Wall clock time and date at job start Tue Mar 31 2020 13:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48494 * 109.46920 * 269.99672 * 3 2 1 5 5 H 1.48501 * 109.46974 * 29.99938 * 3 2 1 6 6 H 1.48504 * 109.46926 * 149.99791 * 3 2 1 7 7 C 1.38811 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00129 * 180.02562 * 9 7 2 11 11 F 1.39900 * 109.47378 * 59.99867 * 10 9 7 12 12 F 1.39904 * 109.46781 * 299.99492 * 10 9 7 13 13 C 1.50704 * 109.46991 * 179.97438 * 10 9 7 14 14 C 1.38281 * 120.33965 * 304.99605 * 13 10 9 15 15 N 1.31915 * 121.05084 * 180.02562 * 14 13 10 16 16 C 1.31848 * 121.83050 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 119.71942 * 179.97438 * 16 15 14 18 18 C 1.39478 * 120.56217 * 0.03209 * 16 15 14 19 19 C 1.48342 * 120.54417 * 179.97438 * 18 16 15 20 20 C 1.39779 * 120.90538 * 309.99610 * 19 18 16 21 21 C 1.37976 * 119.01879 * 180.02562 * 20 19 18 22 22 N 1.31931 * 120.88177 * 0.28388 * 21 20 19 23 23 C 1.31926 * 122.00804 * 359.41898 * 22 21 20 24 24 C 1.37976 * 120.87828 * 0.57970 * 23 22 21 25 25 C 1.38438 * 120.34460 * 125.27909 * 13 10 9 26 26 H 0.97003 * 119.99941 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99951 * 359.97438 * 9 7 2 28 28 H 1.08000 * 119.48139 * 359.97438 * 14 13 10 29 29 H 1.07996 * 120.49108 * 359.97438 * 20 19 18 30 30 H 1.08002 * 119.55481 * 179.97438 * 21 20 19 31 31 H 1.07995 * 119.56521 * 180.27294 * 23 22 21 32 32 H 1.08008 * 120.48466 * 179.74292 * 24 23 22 33 33 H 1.08006 * 120.83449 * 0.02562 * 25 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 9 3.7745 -3.2044 -1.1415 12 9 3.7737 -3.2047 1.1432 13 6 5.5937 -2.1956 0.0011 14 6 6.1554 -1.3950 -0.9766 15 7 7.4506 -1.1452 -0.9903 16 6 8.2644 -1.6423 -0.0798 17 17 9.9603 -1.2784 -0.1506 18 6 7.7744 -2.4591 0.9391 19 6 8.6904 -3.0187 1.9630 20 6 9.8663 -3.6769 1.5915 21 6 10.6898 -4.1829 2.5761 22 7 10.3769 -4.0567 3.8515 23 6 9.2800 -3.4381 4.2445 24 6 8.4010 -2.9028 3.3255 25 6 6.4074 -2.7462 0.9764 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3622 0.0007 28 1 5.5238 -0.9681 -1.7416 29 1 10.1259 -3.7884 0.5491 30 1 11.6003 -4.6933 2.2988 31 1 9.0646 -3.3538 5.2994 32 1 7.5027 -2.4012 3.6543 33 1 5.9955 -3.3790 1.7486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:31 Heat of formation + Delta-G solvation = -27.461357 kcal Electronic energy + Delta-G solvation = -24295.709613 eV Core-core repulsion = 20211.102093 eV Total energy + Delta-G solvation = -4084.607520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.83555 -47.95242 -41.93797 -40.72702 -38.01009 -36.67948 -35.42311 -34.29844 -32.96980 -32.21921 -31.29217 -27.69966 -26.05970 -25.11805 -24.24997 -23.81060 -22.51216 -20.43530 -19.00262 -18.87025 -18.48877 -18.22342 -17.64848 -17.40064 -16.97677 -16.66095 -16.29100 -15.76776 -15.14141 -14.91658 -14.84337 -14.79278 -14.68704 -14.59985 -14.50218 -14.34568 -14.24949 -13.82135 -13.06779 -13.05740 -12.81792 -12.61803 -12.46048 -12.30553 -11.95134 -11.63826 -11.60841 -11.16073 -10.89765 -10.49757 -10.13434 -10.06599 -10.01662 -8.19266 -5.71933 -0.83789 -0.44314 0.16795 0.27590 0.43971 1.32859 1.37904 1.43192 2.06460 2.14340 2.34879 2.79680 2.87869 2.95020 3.09731 3.16936 3.40100 3.46249 3.56460 3.65863 3.86453 3.91976 4.02428 4.15088 4.29534 4.38694 4.60621 4.69619 4.79311 4.85904 5.02725 5.18378 5.42709 5.67916 5.95934 6.21037 6.69818 6.97946 7.33319 7.54965 8.99816 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.003789 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.947156 B = 7387.078057 C = 7892.635426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.031 4.031 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.276 4.276 8 H 0.059 0.941 9 N -0.742 5.742 10 C 0.565 3.435 11 F -0.208 7.208 12 F -0.207 7.207 13 C -0.191 4.191 14 C 0.162 3.838 15 N -0.480 5.480 16 C 0.196 3.804 17 Cl 0.001 6.999 18 C -0.083 4.083 19 C -0.016 4.016 20 C -0.148 4.148 21 C 0.099 3.901 22 N -0.502 5.502 23 C 0.099 3.901 24 C -0.154 4.154 25 C -0.003 4.003 26 H 0.267 0.733 27 H 0.389 0.611 28 H 0.184 0.816 29 H 0.147 0.853 30 H 0.184 0.816 31 H 0.182 0.818 32 H 0.150 0.850 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.980 -5.007 4.110 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.225 4.225 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.405 4.405 8 H 0.077 0.923 9 N -0.394 5.394 10 C 0.438 3.562 11 F -0.190 7.190 12 F -0.189 7.189 13 C -0.196 4.196 14 C 0.005 3.995 15 N -0.190 5.190 16 C 0.031 3.969 17 Cl 0.030 6.970 18 C -0.086 4.086 19 C -0.025 4.025 20 C -0.168 4.168 21 C -0.058 4.058 22 N -0.211 5.211 23 C -0.058 4.058 24 C -0.174 4.174 25 C -0.029 4.029 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.200 0.800 29 H 0.164 0.836 30 H 0.201 0.799 31 H 0.199 0.801 32 H 0.168 0.832 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 24.771 -4.902 4.068 25.577 hybrid contribution -1.296 0.725 -0.259 1.507 sum 23.476 -4.176 3.809 24.147 Atomic orbital electron populations 1.69864 1.07280 1.27716 1.56028 1.25514 0.96068 1.01347 0.99619 0.85534 0.78843 0.79083 0.79136 1.18937 1.21160 1.17363 1.18772 0.81049 0.94398 1.46292 0.92313 1.43622 1.04254 1.02602 1.88882 1.17507 0.86837 0.78837 0.73036 1.93061 1.93935 1.79430 1.52580 1.93006 1.93842 1.79481 1.52550 1.20990 0.93545 1.04262 1.00759 1.22751 0.89625 0.91423 0.95665 1.67257 1.04135 1.22767 1.24831 1.22134 0.89211 0.93994 0.91576 1.98420 1.07666 1.93301 1.97613 1.19270 0.93225 0.99823 0.96257 1.18831 0.94054 0.97184 0.92464 1.22402 0.93895 0.98076 1.02408 1.23113 0.99539 0.95873 0.87229 1.67715 1.18730 1.14909 1.19770 1.23109 0.88938 0.92319 1.01401 1.22447 1.02046 1.00931 0.91983 1.21718 0.90845 0.94354 0.96028 0.92346 0.77321 0.79959 0.83562 0.79921 0.80067 0.83190 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.90 13.97 21.65 0.30 -58.60 16 2 C -0.03 -1.74 5.50 84.86 0.47 -1.27 16 3 Si 0.95 41.66 27.74 68.60 1.90 43.56 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -9.74 6.52 99.48 0.65 -9.09 16 7 C -0.28 -15.29 10.16 84.03 0.85 -14.43 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 N -0.74 -33.17 5.17 -342.59 -1.77 -34.94 16 10 C 0.56 21.80 2.39 85.63 0.20 22.01 16 11 F -0.21 -8.60 17.05 44.97 0.77 -7.83 16 12 F -0.21 -8.24 15.82 44.97 0.71 -7.53 16 13 C -0.19 -5.69 5.18 -19.81 -0.10 -5.80 16 14 C 0.16 4.55 10.31 84.69 0.87 5.42 16 15 N -0.48 -12.85 10.33 -185.82 -1.92 -14.77 16 16 C 0.20 4.62 7.26 84.99 0.62 5.24 16 17 Cl 0.00 0.02 26.23 -2.72 -0.07 -0.05 16 18 C -0.08 -1.81 5.53 -19.93 -0.11 -1.92 16 19 C -0.02 -0.30 5.14 -19.84 -0.10 -0.41 16 20 C -0.15 -2.35 8.32 22.58 0.19 -2.16 16 21 C 0.10 1.48 11.17 84.62 0.95 2.42 16 22 N -0.50 -9.06 10.35 -196.12 -2.03 -11.09 16 23 C 0.10 1.54 11.17 84.62 0.95 2.49 16 24 C -0.15 -2.55 9.67 22.58 0.22 -2.33 16 25 C 0.00 -0.08 9.08 22.68 0.21 0.12 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.39 15.89 5.17 -92.71 -0.48 15.41 16 28 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 29 H 0.15 1.98 7.24 -2.91 -0.02 1.96 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.17 3.74 7.27 -2.91 -0.02 3.72 16 Total: -1.00 -67.30 316.55 3.75 -63.55 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.65 Total: 18.30 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.20 Total: 9.39 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.42 Total: -119.39 kcal Atomic # 9 Polarization: -16.84 SS G_CDS: 1.48 Total: -15.36 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.90 Total: 43.56 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Total: -67.30 3.75 -63.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.087 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds