Wall clock time and date at job start Tue Mar 31 2020 13:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00265 * 64.56498 * 3 2 1 5 5 N 3.51036 * 140.68755 * 64.56250 * 2 1 3 6 6 C 1.41154 * 119.99743 * 244.56491 * 3 2 1 7 7 C 1.38984 * 120.00387 * 5.26283 * 6 3 2 8 8 H 1.07995 * 119.99991 * 341.36362 * 7 6 3 9 9 C 1.40838 * 120.00178 * 161.35444 * 7 6 3 10 10 N 1.30341 * 120.00092 * 350.61951 * 9 7 6 11 11 Si 1.86804 * 120.00135 * 170.61583 * 9 7 6 12 12 H 1.48502 * 109.46923 * 60.00322 * 11 9 7 13 13 H 1.48494 * 109.46937 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46976 * 300.00496 * 11 9 7 15 15 N 1.38341 * 119.99897 * 185.26770 * 6 3 2 16 16 C 1.39386 * 120.00418 * 118.81813 * 15 6 3 17 17 C 1.39094 * 120.01681 * 353.32477 * 16 15 6 18 18 N 1.32072 * 119.97348 * 179.75490 * 17 16 15 19 19 C 1.32588 * 120.02145 * 0.49457 * 18 17 16 20 20 O 1.35769 * 119.98040 * 179.73734 * 19 18 17 21 21 C 1.42899 * 117.00238 * 0.02562 * 20 19 18 22 22 F 1.39905 * 109.46700 * 60.00451 * 21 20 19 23 23 F 1.39897 * 109.47258 * 180.02562 * 21 20 19 24 24 F 1.39894 * 109.47501 * 300.00309 * 21 20 19 25 25 C 1.38858 * 120.03621 * 359.75671 * 19 18 17 26 26 N 1.32126 * 120.02488 * 359.97438 * 25 19 18 27 27 H 0.97000 * 119.99547 * 185.04766 * 10 9 7 28 28 H 0.97005 * 119.99954 * 298.53910 * 15 6 3 29 29 H 1.07999 * 120.01050 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.98705 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.5316 -1.1199 5 7 3.8520 -0.9553 -2.0084 6 6 3.2735 0.5260 1.1040 7 6 2.5828 0.9418 2.2361 8 1 1.5248 1.1503 2.1769 9 6 3.2626 1.0912 3.4605 10 7 4.4896 0.6685 3.5804 11 14 2.4056 1.8954 4.9126 12 1 1.1944 1.1129 5.2678 13 1 3.3299 1.9325 6.0742 14 1 2.0114 3.2803 4.5497 15 7 4.6525 0.6270 1.0590 16 6 5.2637 1.8753 1.1643 17 6 4.4892 3.0306 1.1748 18 7 5.0689 4.2127 1.2794 19 6 6.3892 4.2988 1.3646 20 8 6.9846 5.5147 1.4668 21 6 6.1275 6.6580 1.4770 22 9 5.2527 6.5752 2.5657 23 9 6.9001 7.8192 1.5864 24 9 5.3905 6.6991 0.2886 25 6 7.1634 3.1462 1.3490 26 7 6.5848 1.9625 1.2497 27 1 4.9328 0.7043 4.4426 28 1 5.1943 -0.1713 0.9583 29 1 3.4140 2.9609 1.1009 30 1 8.2388 3.2173 1.4181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:40 Heat of formation + Delta-G solvation = -93.543551 kcal Electronic energy + Delta-G solvation = -26746.636090 eV Core-core repulsion = 22127.286312 eV Total energy + Delta-G solvation = -4619.349778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.22949 -49.01230 -48.86263 -42.37346 -40.04086 -38.79725 -37.03801 -36.54070 -35.46785 -34.87634 -32.59528 -30.21614 -28.90422 -27.16708 -25.72250 -24.62110 -23.06773 -21.13031 -20.89253 -20.27951 -20.04840 -19.06706 -18.94234 -17.92754 -17.78849 -17.58502 -16.74702 -16.58966 -15.78561 -15.67421 -15.64278 -15.33828 -15.30789 -15.07662 -15.06387 -14.85229 -14.63787 -14.53269 -14.33619 -14.24780 -13.91828 -13.47416 -13.39245 -13.26112 -13.17924 -12.75523 -12.71406 -12.69249 -12.35990 -12.11586 -11.61110 -11.40021 -10.42926 -9.89897 -9.32968 -8.51562 -7.20047 -0.15451 0.06598 0.44828 0.61403 1.34356 1.47000 1.51157 1.86369 2.00169 2.04564 2.11918 2.24695 2.52922 2.57787 2.69187 2.80698 3.09243 3.11943 3.36566 3.40266 3.54268 3.83503 4.10527 4.48316 4.56633 4.62137 4.65763 5.27969 5.40214 5.55557 5.91677 5.96996 6.16287 6.45372 6.54008 6.98134 7.18741 7.34444 7.61007 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.004799 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.492903 B = 5833.281859 C = 6655.724206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C 0.330 3.670 3 C -0.315 4.315 4 C 0.315 3.685 5 N -0.555 5.555 6 C 0.369 3.631 7 C -0.363 4.363 8 H 0.116 0.884 9 C 0.048 3.952 10 N -0.716 5.716 11 Si 0.967 3.033 12 H -0.251 1.251 13 H -0.261 1.261 14 H -0.253 1.253 15 N -0.623 5.623 16 C 0.381 3.619 17 C 0.035 3.965 18 N -0.457 5.457 19 C 0.156 3.844 20 O -0.299 6.299 21 C 0.614 3.386 22 F -0.167 7.167 23 F -0.131 7.131 24 F -0.167 7.167 25 C 0.134 3.866 26 N -0.475 5.475 27 H 0.314 0.686 28 H 0.411 0.589 29 H 0.179 0.821 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 10.264 7.345 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C 0.023 3.977 3 C -0.334 4.334 4 C 0.009 3.991 5 N -0.238 5.238 6 C 0.265 3.735 7 C -0.390 4.390 8 H 0.134 0.866 9 C -0.184 4.184 10 N -0.334 5.334 11 Si 0.787 3.213 12 H -0.175 1.175 13 H -0.184 1.184 14 H -0.177 1.177 15 N -0.247 5.247 16 C 0.143 3.857 17 C -0.133 4.133 18 N -0.182 5.182 19 C -0.025 4.025 20 O -0.213 6.213 21 C 0.522 3.478 22 F -0.149 7.149 23 F -0.113 7.113 24 F -0.149 7.149 25 C -0.029 4.029 26 N -0.197 5.197 27 H 0.127 0.873 28 H 0.250 0.750 29 H 0.196 0.804 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.860 9.731 6.116 13.924 hybrid contribution -0.166 0.227 0.835 0.881 sum 7.694 9.958 6.951 14.376 Atomic orbital electron populations 1.81086 1.12723 1.18454 1.11157 1.24757 0.91359 0.90275 0.91310 1.12811 0.82559 1.40024 0.97976 1.25290 0.92119 0.90339 0.91346 1.81101 1.10439 1.19188 1.13058 1.16650 0.79730 0.87900 0.89251 1.20593 0.98520 1.28657 0.91195 0.86620 1.26987 0.94948 0.93315 1.03191 1.69496 1.10715 1.23490 1.29669 0.85324 0.79850 0.80190 0.75986 1.17452 1.18426 1.17675 1.41015 1.04430 1.05145 1.74123 1.18927 0.89027 0.87137 0.90622 1.23002 1.01995 0.85030 1.03319 1.67787 1.09624 1.28949 1.11800 1.20273 0.90103 0.84652 1.07423 1.86520 1.34009 1.11533 1.89268 1.19185 0.75050 0.78710 0.74823 1.93290 1.70208 1.95912 1.55496 1.93293 1.75905 1.46138 1.95949 1.93291 1.77744 1.96139 1.47707 1.23050 1.02351 0.82644 0.94832 1.68128 1.09278 1.25374 1.16954 0.87310 0.75035 0.80405 0.76888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.47 18.54 19.00 0.35 -24.11 16 2 C 0.33 13.91 13.88 88.33 1.23 15.13 16 3 C -0.31 -12.51 5.88 -20.07 -0.12 -12.63 16 4 C 0.32 13.33 14.82 88.33 1.31 14.63 16 5 N -0.55 -24.84 18.54 19.01 0.35 -24.49 16 6 C 0.37 13.46 4.95 39.01 0.19 13.66 16 7 C -0.36 -12.78 7.04 23.09 0.16 -12.62 16 8 H 0.12 4.13 6.96 -2.91 -0.02 4.11 16 9 C 0.05 1.55 4.77 85.55 0.41 1.96 16 10 N -0.72 -23.52 10.83 21.98 0.24 -23.28 16 11 Si 0.97 26.68 29.58 68.60 2.03 28.71 16 12 H -0.25 -7.00 7.11 99.48 0.71 -6.29 16 13 H -0.26 -6.90 7.11 99.48 0.71 -6.19 16 14 H -0.25 -7.27 7.11 99.48 0.71 -6.56 16 15 N -0.62 -21.53 3.32 -184.37 -0.61 -22.15 16 16 C 0.38 12.76 6.03 132.84 0.80 13.56 16 17 C 0.03 1.17 9.74 84.86 0.83 2.00 16 18 N -0.46 -14.94 8.26 -307.57 -2.54 -17.48 16 19 C 0.16 4.50 7.18 84.73 0.61 5.11 16 20 O -0.30 -7.74 10.37 -90.96 -0.94 -8.69 16 21 C 0.61 15.69 3.51 113.37 0.40 16.08 16 22 F -0.17 -4.61 16.56 44.97 0.74 -3.87 16 23 F -0.13 -2.89 17.53 44.97 0.79 -2.10 16 24 F -0.17 -4.63 16.56 44.97 0.74 -3.89 16 25 C 0.13 3.47 11.16 84.80 0.95 4.42 16 26 N -0.48 -14.64 10.52 -192.05 -2.02 -16.66 16 27 H 0.31 9.46 8.29 -92.71 -0.77 8.69 16 28 H 0.41 14.15 8.94 -92.70 -0.83 13.32 16 29 H 0.18 6.06 6.24 -2.91 -0.02 6.05 16 30 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -46.28 309.39 6.36 -39.92 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.46 Total: 16.78 kcal Atomic # 6 Polarization: 54.54 SS G_CDS: 6.76 Total: 61.30 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -4.23 Total: -128.17 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.94 Total: -8.69 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 2.28 Total: -9.86 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: 2.03 Total: 28.71 kcal Total: -46.28 6.36 -39.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.624 kcal (2) G-P(sol) polarization free energy of solvation -46.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds