Wall clock time and date at job start Tue Mar 31 2020 15:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46896 * 299.99747 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99904 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 C 1.52996 * 109.47159 * 179.72352 * 13 11 10 15 15 H 1.09003 * 109.53782 * 54.99677 * 14 13 11 16 16 C 1.53819 * 109.53901 * 175.16299 * 14 13 11 17 17 S 1.82106 * 106.86082 * 185.63561 * 16 14 13 18 18 O 1.42096 * 110.76584 * 68.44012 * 17 16 14 19 19 O 1.42105 * 110.76239 * 205.96089 * 17 16 14 20 20 C 1.76698 * 102.90414 * 317.19960 * 17 16 14 21 21 C 1.38252 * 119.07947 * 193.13619 * 20 17 16 22 22 C 1.38161 * 120.28429 * 180.44527 * 21 20 17 23 23 C 1.38289 * 119.68492 * 0.11945 * 22 21 20 24 24 C 1.37797 * 120.16481 * 359.71711 * 23 22 21 25 25 C 1.38426 * 120.42672 * 13.20176 * 20 17 16 26 26 O 1.35156 * 123.59897 * 358.15098 * 25 20 17 27 27 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 29 29 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 30 30 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 32 32 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 33 33 H 1.08996 * 109.97250 * 304.96880 * 16 14 13 34 34 H 1.08993 * 109.97773 * 66.20529 * 16 14 13 35 35 H 1.07995 * 119.85524 * 0.47097 * 21 20 17 36 36 H 1.08003 * 120.15566 * 180.09401 * 22 21 20 37 37 H 1.08000 * 119.92035 * 179.73424 * 23 22 21 38 38 H 1.08002 * 119.73607 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 6 1.9680 -7.3538 0.0112 15 1 1.2764 -7.3786 -0.8309 16 6 2.9618 -8.5221 -0.1046 17 16 1.9730 -10.0431 -0.2626 18 8 1.2933 -10.0748 -1.5101 19 8 2.7008 -11.1685 0.2097 20 6 0.6938 -9.8082 0.9336 21 6 -0.0969 -10.8842 1.2919 22 6 -1.1101 -10.7265 2.2179 23 6 -1.3327 -9.4849 2.7847 24 6 -0.5440 -8.4113 2.4321 25 6 0.4861 -8.5635 1.5026 26 8 1.2426 -7.4785 1.2248 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 3.1566 -3.4354 0.0002 31 1 3.3607 -5.9751 -0.8833 32 1 3.3586 -5.9671 0.8967 33 1 3.5882 -8.3919 -0.9871 34 1 3.5838 -8.5719 0.7891 35 1 0.0785 -11.8522 0.8463 36 1 -1.7255 -11.5688 2.4974 37 1 -2.1264 -9.3563 3.5057 38 1 -0.7242 -7.4446 2.8787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156060247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:57 Heat of formation + Delta-G solvation = -141.712701 kcal Electronic energy + Delta-G solvation = -25015.398719 eV Core-core repulsion = 21142.508454 eV Total energy + Delta-G solvation = -3872.890265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66242 -40.40351 -38.92589 -38.24238 -37.18233 -36.12996 -34.61814 -34.27252 -32.35144 -31.06832 -30.43011 -28.61819 -25.33385 -24.61229 -23.88967 -22.71382 -21.35508 -20.24695 -19.74917 -19.04339 -18.42376 -17.94861 -17.51434 -17.03599 -16.94368 -16.73527 -16.37126 -16.19644 -16.03822 -15.72600 -15.29485 -15.01291 -14.54596 -14.24321 -14.10786 -13.99465 -13.64302 -13.52545 -13.37202 -13.25107 -13.21233 -12.91564 -12.86120 -12.71724 -12.65213 -12.21251 -12.18353 -11.80674 -11.56203 -11.44356 -10.81090 -10.73819 -10.48407 -9.79883 -9.49398 -8.28799 -6.45032 -1.11277 -0.23379 0.21349 1.44023 1.44737 1.55678 1.58213 1.70697 1.83676 2.29836 2.41309 2.42061 2.56245 2.91932 3.06650 3.32259 3.54391 3.57987 3.72358 3.97311 3.99730 4.18150 4.22139 4.27670 4.32781 4.52646 4.58692 4.73071 4.75835 4.87466 5.11078 5.14481 5.26112 5.32643 5.50586 5.63191 5.71489 5.86423 6.28871 6.67261 6.93285 7.24903 7.54232 8.83586 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002803 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.280520 B = 9987.813465 C =10855.591825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.707 5.707 11 C 0.489 3.511 12 O -0.597 6.597 13 C -0.117 4.117 14 C 0.111 3.889 15 H 0.084 0.916 16 C -0.614 4.614 17 S 2.504 3.496 18 O -0.963 6.963 19 O -0.951 6.951 20 C -0.736 4.736 21 C -0.014 4.014 22 C -0.165 4.165 23 C -0.034 4.034 24 C -0.186 4.186 25 C 0.204 3.796 26 O -0.316 6.316 27 H 0.268 0.732 28 H -0.014 1.014 29 H -0.016 1.016 30 H 0.411 0.589 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.205 0.795 34 H 0.186 0.814 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -21.048 3.528 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.358 5.358 11 C 0.277 3.723 12 O -0.479 6.479 13 C -0.156 4.156 14 C 0.054 3.946 15 H 0.102 0.898 16 C -0.746 4.746 17 S 2.687 3.313 18 O -0.960 6.960 19 O -0.949 6.949 20 C -0.823 4.823 21 C -0.033 4.033 22 C -0.184 4.184 23 C -0.052 4.052 24 C -0.205 4.205 25 C 0.156 3.844 26 O -0.229 6.229 27 H 0.077 0.923 28 H 0.004 0.996 29 H 0.002 0.998 30 H 0.247 0.753 31 H 0.185 0.815 32 H 0.160 0.840 33 H 0.222 0.778 34 H 0.204 0.796 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.203 -21.668 3.085 23.042 hybrid contribution -0.236 1.671 0.404 1.735 sum 6.967 -19.997 3.489 21.462 Atomic orbital electron populations 1.70150 1.08329 1.28427 1.50211 1.26076 0.95744 1.03969 0.93988 0.85123 0.79222 0.77395 0.77538 1.17387 1.20640 1.20669 1.21671 0.94395 0.90527 1.52476 0.89558 1.18509 0.88784 0.84524 0.93936 1.46154 1.11251 1.05439 1.72909 1.21411 0.89951 0.85148 0.75825 1.90690 1.19590 1.85460 1.52118 1.21887 0.97021 0.86744 1.09985 1.22128 0.91490 0.95218 0.85776 0.89829 1.31008 1.12421 1.13262 1.17912 1.05114 0.75255 0.77341 0.73568 1.93593 1.73371 1.87150 1.41900 1.93571 1.72437 1.47573 1.81273 1.30262 1.25527 0.99918 1.26547 1.20918 0.91846 0.96601 0.93940 1.21590 0.99429 0.98994 0.98369 1.21603 0.96338 0.91276 0.95978 1.21206 0.95778 1.01547 1.01957 1.18548 0.88991 0.83876 0.92939 1.85405 1.58960 1.39189 1.39351 0.92350 0.99589 0.99762 0.75260 0.81479 0.84021 0.77773 0.79600 0.83336 0.81439 0.81550 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -29.15 9.28 25.60 0.24 -28.92 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.14 5.43 85.63 0.46 14.61 16 10 N -0.71 -27.39 5.55 -466.79 -2.59 -29.98 16 11 C 0.49 17.56 7.71 87.66 0.68 18.23 16 12 O -0.60 -28.12 15.43 10.72 0.17 -27.96 16 13 C -0.12 -2.26 5.42 29.85 0.16 -2.10 16 14 C 0.11 2.42 2.21 30.87 0.07 2.48 16 15 H 0.08 2.13 7.94 -2.39 -0.02 2.11 16 16 C -0.61 -7.33 6.14 72.26 0.44 -6.88 16 17 S 2.50 51.56 5.40 -56.49 -0.30 51.25 16 18 O -0.96 -26.54 17.96 -127.69 -2.29 -28.84 16 19 O -0.95 -22.88 17.84 -127.69 -2.28 -25.16 16 20 C -0.74 -17.94 5.71 22.32 0.13 -17.81 16 21 C -0.01 -0.31 9.56 22.25 0.21 -0.09 16 22 C -0.17 -2.93 10.06 22.26 0.22 -2.71 16 23 C -0.03 -0.65 10.02 22.18 0.22 -0.43 16 24 C -0.19 -4.78 9.90 22.49 0.22 -4.56 16 25 C 0.20 5.55 6.52 22.64 0.15 5.70 16 26 O -0.32 -8.79 8.70 -70.56 -0.61 -9.40 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.41 12.39 8.32 -92.71 -0.77 11.61 16 31 H 0.17 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.21 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.19 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -88.20 341.70 -1.61 -89.80 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.33 Total: 14.20 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.67 Total: -21.93 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.30 Total: -85.44 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -5.02 Total: -91.36 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.30 Total: 51.25 kcal Total: -88.20 -1.61 -89.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.911 kcal (2) G-P(sol) polarization free energy of solvation -88.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds