Wall clock time and date at job start Tue Mar 31 2020 14:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 120.00331 * 2 1 4 4 H 1.48499 * 109.47000 * 275.41121 * 3 2 1 5 5 H 1.48501 * 109.46772 * 35.40850 * 3 2 1 6 6 H 1.48502 * 109.47101 * 155.40573 * 3 2 1 7 7 C 1.39942 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00065 * 341.74681 * 7 2 1 9 9 C 1.41436 * 119.99965 * 161.73512 * 7 2 1 10 10 C 1.40788 * 120.17626 * 330.18400 * 9 7 2 11 11 C 1.37721 * 120.04656 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41069 * 359.67641 * 11 10 9 13 13 C 1.39911 * 120.35690 * 0.60423 * 12 11 10 14 14 C 1.47828 * 120.02860 * 179.69486 * 13 12 11 15 15 O 1.21538 * 120.00294 * 179.72888 * 14 13 12 16 16 N 1.34776 * 119.99997 * 359.72072 * 14 13 12 17 17 C 1.38743 * 120.00101 * 180.02562 * 16 14 13 18 18 N 1.32421 * 120.52729 * 0.02562 * 17 16 14 19 19 C 1.32061 * 121.21068 * 180.02562 * 18 17 16 20 20 N 1.31302 * 122.18399 * 0.02562 * 19 18 17 21 21 C 1.33828 * 121.01908 * 359.97438 * 20 19 18 22 22 S 1.75745 * 131.29437 * 179.69413 * 21 20 19 23 23 C 1.75349 * 92.19034 * 179.97438 * 22 21 20 24 24 C 1.31897 * 111.40699 * 0.32868 * 23 22 21 25 25 C 1.39851 * 119.09976 * 0.02562 * 21 20 19 26 26 C 1.39055 * 119.94069 * 359.42054 * 13 12 11 27 27 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.98122 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79699 * 180.02562 * 11 10 9 30 30 H 1.08005 * 119.82462 * 180.31645 * 12 11 10 31 31 H 0.97003 * 120.00241 * 0.02562 * 16 14 13 32 32 H 1.08001 * 118.90984 * 179.97438 * 19 18 17 33 33 H 1.08000 * 124.29681 * 180.02562 * 23 22 21 34 34 H 1.08003 * 122.59208 * 179.72999 * 24 23 22 35 35 H 1.07997 * 120.20515 * 180.26046 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5924 1.4097 0.5827 7 6 2.0079 -1.2120 0.0005 8 1 1.5087 -2.1236 0.2939 9 6 3.3689 -1.2430 -0.3833 10 6 3.8625 -0.3110 -1.3160 11 6 5.1881 -0.3441 -1.6883 12 6 6.0446 -1.2857 -1.1460 13 6 5.5709 -2.2236 -0.2222 14 6 6.4909 -3.2307 0.3476 15 8 6.0800 -4.0421 1.1537 16 7 7.7854 -3.2492 -0.0271 17 6 8.6488 -4.1948 0.5072 18 7 8.2120 -5.0842 1.3856 19 6 9.0221 -5.9898 1.9031 20 7 10.2928 -6.0580 1.5794 21 6 10.8273 -5.2024 0.7001 22 16 12.4661 -5.0442 0.0852 23 6 12.0249 -3.6862 -0.9327 24 6 10.7476 -3.3833 -0.8042 25 6 10.0127 -4.2234 0.1223 26 6 4.2351 -2.2040 0.1639 27 1 -0.4850 0.8400 -0.0004 28 1 3.2014 0.4304 -1.7398 29 1 5.5626 0.3731 -2.4037 30 1 7.0836 -1.2998 -1.4408 31 1 8.1135 -2.6015 -0.6703 32 1 8.6265 -6.6972 2.6168 33 1 12.7128 -3.1612 -1.5788 34 1 10.2848 -2.5720 -1.3464 35 1 3.8659 -2.9233 0.8798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188658283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:03 Heat of formation + Delta-G solvation = 66.837723 kcal Electronic energy + Delta-G solvation = -23170.913958 eV Core-core repulsion = 19646.668788 eV Total energy + Delta-G solvation = -3524.245169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41693 -39.56867 -37.53127 -36.41282 -35.30462 -33.83879 -32.64859 -30.87591 -30.22777 -29.63568 -25.76020 -25.27962 -24.53874 -22.93346 -21.54492 -20.86713 -20.51147 -19.44623 -18.07424 -17.57452 -16.62611 -16.17566 -15.81822 -15.71534 -15.53724 -14.83742 -14.71414 -14.43119 -14.39704 -13.98223 -13.77936 -13.06580 -12.94190 -12.86267 -12.53684 -12.19327 -11.89172 -11.65131 -11.35879 -11.20331 -11.08342 -10.91386 -10.67351 -10.16678 -9.98518 -9.95270 -9.78119 -9.36896 -8.99827 -8.95476 -8.28677 -8.02337 -7.90460 -7.11100 -4.66785 0.21391 0.80238 0.87191 1.54406 1.73134 1.90581 2.38675 2.69275 2.97227 3.10114 3.16465 3.32629 3.73313 3.83846 4.01031 4.06096 4.28586 4.35279 4.51551 4.78170 5.11525 5.18966 5.23503 5.49720 5.67703 5.72967 5.80701 5.86141 6.22897 6.35438 6.50951 6.53793 6.58558 6.83399 7.04041 7.21220 7.31744 7.35994 7.62952 7.79600 8.01962 8.16846 8.34094 8.40041 8.59267 9.90604 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.002754 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.377915 B =10164.983357 C =10962.779794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.220 4.220 11 C -0.079 4.079 12 C -0.222 4.222 13 C -0.109 4.109 14 C 0.553 3.447 15 O -0.465 6.465 16 N -0.647 5.647 17 C 0.470 3.530 18 N -0.519 5.519 19 C 0.348 3.652 20 N -0.524 5.524 21 C 0.112 3.888 22 S 0.157 5.843 23 C -0.206 4.206 24 C -0.092 4.092 25 C -0.223 4.223 26 C -0.130 4.130 27 H 0.288 0.712 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.421 0.579 32 H 0.207 0.793 33 H 0.177 0.823 34 H 0.150 0.850 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.815 -3.244 -2.757 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.079 3.921 10 C -0.240 4.240 11 C -0.097 4.097 12 C -0.242 4.242 13 C -0.112 4.112 14 C 0.343 3.657 15 O -0.333 6.333 16 N -0.294 5.294 17 C 0.220 3.780 18 N -0.242 5.242 19 C 0.055 3.945 20 N -0.244 5.244 21 C -0.139 4.139 22 S 0.415 5.585 23 C -0.340 4.340 24 C -0.123 4.123 25 C -0.240 4.240 26 C -0.151 4.151 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.260 0.740 32 H 0.223 0.777 33 H 0.194 0.806 34 H 0.167 0.833 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.114 -5.071 -1.291 21.752 hybrid contribution -0.636 2.466 -1.249 2.837 sum 20.478 -2.605 -2.540 20.799 Atomic orbital electron populations 1.69684 1.08140 1.30597 1.33705 1.26200 0.94788 1.01853 0.90916 0.86300 0.81396 0.79630 0.78953 1.19442 1.21502 1.16635 1.19558 0.92847 0.96421 1.37765 0.88664 1.17684 0.93150 0.91032 0.90261 1.21208 0.95732 1.04265 1.02756 1.20497 0.93662 0.97184 0.98350 1.20330 0.97879 1.01059 1.04943 1.19262 0.94030 0.96885 1.01053 1.19180 0.80385 0.84852 0.81285 1.90837 1.74850 1.37557 1.30105 1.43858 1.09800 1.31615 1.44114 1.18639 0.85058 0.86956 0.87316 1.68421 1.37965 1.05928 1.11846 1.24991 0.83634 0.92325 0.93509 1.68054 1.15021 1.25702 1.15666 1.23713 0.99350 0.94181 0.96633 1.84234 1.03159 1.30957 1.40150 1.25144 0.99803 1.02901 1.06199 1.20588 0.93425 1.00028 0.98253 1.20184 0.94768 1.02893 1.06176 1.21279 0.90747 1.01907 1.01123 0.90134 0.87712 0.88053 0.88771 0.73978 0.77669 0.80550 0.83262 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.37 13.93 55.55 0.77 -19.60 16 2 C 0.08 2.06 5.40 -17.34 -0.09 1.97 16 3 Si 0.91 19.53 24.52 -169.99 -4.17 15.36 16 4 H -0.27 -5.50 6.71 56.52 0.38 -5.12 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.24 -5.33 6.86 56.52 0.39 -4.94 16 7 C -0.44 -11.33 9.57 -37.73 -0.36 -11.69 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.08 1.97 5.10 -106.87 -0.55 1.42 16 10 C -0.22 -4.85 7.17 -38.81 -0.28 -5.13 16 11 C -0.08 -1.49 10.01 -39.72 -0.40 -1.89 16 12 C -0.22 -3.94 9.55 -38.91 -0.37 -4.31 16 13 C -0.11 -2.18 5.87 -105.04 -0.62 -2.80 16 14 C 0.55 10.46 7.73 -12.34 -0.10 10.36 16 15 O -0.46 -10.15 14.62 5.33 0.08 -10.08 16 16 N -0.65 -9.64 5.33 -11.75 -0.06 -9.71 16 17 C 0.47 7.13 7.52 -154.25 -1.16 5.97 16 18 N -0.52 -8.61 7.98 -13.37 -0.11 -8.71 16 19 C 0.35 4.77 12.26 -92.34 -1.13 3.64 16 20 N -0.52 -7.20 10.47 -13.31 -0.14 -7.34 16 21 C 0.11 1.44 7.70 -16.08 -0.12 1.32 16 22 S 0.16 1.44 23.23 -107.50 -2.50 -1.06 16 23 C -0.21 -1.54 11.02 28.83 0.32 -1.23 16 24 C -0.09 -0.84 10.03 -38.78 -0.39 -1.22 16 25 C -0.22 -2.82 6.08 -105.25 -0.64 -3.46 16 26 C -0.13 -2.98 9.34 -38.44 -0.36 -3.34 16 27 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.11 2.29 4.72 -52.48 -0.25 2.05 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.09 1.27 6.38 -52.48 -0.33 0.94 16 31 H 0.42 4.84 6.07 -40.82 -0.25 4.60 16 32 H 0.21 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.15 0.97 7.69 -52.48 -0.40 0.56 16 35 H 0.12 2.75 7.64 -52.49 -0.40 2.34 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -30.21 318.12 -10.07 -40.28 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -2.50 Total: 6.45 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -6.24 Total: -10.40 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.46 Total: -45.36 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.17 Total: 15.36 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.21 -10.07 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188658283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.121 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds