Wall clock time and date at job start Tue Mar 31 2020 14:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 Cl 1.73593 * 119.99724 * 2 1 4 4 C 1.33359 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.46812 * 119.99819 * 351.93526 * 4 2 1 6 6 O 1.21665 * 120.00064 * 2.17791 * 5 4 2 7 7 N 1.34771 * 119.99819 * 182.18170 * 5 4 2 8 8 C 1.40052 * 120.00260 * 184.69399 * 7 5 4 9 9 C 1.38670 * 120.10325 * 326.63569 * 8 7 5 10 10 C 1.38245 * 120.01133 * 180.02562 * 9 8 7 11 11 C 1.38297 * 120.20918 * 0.02562 * 10 9 8 12 12 C 1.38205 * 120.20776 * 359.67730 * 11 10 9 13 13 C 1.38781 * 119.98498 * 0.59943 * 12 11 10 14 14 S 1.76202 * 120.10369 * 179.69728 * 13 12 11 15 15 C 1.81403 * 102.99931 * 354.45803 * 14 13 12 16 16 H 1.08997 * 109.46778 * 51.96291 * 15 14 13 17 17 C 1.52995 * 109.46772 * 171.96486 * 15 14 13 18 18 C 1.50694 * 109.47012 * 291.96212 * 15 14 13 19 19 H 1.08000 * 120.00488 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00014 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00373 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99782 * 359.97438 * 20 18 15 23 23 H 1.48500 * 109.47125 * 90.00242 * 22 20 18 24 24 H 1.48500 * 109.47202 * 210.00373 * 22 20 18 25 25 H 1.48498 * 109.47358 * 330.00333 * 22 20 18 26 26 H 1.09002 * 109.47085 * 264.61889 * 1 2 3 27 27 H 1.08999 * 109.47498 * 24.61962 * 1 2 3 28 28 H 1.09004 * 109.47212 * 144.62483 * 1 2 3 29 29 H 1.07998 * 119.99843 * 171.92879 * 4 2 1 30 30 H 0.97006 * 120.00037 * 4.69243 * 7 5 4 31 31 H 1.08007 * 119.99009 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.89416 * 179.97438 * 10 9 8 33 33 H 1.08010 * 119.89863 * 179.97438 * 11 10 9 34 34 H 1.07998 * 120.01051 * 180.32382 * 12 11 10 35 35 H 1.09001 * 109.46903 * 185.48580 * 17 15 14 36 36 H 1.09004 * 109.47515 * 305.48147 * 17 15 14 37 37 H 1.08999 * 109.47813 * 65.48481 * 17 15 14 38 38 H 0.96993 * 120.00285 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3749 1.5034 0.0000 4 6 2.1739 -1.1549 0.0005 5 6 1.4507 -2.4200 0.1795 6 8 0.2389 -2.4179 0.2876 7 7 2.1293 -3.5835 0.2240 8 6 1.4342 -4.7973 0.2958 9 6 0.2312 -4.8704 0.9816 10 6 -0.4531 -6.0695 1.0517 11 6 0.0584 -7.1994 0.4397 12 6 1.2536 -7.1351 -0.2513 13 6 1.9503 -5.9370 -0.3221 14 16 3.4783 -5.8535 -1.1956 15 6 3.7796 -7.5818 -1.6568 16 1 2.8984 -7.9833 -2.1571 17 6 4.9805 -7.6554 -2.6020 18 6 4.0656 -8.3899 -0.4174 19 1 4.0656 -7.9117 0.5510 20 6 4.3272 -9.7397 -0.5197 21 7 4.5763 -10.4451 0.5620 22 14 4.3265 -10.5670 -2.1945 23 1 5.6923 -10.5111 -2.7748 24 1 3.9092 -11.9844 -2.0463 25 1 3.3775 -9.8630 -3.0939 26 1 -0.3633 -0.0964 1.0232 27 1 -0.3634 0.9342 -0.4281 28 1 -0.3634 -0.8380 -0.5950 29 1 3.2458 -1.1595 -0.1308 30 1 3.0991 -3.5804 0.2064 31 1 -0.1708 -3.9904 1.4619 32 1 -1.3896 -6.1244 1.5867 33 1 -0.4801 -8.1338 0.4980 34 1 1.6475 -8.0181 -0.7325 35 1 5.1020 -8.6791 -2.9560 36 1 4.8146 -6.9942 -3.4525 37 1 5.8805 -7.3454 -2.0709 38 1 4.7600 -11.3948 0.4901 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900636162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:20 Heat of formation + Delta-G solvation = -8.230385 kcal Electronic energy + Delta-G solvation = -22246.755057 eV Core-core repulsion = 18820.362184 eV Total energy + Delta-G solvation = -3426.392873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64500 -39.55396 -37.99025 -36.33602 -35.82718 -34.68115 -33.24242 -31.90174 -30.93447 -28.69124 -27.25098 -24.76404 -23.91945 -23.52876 -22.19086 -20.73839 -18.95715 -18.73934 -18.30638 -17.75065 -17.22681 -16.50837 -16.34101 -16.02328 -15.66597 -15.44395 -15.14477 -14.90262 -14.65006 -14.46749 -14.25082 -14.07571 -13.85708 -13.64627 -13.05613 -12.96728 -12.84983 -12.81044 -12.58342 -12.39800 -12.08591 -12.00585 -11.60715 -11.48561 -11.36297 -10.83494 -10.80719 -10.69064 -10.48749 -10.29441 -9.25913 -8.35233 -8.10968 -6.41288 -0.14850 0.34091 0.48225 0.79901 0.87846 1.28691 1.34350 1.43132 1.68886 2.01151 2.17577 2.26684 2.84489 3.00031 3.60118 3.83748 4.00942 4.20868 4.30892 4.31587 4.43470 4.46619 4.54585 4.57126 4.60688 4.70507 4.76176 4.86832 4.99026 4.99896 5.24628 5.27879 5.29192 5.35555 5.39133 5.52538 5.63941 6.06486 6.12099 6.33439 6.62864 6.98388 7.21766 8.81369 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.003179 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.162193 B = 8805.029830 C = 9799.785314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.030 3.970 3 Cl -0.053 7.053 4 C -0.221 4.221 5 C 0.552 3.448 6 O -0.539 6.539 7 N -0.653 5.653 8 C 0.143 3.857 9 C -0.119 4.119 10 C -0.109 4.109 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.108 4.108 14 S -0.135 6.135 15 C 0.043 3.957 16 H 0.049 0.951 17 C -0.136 4.136 18 C -0.512 4.512 19 H 0.041 0.959 20 C 0.029 3.971 21 N -0.936 5.936 22 Si 0.937 3.063 23 H -0.262 1.262 24 H -0.298 1.298 25 H -0.246 1.246 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.419 0.581 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 18.899 -2.927 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.001 3.999 3 Cl -0.024 7.024 4 C -0.243 4.243 5 C 0.344 3.656 6 O -0.420 6.420 7 N -0.298 5.298 8 C 0.042 3.958 9 C -0.140 4.140 10 C -0.130 4.130 11 C -0.146 4.146 12 C -0.138 4.138 13 C -0.223 4.223 14 S 0.110 5.890 15 C -0.086 4.086 16 H 0.066 0.934 17 C -0.195 4.195 18 C -0.551 4.551 19 H 0.060 0.940 20 C -0.172 4.172 21 N -0.575 5.575 22 Si 0.764 3.236 23 H -0.187 1.187 24 H -0.225 1.225 25 H -0.170 1.170 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.178 0.822 30 H 0.257 0.743 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.096 19.869 -3.129 21.329 hybrid contribution 0.320 -2.081 -0.027 2.106 sum -6.776 17.788 -3.156 19.295 Atomic orbital electron populations 1.21434 0.87252 1.04573 1.04788 1.24203 0.96055 0.86631 0.92987 1.98416 1.76512 1.31741 1.95763 1.22436 1.02266 0.89884 1.09678 1.18469 0.87024 0.83934 0.76158 1.90734 1.14432 1.87031 1.49766 1.43325 1.10940 1.03594 1.71939 1.17297 0.95111 0.84448 0.98901 1.21309 0.94368 0.99432 0.98926 1.21336 1.00763 0.91381 0.99556 1.21318 0.95462 0.99735 0.98036 1.21338 0.95606 0.96320 1.00546 1.21609 0.99891 0.96613 1.04187 1.84037 1.22948 1.15476 1.66498 1.21325 0.98735 0.90954 0.97574 0.93351 1.21914 0.98102 1.00921 0.98549 1.21051 1.48713 0.93434 0.91868 0.94028 1.25732 0.93832 0.97666 0.99926 1.70007 1.48642 1.08288 1.30576 0.86016 0.79861 0.77074 0.80650 1.18733 1.22536 1.16996 0.89095 0.89494 0.88633 0.82244 0.74321 0.83487 0.82757 0.84285 0.86132 0.93031 0.90806 0.91997 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.59 71.24 0.61 -1.47 16 2 C 0.03 0.52 6.56 24.58 0.16 0.68 16 3 Cl -0.05 -0.81 28.99 -2.72 -0.08 -0.89 16 4 C -0.22 -4.22 9.76 23.41 0.23 -3.99 16 5 C 0.55 14.10 7.54 86.49 0.65 14.75 16 6 O -0.54 -15.48 10.47 -4.24 -0.04 -15.52 16 7 N -0.65 -18.48 5.04 -306.49 -1.54 -20.03 16 8 C 0.14 4.89 6.34 38.24 0.24 5.13 16 9 C -0.12 -3.77 8.71 22.37 0.19 -3.57 16 10 C -0.11 -3.22 10.04 22.29 0.22 -3.00 16 11 C -0.13 -4.19 10.04 22.28 0.22 -3.96 16 12 C -0.11 -4.56 8.80 22.39 0.20 -4.37 16 13 C -0.11 -4.19 6.05 22.71 0.14 -4.05 16 14 S -0.13 -5.18 20.10 -56.49 -1.14 -6.31 16 15 C 0.04 1.88 1.60 29.84 0.05 1.93 16 16 H 0.05 2.15 6.05 -2.39 -0.01 2.13 16 17 C -0.14 -5.26 8.60 71.98 0.62 -4.64 16 18 C -0.51 -27.17 7.49 25.60 0.19 -26.98 16 19 H 0.04 2.53 7.96 -2.91 -0.02 2.51 16 20 C 0.03 1.57 5.45 84.65 0.46 2.03 16 21 N -0.94 -55.63 13.96 21.45 0.30 -55.33 16 22 Si 0.94 41.59 24.32 68.60 1.67 43.26 16 23 H -0.26 -10.99 6.92 99.48 0.69 -10.30 16 24 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.25 -10.05 6.53 99.48 0.65 -9.40 16 26 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16 27 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.10 2.00 5.94 -2.38 -0.01 1.99 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.42 10.78 7.90 -92.70 -0.73 10.05 16 31 H 0.15 4.40 6.08 -2.91 -0.02 4.38 16 32 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.12 5.36 5.09 -2.91 -0.01 5.34 16 35 H 0.05 2.02 3.43 -2.39 -0.01 2.01 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.68 336.46 3.66 -59.02 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.30 Total: 27.33 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.19 Total: -31.51 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.24 Total: -75.36 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.04 Total: -15.52 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.67 Total: 43.26 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.14 Total: -6.31 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.68 3.66 -59.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900636162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.788 kcal (2) G-P(sol) polarization free energy of solvation -62.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds