Wall clock time and date at job start Tue Mar 31 2020 15:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48500 * 109.46927 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47167 * 150.00021 * 3 2 1 7 7 C 1.37872 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 H 1.08996 * 109.53612 * 305.00143 * 14 13 11 16 16 C 1.53821 * 109.53911 * 184.83498 * 14 13 11 17 17 S 1.82103 * 106.86131 * 174.36258 * 16 14 13 18 18 O 1.42098 * 110.76430 * 154.03924 * 17 16 14 19 19 O 1.42100 * 110.76414 * 291.55918 * 17 16 14 20 20 C 1.76703 * 102.90335 * 42.79967 * 17 16 14 21 21 C 1.38247 * 119.07841 * 166.86512 * 20 17 16 22 22 C 1.38166 * 120.28597 * 179.55153 * 21 20 17 23 23 C 1.38293 * 119.68000 * 359.88578 * 22 21 20 24 24 C 1.37796 * 120.16618 * 0.27820 * 23 22 21 25 25 C 1.38426 * 120.42480 * 346.80268 * 20 17 16 26 26 O 1.35155 * 123.60005 * 1.84233 * 25 20 17 27 27 H 0.97004 * 120.00400 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 29 29 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 30 30 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 31 31 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 32 32 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 33 33 H 1.09002 * 109.97836 * 293.70155 * 16 14 13 34 34 H 1.09004 * 109.97378 * 55.03127 * 16 14 13 35 35 H 1.07999 * 119.85431 * 359.57584 * 21 20 17 36 36 H 1.07996 * 120.15825 * 179.89844 * 22 21 20 37 37 H 1.07997 * 119.91428 * 180.25853 * 23 22 21 38 38 H 1.08003 * 119.73632 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 5.3249 -2.8214 -0.0001 12 8 6.1131 -1.8996 0.0004 13 6 5.8273 -4.2422 0.0060 14 6 7.3573 -4.2422 0.0116 15 1 7.7249 -3.6555 -0.8302 16 6 7.8722 -5.6870 -0.1043 17 16 9.6839 -5.5911 -0.2616 18 8 10.2944 -6.7842 0.2107 19 8 10.0517 -5.0181 -1.5089 20 6 10.1196 -4.3661 0.9350 21 6 11.4466 -4.2194 1.2938 22 6 11.8163 -3.2632 2.2201 23 6 10.8520 -2.4498 2.7867 24 6 9.5281 -2.5959 2.4336 25 6 9.1452 -3.5641 1.5038 26 8 7.8274 -3.6767 1.2255 27 1 -0.4851 0.8400 0.0004 28 1 3.8745 -0.6807 0.8904 29 1 3.8751 -0.6796 -0.8895 30 1 3.3696 -3.3126 -0.0009 31 1 5.4607 -4.7534 0.8963 32 1 5.4673 -4.7588 -0.8837 33 1 7.6054 -6.2504 0.7899 34 1 7.4467 -6.1643 -0.9871 35 1 12.1975 -4.8547 0.8479 36 1 12.8533 -3.1515 2.5001 37 1 11.1373 -1.6984 3.5080 38 1 8.7809 -1.9567 2.8801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156060248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:01 Heat of formation + Delta-G solvation = -108.265935 kcal Electronic energy + Delta-G solvation = -25089.966238 eV Core-core repulsion = 21218.526334 eV Total energy + Delta-G solvation = -3871.439905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79754 -39.18394 -38.02852 -37.36754 -36.30314 -34.43522 -33.71086 -32.41495 -31.57506 -30.28999 -29.42840 -27.46213 -24.33346 -23.33596 -22.43253 -21.57074 -20.04485 -19.45458 -18.85702 -17.78025 -17.55750 -16.87085 -16.43858 -16.07936 -15.76153 -15.46539 -15.42823 -15.07509 -14.97358 -14.43242 -14.20212 -14.05100 -13.47440 -13.16519 -12.89424 -12.78350 -12.73409 -12.46438 -12.38945 -12.37067 -12.34181 -11.88029 -11.80568 -11.36941 -11.13056 -10.96152 -10.81532 -10.77331 -10.02514 -9.69393 -9.56067 -9.35635 -8.83673 -8.67507 -8.25096 -6.26765 -4.29588 -0.36331 0.55874 1.02610 2.34428 2.50109 3.09341 3.16987 3.19771 3.22996 3.29845 3.37650 3.47824 3.87884 4.05785 4.26684 4.28765 4.39461 4.49661 4.64930 4.73437 4.88467 4.99270 5.05501 5.08352 5.08703 5.28216 5.37814 5.48342 5.53596 5.68780 5.83182 6.09316 6.34614 6.73000 7.00305 7.11220 7.12069 7.31904 8.04135 8.41839 8.67472 8.81303 9.33019 10.85109 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.003057 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.242604 B = 9157.584604 C =10090.044038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.704 5.704 11 C 0.499 3.501 12 O -0.547 6.547 13 C -0.132 4.132 14 C 0.126 3.874 15 H 0.104 0.896 16 C -0.645 4.645 17 S 2.496 3.504 18 O -0.930 6.930 19 O -0.925 6.925 20 C -0.721 4.721 21 C 0.006 3.994 22 C -0.169 4.169 23 C -0.037 4.037 24 C -0.158 4.158 25 C 0.226 3.774 26 O -0.295 6.295 27 H 0.268 0.732 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.397 0.603 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.037 -12.301 3.275 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.353 5.353 11 C 0.283 3.717 12 O -0.426 6.426 13 C -0.172 4.172 14 C 0.069 3.931 15 H 0.122 0.878 16 C -0.774 4.774 17 S 2.676 3.324 18 O -0.927 6.927 19 O -0.922 6.922 20 C -0.809 4.809 21 C -0.013 4.013 22 C -0.188 4.188 23 C -0.055 4.055 24 C -0.177 4.177 25 C 0.178 3.822 26 O -0.208 6.208 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 20.808 -11.901 2.834 24.138 hybrid contribution -0.470 0.854 0.439 1.069 sum 20.339 -11.047 3.273 23.376 Atomic orbital electron populations 1.69875 1.06230 1.27504 1.49271 1.24795 0.94790 0.99205 0.93812 0.86817 0.80555 0.83226 0.79087 1.19816 1.20863 1.18517 1.21080 0.88482 0.95234 1.53527 0.90240 1.19508 0.95273 0.78522 0.96870 1.46162 1.05502 1.11230 1.72365 1.20214 0.83448 0.90244 0.77786 1.90697 1.55365 1.46012 1.50500 1.21773 0.91430 0.97695 1.06327 1.21961 0.96291 0.88079 0.86780 0.87849 1.31155 1.25869 1.06217 1.14176 1.05503 0.77356 0.74773 0.74802 1.93604 1.72741 1.45081 1.81241 1.93641 1.80278 1.77953 1.40315 1.30063 1.01937 1.22625 1.26272 1.20474 0.92510 0.94964 0.93313 1.21154 1.00135 0.97950 0.99552 1.21215 0.91919 0.96425 0.95988 1.20965 0.97120 0.98550 1.01085 1.18345 0.81240 0.90527 0.92076 1.85427 1.19632 1.77237 1.38485 0.92201 0.95623 0.96079 0.76907 0.87195 0.86168 0.82726 0.82213 0.84825 0.84794 0.84548 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.55 -14.50 9.83 -34.44 -0.34 -14.84 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 C 0.22 5.20 4.50 -5.19 -0.02 5.18 16 10 N -0.70 -13.10 5.55 -61.47 -0.34 -13.44 16 11 C 0.50 8.49 7.71 -10.98 -0.08 8.41 16 12 O -0.55 -11.51 15.43 -8.84 -0.14 -11.64 16 13 C -0.13 -1.40 5.42 -27.88 -0.15 -1.55 16 14 C 0.13 1.40 2.22 -26.30 -0.06 1.34 16 15 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 16 C -0.64 -4.69 6.14 37.59 0.23 -4.46 16 17 S 2.50 25.78 5.40 -107.50 -0.58 25.20 16 18 O -0.93 -11.38 17.84 -57.50 -1.03 -12.41 16 19 O -0.92 -12.28 17.96 -57.50 -1.03 -13.31 16 20 C -0.72 -8.41 5.71 -39.51 -0.23 -8.64 16 21 C 0.01 0.07 9.56 -39.60 -0.38 -0.31 16 22 C -0.17 -1.53 10.07 -39.59 -0.40 -1.93 16 23 C -0.04 -0.35 10.02 -39.72 -0.40 -0.75 16 24 C -0.16 -1.85 9.90 -39.24 -0.39 -2.24 16 25 C 0.23 2.86 6.52 -39.01 -0.25 2.61 16 26 O -0.30 -3.89 8.70 -31.55 -0.27 -4.17 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 29 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 30 H 0.40 6.30 8.32 -40.82 -0.34 5.96 16 31 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.16 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -37.38 338.10 -9.24 -46.61 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.48 Total: 2.05 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.57 Total: -15.13 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.43 Total: -38.67 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.47 Total: -41.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 25.78 SS G_CDS: -0.58 Total: 25.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.38 -9.24 -46.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.654 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds