Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00265 * 64.56498 * 3 2 1 5 5 N 3.51036 * 140.68755 * 64.56250 * 2 1 3 6 6 C 1.41154 * 119.99743 * 244.56491 * 3 2 1 7 7 C 1.38984 * 120.00387 * 5.26283 * 6 3 2 8 8 H 1.07995 * 119.99991 * 341.36362 * 7 6 3 9 9 C 1.40838 * 120.00178 * 161.35444 * 7 6 3 10 10 N 1.30341 * 120.00092 * 350.61951 * 9 7 6 11 11 Si 1.86804 * 120.00135 * 170.61583 * 9 7 6 12 12 H 1.48502 * 109.46923 * 60.00322 * 11 9 7 13 13 H 1.48494 * 109.46937 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46976 * 300.00496 * 11 9 7 15 15 N 1.38341 * 119.99897 * 185.26770 * 6 3 2 16 16 C 1.39386 * 120.00418 * 118.81813 * 15 6 3 17 17 C 1.39094 * 120.01681 * 353.32477 * 16 15 6 18 18 N 1.32072 * 119.97348 * 179.75490 * 17 16 15 19 19 C 1.32588 * 120.02145 * 0.49457 * 18 17 16 20 20 O 1.35769 * 119.98040 * 179.73734 * 19 18 17 21 21 C 1.42899 * 117.00238 * 0.02562 * 20 19 18 22 22 F 1.39905 * 109.46700 * 60.00451 * 21 20 19 23 23 F 1.39897 * 109.47258 * 180.02562 * 21 20 19 24 24 F 1.39894 * 109.47501 * 300.00309 * 21 20 19 25 25 C 1.38858 * 120.03621 * 359.75671 * 19 18 17 26 26 N 1.32126 * 120.02488 * 359.97438 * 25 19 18 27 27 H 0.97000 * 119.99547 * 185.04766 * 10 9 7 28 28 H 0.97005 * 119.99954 * 298.53910 * 15 6 3 29 29 H 1.07999 * 120.01050 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.98705 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.5316 -1.1199 5 7 3.8520 -0.9553 -2.0084 6 6 3.2735 0.5260 1.1040 7 6 2.5828 0.9418 2.2361 8 1 1.5248 1.1503 2.1769 9 6 3.2626 1.0912 3.4605 10 7 4.4896 0.6685 3.5804 11 14 2.4056 1.8954 4.9126 12 1 1.1944 1.1129 5.2678 13 1 3.3299 1.9325 6.0742 14 1 2.0114 3.2803 4.5497 15 7 4.6525 0.6270 1.0590 16 6 5.2637 1.8753 1.1643 17 6 4.4892 3.0306 1.1748 18 7 5.0689 4.2127 1.2794 19 6 6.3892 4.2988 1.3646 20 8 6.9846 5.5147 1.4668 21 6 6.1275 6.6580 1.4770 22 9 5.2527 6.5752 2.5657 23 9 6.9001 7.8192 1.5864 24 9 5.3905 6.6991 0.2886 25 6 7.1634 3.1462 1.3490 26 7 6.5848 1.9625 1.2497 27 1 4.9328 0.7043 4.4426 28 1 5.1943 -0.1713 0.9583 29 1 3.4140 2.9609 1.1009 30 1 8.2388 3.2173 1.4181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = -80.812793 kcal Electronic energy + Delta-G solvation = -26746.084043 eV Core-core repulsion = 22127.286312 eV Total energy + Delta-G solvation = -4618.797731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.13237 -47.94539 -47.72239 -41.11203 -38.78852 -37.42704 -35.43820 -34.86723 -34.13677 -33.53604 -31.17652 -28.90402 -27.40546 -25.97461 -24.47771 -23.35792 -21.65534 -19.94659 -19.42814 -19.10034 -18.93073 -17.70829 -17.53784 -16.59539 -16.46414 -16.33793 -15.52873 -15.24167 -14.69740 -14.54940 -14.45352 -14.20984 -14.04684 -13.94837 -13.91287 -13.64403 -13.32732 -13.07365 -12.92855 -12.74305 -12.46230 -11.91915 -11.86228 -11.75870 -11.68524 -11.41142 -11.25848 -11.08949 -11.05985 -10.82277 -10.28632 -10.06501 -9.15358 -8.46904 -7.97786 -7.16072 -5.66750 1.10139 1.36021 1.58616 1.99654 2.58917 2.64497 2.74155 3.01800 3.25805 3.41373 3.72314 3.92084 3.93121 3.95719 3.99520 4.17747 4.25873 4.26600 4.61230 4.79001 4.99853 5.32404 5.42621 5.64914 5.89272 5.99990 6.16386 6.62207 6.81421 6.92657 7.31301 7.38239 7.53423 7.78612 7.92178 8.34836 8.81166 8.95701 8.99132 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.004799 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.492903 B = 5833.281859 C = 6655.724206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.323 3.677 3 C -0.302 4.302 4 C 0.306 3.694 5 N -0.526 5.526 6 C 0.369 3.631 7 C -0.372 4.372 8 H 0.118 0.882 9 C 0.066 3.934 10 N -0.715 5.715 11 Si 0.922 3.078 12 H -0.249 1.249 13 H -0.268 1.268 14 H -0.246 1.246 15 N -0.622 5.622 16 C 0.390 3.610 17 C 0.050 3.950 18 N -0.446 5.446 19 C 0.158 3.842 20 O -0.306 6.306 21 C 0.611 3.389 22 F -0.162 7.162 23 F -0.144 7.144 24 F -0.161 7.161 25 C 0.122 3.878 26 N -0.468 5.468 27 H 0.306 0.694 28 H 0.412 0.588 29 H 0.184 0.816 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 9.365 5.946 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.015 3.985 3 C -0.321 4.321 4 C -0.001 4.001 5 N -0.208 5.208 6 C 0.265 3.735 7 C -0.400 4.400 8 H 0.136 0.864 9 C -0.166 4.166 10 N -0.333 5.333 11 Si 0.743 3.257 12 H -0.173 1.173 13 H -0.192 1.192 14 H -0.170 1.170 15 N -0.246 5.246 16 C 0.150 3.850 17 C -0.120 4.120 18 N -0.170 5.170 19 C -0.021 4.021 20 O -0.221 6.221 21 C 0.520 3.480 22 F -0.144 7.144 23 F -0.126 7.126 24 F -0.143 7.143 25 C -0.040 4.040 26 N -0.191 5.191 27 H 0.118 0.882 28 H 0.251 0.749 29 H 0.201 0.799 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.617 8.841 4.724 12.011 hybrid contribution 0.076 0.380 1.156 1.219 sum 6.693 9.222 5.880 12.822 Atomic orbital electron populations 1.81095 1.12121 1.17097 1.10340 1.24611 0.91207 0.90827 0.91899 1.12811 0.83084 1.38599 0.97558 1.25157 0.92585 0.90852 0.91555 1.81111 1.09636 1.17769 1.12250 1.16730 0.79230 0.87905 0.89611 1.20424 0.98504 1.30174 0.90880 0.86410 1.26576 0.94599 0.93132 1.02309 1.69503 1.10457 1.24536 1.28811 0.85989 0.80554 0.81406 0.77779 1.17301 1.19179 1.16962 1.41113 1.04885 1.04932 1.73657 1.18900 0.88541 0.87431 0.90105 1.23116 1.02085 0.84838 1.01923 1.67826 1.08626 1.28969 1.11560 1.20022 0.90378 0.83798 1.07931 1.86518 1.34289 1.11840 1.89410 1.19225 0.75092 0.78519 0.75168 1.93299 1.69946 1.95864 1.55268 1.93262 1.76299 1.46959 1.96035 1.93298 1.77532 1.96104 1.47377 1.22405 1.00755 0.83783 0.97093 1.68067 1.09749 1.24339 1.16923 0.88170 0.74949 0.79875 0.80828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.60 18.54 41.84 0.78 -10.82 16 2 C 0.32 6.77 13.88 -22.47 -0.31 6.46 16 3 C -0.30 -5.99 5.88 -104.94 -0.62 -6.61 16 4 C 0.31 6.43 14.82 -22.46 -0.33 6.09 16 5 N -0.53 -11.70 18.54 41.85 0.78 -10.92 16 6 C 0.37 6.80 4.95 -83.54 -0.41 6.38 16 7 C -0.37 -6.71 7.04 -38.32 -0.27 -6.98 16 8 H 0.12 2.14 6.96 -52.49 -0.37 1.77 16 9 C 0.07 1.13 4.77 -17.20 -0.08 1.04 16 10 N -0.72 -12.39 10.83 55.60 0.60 -11.79 16 11 Si 0.92 13.83 29.58 -169.99 -5.03 8.80 16 12 H -0.25 -3.79 7.11 56.52 0.40 -3.39 16 13 H -0.27 -3.98 7.11 56.52 0.40 -3.58 16 14 H -0.25 -3.81 7.11 56.52 0.40 -3.41 16 15 N -0.62 -10.94 3.32 -9.63 -0.03 -10.97 16 16 C 0.39 6.74 6.03 -154.42 -0.93 5.81 16 17 C 0.05 0.86 9.74 -17.13 -0.17 0.70 16 18 N -0.45 -7.58 8.26 -12.96 -0.11 -7.69 16 19 C 0.16 2.46 7.18 -17.00 -0.12 2.34 16 20 O -0.31 -4.34 10.37 -19.02 -0.20 -4.54 16 21 C 0.61 8.39 3.51 101.05 0.35 8.75 16 22 F -0.16 -2.37 16.56 2.25 0.04 -2.33 16 23 F -0.14 -1.74 17.53 2.25 0.04 -1.70 16 24 F -0.16 -2.35 16.56 2.25 0.04 -2.31 16 25 C 0.12 1.75 11.16 -17.20 -0.19 1.56 16 26 N -0.47 -7.68 10.52 -12.05 -0.13 -7.80 16 27 H 0.31 4.96 8.29 -40.82 -0.34 4.62 16 28 H 0.41 7.18 8.94 -40.82 -0.36 6.82 16 29 H 0.18 3.13 6.24 -52.49 -0.33 2.80 16 30 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -22.54 309.39 -2.26 -24.80 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -0.61 Total: 7.07 kcal Atomic # 6 Polarization: 28.63 SS G_CDS: -3.09 Total: 25.55 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 1.89 Total: -59.99 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.34 kcal Atomic # 14 Polarization: 13.83 SS G_CDS: -5.03 Total: 8.80 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -22.54 -2.26 -24.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.015 kcal (2) G-P(sol) polarization free energy of solvation -22.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds