 1.30538 1.47562 1.43410 1.05648 1.09697 1.70768 1.17248 0.81878 0.94824 1.00965 1.21472 0.94758 0.98481 1.00040 1.20961 0.93635 0.98237 1.01523 1.21030 0.99601 0.93560 1.00118 1.21305 0.92672 0.99678 1.00179 1.21703 0.96611 0.98499 1.04149 1.84932 1.21575 1.12994 1.73829 1.21071 0.90330 0.93395 0.97609 0.93059 1.22170 1.01676 0.98367 0.98395 1.20663 0.94158 0.94521 1.45692 0.91441 1.24891 0.94736 0.98931 0.94803 1.69860 1.02030 1.33934 1.46452 0.86295 0.79303 0.82780 0.78284 1.19481 1.20694 1.20693 0.89570 0.89607 0.89554 0.83226 0.74907 0.83059 0.86297 0.86294 0.84396 0.94215 0.95876 0.88508 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.21 36.01 0.37 -0.29 16 2 C 0.00 0.01 6.56 -36.01 -0.24 -0.23 16 3 Cl -0.04 -0.45 25.80 -51.86 -1.34 -1.79 16 4 C -0.21 -2.13 9.64 -37.83 -0.36 -2.50 16 5 C 0.54 7.61 7.59 -12.80 -0.10 7.51 16 6 O -0.51 -8.28 10.62 5.21 0.06 -8.22 16 7 N -0.65 -9.86 5.23 -10.86 -0.06 -9.92 16 8 C 0.15 2.67 6.51 -83.46 -0.54 2.13 16 9 C -0.13 -2.11 8.78 -39.42 -0.35 -2.46 16 10 C -0.12 -1.88 10.04 -39.55 -0.40 -2.27 16 11 C -0.12 -1.98 10.04 -39.57 -0.40 -2.38 16 12 C -0.11 -2.14 8.01 -39.40 -0.32 -2.45 16 13 C -0.09 -1.82 6.05 -38.90 -0.24 -2.05 16 14 S -0.18 -3.74 19.89 -107.50 -2.14 -5.88 16 15 C 0.10 2.49 1.98 -27.88 -0.06 2.43 16 16 H 0.05 1.32 7.00 -51.92 -0.36 0.96 16 17 C -0.15 -3.43 8.58 37.16 0.32 -3.11 16 18 C -0.51 -13.40 8.58 -34.44 -0.30 -13.69 16 19 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 21 N -0.89 -23.75 11.30 55.43 0.63 -23.13 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.09 0.34 7.81 -51.93 -0.41 -0.07 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.15 1.08 7.87 -52.48 -0.41 0.66 16 30 H 0.41 5.72 7.50 -40.82 -0.31 5.41 16 31 H 0.15 2.52 5.43 -52.49 -0.28 2.24 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.14 2.76 4.77 -52.48 -0.25 2.51 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.49 5.74 -51.93 -0.30 0.19 16 37 H 0.10 2.46 5.98 -51.93 -0.31 2.14 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -29.17 340.21 -9.72 -38.90 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.29 Total: 7.26 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.69 Total: -17.61 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.57 Total: -33.05 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.06 Total: -8.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.14 Total: -5.88 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.34 Total: -1.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.17 -9.72 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900636159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.535 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds