Wall clock time and date at job start Tue Mar 31 2020 14:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 Cl 1.73593 * 119.99724 * 2 1 4 4 C 1.33359 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.46812 * 119.99819 * 351.93526 * 4 2 1 6 6 O 1.21665 * 120.00064 * 2.17791 * 5 4 2 7 7 N 1.34771 * 119.99819 * 182.18170 * 5 4 2 8 8 C 1.40052 * 120.00260 * 184.69399 * 7 5 4 9 9 C 1.38670 * 120.10325 * 326.63569 * 8 7 5 10 10 C 1.38245 * 120.01133 * 180.02562 * 9 8 7 11 11 C 1.38297 * 120.20918 * 0.02562 * 10 9 8 12 12 C 1.38205 * 120.20776 * 359.67730 * 11 10 9 13 13 C 1.38781 * 119.98498 * 0.59943 * 12 11 10 14 14 S 1.76202 * 120.10369 * 179.69728 * 13 12 11 15 15 C 1.81403 * 102.99931 * 354.45803 * 14 13 12 16 16 H 1.08997 * 109.46778 * 51.96291 * 15 14 13 17 17 C 1.52995 * 109.46772 * 171.96486 * 15 14 13 18 18 C 1.50694 * 109.47012 * 291.96212 * 15 14 13 19 19 H 1.08000 * 120.00488 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00014 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00373 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99782 * 359.97438 * 20 18 15 23 23 H 1.48500 * 109.47125 * 90.00242 * 22 20 18 24 24 H 1.48500 * 109.47202 * 210.00373 * 22 20 18 25 25 H 1.48498 * 109.47358 * 330.00333 * 22 20 18 26 26 H 1.09002 * 109.47085 * 264.61889 * 1 2 3 27 27 H 1.08999 * 109.47498 * 24.61962 * 1 2 3 28 28 H 1.09004 * 109.47212 * 144.62483 * 1 2 3 29 29 H 1.07998 * 119.99843 * 171.92879 * 4 2 1 30 30 H 0.97006 * 120.00037 * 4.69243 * 7 5 4 31 31 H 1.08007 * 119.99009 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.89416 * 179.97438 * 10 9 8 33 33 H 1.08010 * 119.89863 * 179.97438 * 11 10 9 34 34 H 1.07998 * 120.01051 * 180.32382 * 12 11 10 35 35 H 1.09001 * 109.46903 * 185.48580 * 17 15 14 36 36 H 1.09004 * 109.47515 * 305.48147 * 17 15 14 37 37 H 1.08999 * 109.47813 * 65.48481 * 17 15 14 38 38 H 0.96993 * 120.00285 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3749 1.5034 0.0000 4 6 2.1739 -1.1549 0.0005 5 6 1.4507 -2.4200 0.1795 6 8 0.2389 -2.4179 0.2876 7 7 2.1293 -3.5835 0.2240 8 6 1.4342 -4.7973 0.2958 9 6 0.2312 -4.8704 0.9816 10 6 -0.4531 -6.0695 1.0517 11 6 0.0584 -7.1994 0.4397 12 6 1.2536 -7.1351 -0.2513 13 6 1.9503 -5.9370 -0.3221 14 16 3.4783 -5.8535 -1.1956 15 6 3.7796 -7.5818 -1.6568 16 1 2.8984 -7.9833 -2.1571 17 6 4.9805 -7.6554 -2.6020 18 6 4.0656 -8.3899 -0.4174 19 1 4.0656 -7.9117 0.5510 20 6 4.3272 -9.7397 -0.5197 21 7 4.5763 -10.4451 0.5620 22 14 4.3265 -10.5670 -2.1945 23 1 5.6923 -10.5111 -2.7748 24 1 3.9092 -11.9844 -2.0463 25 1 3.3775 -9.8630 -3.0939 26 1 -0.3633 -0.0964 1.0232 27 1 -0.3634 0.9342 -0.4281 28 1 -0.3634 -0.8380 -0.5950 29 1 3.2458 -1.1595 -0.1308 30 1 3.0991 -3.5804 0.2064 31 1 -0.1708 -3.9904 1.4619 32 1 -1.3896 -6.1244 1.5867 33 1 -0.4801 -8.1338 0.4980 34 1 1.6475 -8.0181 -0.7325 35 1 5.1020 -8.6791 -2.9560 36 1 4.8146 -6.9942 -3.4525 37 1 5.8805 -7.3454 -2.0709 38 1 4.7600 -11.3948 0.4901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900636162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:21 Heat of formation + Delta-G solvation = 6.949549 kcal Electronic energy + Delta-G solvation = -22246.096806 eV Core-core repulsion = 18820.362184 eV Total energy + Delta-G solvation = -3425.734622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50538 -38.31516 -37.18377 -34.93073 -34.20929 -33.80176 -31.31641 -30.51984 -29.74278 -27.77425 -25.38885 -23.57238 -22.58063 -21.94716 -20.84687 -19.69184 -17.51511 -17.28891 -16.91703 -16.46397 -15.57805 -15.36460 -15.26520 -14.68864 -14.39820 -14.07927 -13.82317 -13.59444 -13.37487 -13.19366 -12.88991 -12.61573 -12.40021 -12.15687 -12.09002 -12.05525 -11.48990 -11.31339 -11.26787 -10.99041 -10.71979 -10.54291 -10.19793 -9.86888 -9.58408 -9.54461 -9.48033 -9.12839 -9.07084 -8.78514 -7.93861 -6.64258 -6.27528 -4.32236 0.76334 1.56783 1.70991 1.86578 2.35724 3.03816 3.10712 3.19056 3.23980 3.24576 3.36137 4.19162 4.20090 4.41406 4.76018 5.01158 5.08321 5.37485 5.43386 5.45592 5.51944 5.66416 5.76960 5.85889 5.93484 6.03434 6.07227 6.15074 6.16252 6.34547 6.52318 6.59408 6.68990 6.83756 6.92972 7.00360 7.29322 7.38939 7.45800 8.07628 8.19071 8.75589 9.27716 10.83109 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.003179 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.162193 B = 8805.029830 C = 9799.785314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.019 3.981 3 Cl -0.068 7.068 4 C -0.213 4.213 5 C 0.552 3.448 6 O -0.523 6.523 7 N -0.652 5.652 8 C 0.143 3.857 9 C -0.113 4.113 10 C -0.121 4.121 11 C -0.118 4.118 12 C -0.091 4.091 13 C -0.079 4.079 14 S -0.158 6.158 15 C 0.052 3.948 16 H 0.050 0.950 17 C -0.139 4.139 18 C -0.523 4.523 19 H 0.086 0.914 20 C 0.082 3.918 21 N -0.885 5.885 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.292 1.292 25 H -0.265 1.265 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.414 0.586 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 16.986 -1.780 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.009 4.009 3 Cl -0.039 7.039 4 C -0.235 4.235 5 C 0.343 3.657 6 O -0.402 6.402 7 N -0.296 5.296 8 C 0.043 3.957 9 C -0.135 4.135 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.115 4.115 13 C -0.194 4.194 14 S 0.088 5.912 15 C -0.077 4.077 16 H 0.068 0.932 17 C -0.198 4.198 18 C -0.561 4.561 19 H 0.104 0.896 20 C -0.123 4.123 21 N -0.521 5.521 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.190 1.190 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.251 0.749 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.363 17.912 -1.970 19.110 hybrid contribution 0.201 -1.677 -0.511 1.764 sum -6.162 16.235 -2.481 17.541 Atomic orbital electron populations 1.21467 0.87496 1.04263 1.04924 1.24121 0.95780 0.86306 0.94721 1.98405 1.76746 1.32785 1.95981 1.22514 1.01499 0.91163 1.08289 1.18059 0.87107 0.83581 0.76999 1.90743 1.13613 1.86762 1.49088 1.43276 1.10703 1.04009 1.71607 1.17149 0.94798 0.84019 0.99761 1.21062 0.94572 0.98711 0.99125 1.20951 0.99999 0.92452 1.00898 1.21077 0.96126 0.98227 0.98389 1.21407 0.94089 0.96864 0.99134 1.21464 0.99588 0.95764 1.02562 1.84352 1.22363 1.18473 1.66021 1.21422 0.97983 0.89321 0.98959 0.93169 1.21979 0.99406 1.00334 0.98047 1.21042 1.50005 0.93107 0.91989 0.89559 1.24958 0.94048 0.96971 0.96356 1.69858 1.46266 1.07930 1.28045 0.86972 0.78840 0.78544 0.84781 1.20158 1.21959 1.19048 0.89239 0.91422 0.86945 0.84083 0.74878 0.84400 0.86265 0.86160 0.83633 0.92702 0.93920 0.91693 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.59 36.01 0.31 -0.86 16 2 C 0.02 0.19 6.56 -36.01 -0.24 -0.05 16 3 Cl -0.07 -0.60 28.99 -51.86 -1.50 -2.10 16 4 C -0.21 -2.23 9.76 -37.82 -0.37 -2.60 16 5 C 0.55 7.39 7.54 -12.80 -0.10 7.30 16 6 O -0.52 -7.82 10.47 5.22 0.05 -7.77 16 7 N -0.65 -9.47 5.04 -10.86 -0.05 -9.53 16 8 C 0.14 2.47 6.34 -83.46 -0.53 1.94 16 9 C -0.11 -1.86 8.71 -39.42 -0.34 -2.21 16 10 C -0.12 -1.90 10.04 -39.56 -0.40 -2.29 16 11 C -0.12 -2.00 10.04 -39.57 -0.40 -2.39 16 12 C -0.09 -1.78 8.80 -39.39 -0.35 -2.13 16 13 C -0.08 -1.51 6.05 -38.90 -0.24 -1.75 16 14 S -0.16 -3.05 20.10 -107.50 -2.16 -5.21 16 15 C 0.05 1.13 1.60 -27.89 -0.04 1.09 16 16 H 0.05 1.12 6.05 -51.93 -0.31 0.80 16 17 C -0.14 -2.80 8.60 37.16 0.32 -2.48 16 18 C -0.52 -13.46 7.49 -34.44 -0.26 -13.72 16 19 H 0.09 2.49 7.96 -52.49 -0.42 2.07 16 20 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 21 N -0.88 -25.35 13.96 55.43 0.77 -24.57 16 22 Si 0.88 20.16 24.32 -169.99 -4.13 16.03 16 23 H -0.27 -6.16 6.92 56.52 0.39 -5.77 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -5.79 6.53 56.52 0.37 -5.42 16 26 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.11 1.25 5.94 -51.93 -0.31 0.94 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.41 5.47 7.90 -40.82 -0.32 5.15 16 31 H 0.14 2.18 6.08 -52.48 -0.32 1.86 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.15 3.10 5.09 -52.49 -0.27 2.84 16 35 H 0.05 1.14 3.43 -51.93 -0.18 0.96 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -28.35 336.46 -8.94 -37.29 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.26 Total: 8.86 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.72 Total: -18.06 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.72 Total: -34.10 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.05 Total: -7.77 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.13 Total: 16.03 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.16 Total: -5.21 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.35 -8.94 -37.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900636162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.236 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds