Wall clock time and date at job start Tue Mar 31 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 Cl 1.73601 * 120.00174 * 2 1 4 4 C 1.33361 * 120.00024 * 179.97438 * 2 1 3 5 5 C 1.46806 * 120.00205 * 179.97438 * 4 2 1 6 6 O 1.21667 * 119.99939 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00349 * 180.27314 * 5 4 2 8 8 C 1.40047 * 120.00263 * 175.47306 * 7 5 4 9 9 C 1.38670 * 120.10297 * 34.55725 * 8 7 5 10 10 C 1.38254 * 120.00666 * 179.72046 * 9 8 7 11 11 C 1.38297 * 120.20861 * 0.55406 * 10 9 8 12 12 C 1.38206 * 120.20783 * 359.72248 * 11 10 9 13 13 C 1.38778 * 119.98588 * 359.97438 * 12 11 10 14 14 S 1.76205 * 120.10073 * 179.97438 * 13 12 11 15 15 C 1.81399 * 102.99963 * 4.49659 * 14 13 12 16 16 H 1.08992 * 109.47282 * 49.62445 * 15 14 13 17 17 C 1.53004 * 109.46786 * 169.62123 * 15 14 13 18 18 C 1.50698 * 109.47149 * 289.61764 * 15 14 13 19 19 H 1.08003 * 120.00056 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99975 * 179.97438 * 18 15 14 21 21 N 1.31515 * 120.00073 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00044 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46864 * 120.00267 * 22 20 18 25 25 H 1.48502 * 109.46884 * 240.00107 * 22 20 18 26 26 H 1.09002 * 109.47354 * 239.99901 * 1 2 3 27 27 H 1.09001 * 109.46958 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46998 * 119.99908 * 1 2 3 29 29 H 1.08006 * 120.00031 * 0.02562 * 4 2 1 30 30 H 0.97007 * 119.99325 * 355.47003 * 7 5 4 31 31 H 1.08001 * 119.99295 * 359.97438 * 9 8 7 32 32 H 1.07993 * 119.89203 * 180.27644 * 10 9 8 33 33 H 1.08003 * 119.89959 * 179.74461 * 11 10 9 34 34 H 1.07997 * 120.00404 * 179.97438 * 12 11 10 35 35 H 1.08997 * 109.47141 * 65.13926 * 17 15 14 36 36 H 1.09004 * 109.47159 * 185.13985 * 17 15 14 37 37 H 1.09001 * 109.47355 * 305.14042 * 17 15 14 38 38 H 0.97000 * 120.00341 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5034 0.0000 4 6 2.1738 -1.1549 0.0005 5 6 3.6418 -1.1550 -0.0001 6 8 4.2502 -0.1013 -0.0005 7 7 4.3158 -2.3222 -0.0051 8 6 5.7129 -2.3237 -0.1014 9 6 6.4522 -1.3130 0.4943 10 6 7.8317 -1.3196 0.4030 11 6 8.4783 -2.3259 -0.2912 12 6 7.7498 -3.3344 -0.8931 13 6 6.3651 -3.3394 -0.8014 14 16 5.4333 -4.6234 -1.5682 15 6 6.7175 -5.7328 -2.2088 16 1 7.4377 -5.9488 -1.4198 17 6 6.0741 -7.0375 -2.6831 18 6 7.4221 -5.0709 -3.3649 19 1 7.1266 -4.0820 -3.6827 20 6 8.4441 -5.7280 -4.0168 21 7 8.8036 -6.9324 -3.6301 22 14 9.3180 -4.9073 -5.4493 23 1 8.7299 -3.5640 -5.6841 24 1 10.7622 -4.7665 -5.1331 25 1 9.1571 -5.7387 -6.6692 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8901 29 1 1.6338 -2.0903 0.0005 30 1 3.8330 -3.1612 0.0580 31 1 5.9505 -0.5228 1.0332 32 1 8.4059 -0.5340 0.8714 33 1 9.5560 -2.3239 -0.3629 34 1 8.2581 -4.1184 -1.4348 35 1 5.4224 -6.8333 -3.5326 36 1 6.8530 -7.7387 -2.9829 37 1 5.4887 -7.4699 -1.8717 38 1 9.5228 -7.3946 -4.0884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900636160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:15 Heat of formation + Delta-G solvation = 1.572773 kcal Electronic energy + Delta-G solvation = -22247.728304 eV Core-core repulsion = 18821.760528 eV Total energy + Delta-G solvation = -3425.967776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22425 -38.11202 -36.79766 -34.60264 -34.09816 -34.07455 -30.65076 -30.20282 -29.71590 -27.92784 -25.42839 -23.27996 -22.41745 -21.61976 -20.55449 -19.72205 -17.86010 -17.09452 -16.58957 -16.31284 -15.24303 -15.10323 -15.00457 -14.53615 -14.18825 -14.14159 -13.70456 -13.44176 -13.32800 -13.01421 -12.75926 -12.48607 -12.42320 -11.84219 -11.80470 -11.61759 -11.42565 -11.07381 -11.01382 -10.83498 -10.54303 -10.41518 -10.25815 -9.89616 -9.43821 -9.36185 -9.30360 -9.04443 -8.92302 -8.54918 -7.84426 -6.56737 -6.17430 -4.31943 0.87143 1.76724 1.95349 2.01226 2.54669 3.16020 3.19862 3.28898 3.32036 3.34635 3.61570 4.28870 4.30087 4.37323 4.86722 4.96347 5.07265 5.07726 5.33872 5.48315 5.56363 5.57710 5.72348 5.81080 5.99306 6.09211 6.45389 6.53812 6.66620 6.69040 6.73847 6.80773 6.98293 7.10411 7.26241 7.50610 7.54016 7.60357 7.75777 7.96496 8.27102 8.70388 9.33123 10.81342 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.003373 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.471513 B = 8299.717487 C = 8802.605824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 Cl -0.039 7.039 4 C -0.209 4.209 5 C 0.537 3.463 6 O -0.508 6.508 7 N -0.656 5.656 8 C 0.143 3.857 9 C -0.113 4.113 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.102 4.102 13 C -0.076 4.076 14 S -0.193 6.193 15 C 0.096 3.904 16 H 0.052 0.948 17 C -0.125 4.125 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.886 5.886 22 Si 0.896 3.104 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.282 1.282 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.410 0.590 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.158 0.842 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 9.208 9.053 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 Cl -0.010 7.010 4 C -0.231 4.231 5 C 0.327 3.673 6 O -0.385 6.385 7 N -0.301 5.301 8 C 0.043 3.957 9 C -0.134 4.134 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.126 4.126 13 C -0.192 4.192 14 S 0.053 5.947 15 C -0.031 4.031 16 H 0.069 0.931 17 C -0.184 4.184 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.723 3.277 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.208 1.208 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.167 0.833 30 H 0.247 0.753 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.175 0.825 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.569 9.693 8.846 18.877 hybrid contribution 1.720 0.069 -0.814 1.904 sum -11.849 9.763 8.032 17.327 Atomic orbital electron populations 1.21151 0.88087 1.04598 1.04073 1.24186 0.95203 0.87933 0.95571 1.98441 1.76333 1.30991 1.95264 1.22566 0.94066 0.98330 1.08103 1.18360 0.87886 0.83752 0.77345 1.90891 1.69703 1.30312 1.47568 1.43312 1.05405 1.09342 1.72014 1.17182 0.81797 0.97088 0.99682 1.21019 0.93623 0.98555 1.00224 1.20934 0.93890 0.98949 1.00919 1.21086 0.99650 0.94876 0.98590 1.21723 0.92163 1.00153 0.98526 1.21518 0.96991 0.99701 1.00964 1.84499 1.20186 1.22805 1.67181 1.21104 0.91348 0.91827 0.98823 0.93057 1.21646 1.00456 0.97975 0.98366 1.21310 1.17043 1.02739 1.14779 0.91313 1.24964 0.96512 0.94797 0.97107 1.69872 1.29120 1.12316 1.41041 0.86441 0.79387 0.79862 0.81993 1.19420 1.20741 1.20761 0.89346 0.90166 0.89264 0.83337 0.75315 0.84708 0.86500 0.86355 0.82488 0.94190 0.88325 0.96092 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.11 36.00 0.36 -0.35 16 2 C 0.00 0.00 6.56 -36.01 -0.24 -0.24 16 3 Cl -0.04 -0.49 25.74 -51.86 -1.33 -1.83 16 4 C -0.21 -2.24 9.68 -37.82 -0.37 -2.61 16 5 C 0.54 8.00 7.59 -12.80 -0.10 7.90 16 6 O -0.51 -8.88 11.12 5.22 0.06 -8.82 16 7 N -0.66 -10.12 5.01 -10.86 -0.05 -10.17 16 8 C 0.14 2.61 6.32 -83.46 -0.53 2.08 16 9 C -0.11 -1.98 8.70 -39.42 -0.34 -2.32 16 10 C -0.13 -2.07 10.04 -39.55 -0.40 -2.47 16 11 C -0.12 -2.16 10.04 -39.57 -0.40 -2.55 16 12 C -0.10 -2.09 8.85 -39.39 -0.35 -2.43 16 13 C -0.08 -1.54 6.11 -38.90 -0.24 -1.78 16 14 S -0.19 -3.96 20.11 -107.50 -2.16 -6.12 16 15 C 0.10 2.27 2.02 -27.88 -0.06 2.21 16 16 H 0.05 1.29 7.34 -51.93 -0.38 0.91 16 17 C -0.12 -2.81 8.90 37.16 0.33 -2.48 16 18 C -0.52 -13.33 6.47 -34.44 -0.22 -13.56 16 19 H 0.07 1.85 7.71 -52.48 -0.40 1.45 16 20 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 21 N -0.89 -23.42 11.38 55.43 0.63 -22.79 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 28 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 30 H 0.41 5.52 7.96 -40.82 -0.32 5.19 16 31 H 0.14 2.32 6.19 -52.49 -0.32 2.00 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.16 3.57 4.82 -52.49 -0.25 3.32 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 2.41 6.23 -51.93 -0.32 2.08 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -28.96 344.24 -9.85 -38.80 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.52 Total: 7.11 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.63 Total: -16.88 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.58 Total: -32.96 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.06 Total: -8.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.16 Total: -6.12 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.33 Total: -1.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.96 -9.85 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900636160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.377 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds