Wall clock time and date at job start Tue Mar 31 2020 14:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47403 * 269.99811 * 3 2 1 5 5 H 1.48504 * 109.46838 * 29.99814 * 3 2 1 6 6 H 1.48501 * 109.47381 * 149.99188 * 3 2 1 7 7 C 1.37878 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00146 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99833 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40008 * 66.46647 * 9 7 2 11 11 O 1.42099 * 106.40540 * 293.54111 * 9 7 2 12 12 N 1.65608 * 107.21790 * 180.02562 * 9 7 2 13 13 C 1.39207 * 119.99525 * 65.00183 * 12 9 7 14 14 C 1.36166 * 126.22574 * 359.69098 * 13 12 9 15 15 C 1.39768 * 107.81657 * 179.84624 * 14 13 12 16 16 N 1.30839 * 108.32152 * 0.42403 * 15 14 13 17 17 N 1.35251 * 126.21728 * 180.02562 * 13 12 9 18 18 C 1.46500 * 126.04265 * 0.02562 * 17 13 12 19 19 C 1.50699 * 109.47083 * 89.99968 * 18 17 13 20 20 C 1.38223 * 120.01390 * 264.72777 * 19 18 17 21 21 C 1.38226 * 120.02661 * 179.72516 * 20 19 18 22 22 C 1.38275 * 120.04938 * 0.54609 * 21 20 19 23 23 C 1.38174 * 120.02289 * 359.72799 * 22 21 20 24 24 C 1.38445 * 120.01581 * 84.99983 * 19 18 17 25 25 F 1.35103 * 120.02296 * 359.97438 * 24 19 18 26 26 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00068 * 244.72731 * 12 9 7 28 28 H 1.08009 * 126.09303 * 359.97438 * 14 13 12 29 29 H 1.08002 * 125.84297 * 180.15896 * 15 14 13 30 30 H 1.09000 * 109.47549 * 209.99682 * 18 17 13 31 31 H 1.08997 * 109.47108 * 330.00233 * 18 17 13 32 32 H 1.08000 * 119.98497 * 359.97438 * 20 19 18 33 33 H 1.07997 * 119.97561 * 180.25217 * 21 20 19 34 34 H 1.08000 * 119.98347 * 179.74639 * 22 21 20 35 35 H 1.08004 * 120.01088 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1672 -0.6495 1.2511 11 8 4.1683 -0.6499 -1.2484 12 7 4.2567 -2.7760 0.0011 13 6 3.9765 -3.5913 -1.0919 14 6 3.3063 -3.2241 -2.2189 15 6 3.2466 -4.3367 -3.0627 16 7 3.8461 -5.3363 -2.4683 17 7 4.3149 -4.8940 -1.2247 18 6 5.0428 -5.7001 -0.2415 19 6 4.0616 -6.3573 0.6946 20 6 3.7567 -5.7635 1.9050 21 6 2.8525 -6.3632 2.7613 22 6 2.2603 -7.5633 2.4133 23 6 2.5678 -8.1615 1.2063 24 6 3.4693 -7.5589 0.3451 25 9 3.7703 -8.1427 -0.8355 26 1 -0.4850 0.8401 -0.0004 27 1 4.7425 -3.1332 0.7608 28 1 2.8959 -2.2465 -2.4251 29 1 2.7811 -4.3675 -4.0367 30 1 5.6221 -6.4662 -0.7570 31 1 5.7147 -5.0584 0.3284 32 1 4.2222 -4.8285 2.1799 33 1 2.6118 -5.8964 3.7050 34 1 1.5571 -8.0329 3.0850 35 1 2.1049 -9.0987 0.9345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:16 Heat of formation + Delta-G solvation = -11.435667 kcal Electronic energy + Delta-G solvation = -25524.629134 eV Core-core repulsion = 21566.220551 eV Total energy + Delta-G solvation = -3958.408583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.91493 -40.91774 -39.09815 -35.93598 -34.83085 -34.69499 -34.03077 -33.12691 -30.85549 -30.31717 -28.16922 -26.52154 -26.24480 -23.02312 -22.13651 -21.24707 -20.45447 -18.93563 -18.11872 -17.70774 -17.40234 -16.69318 -16.47573 -16.22743 -15.61178 -15.20500 -14.91965 -14.69290 -14.30681 -14.19014 -13.63566 -13.46827 -13.29400 -13.23326 -12.97896 -12.88874 -12.40429 -12.28289 -11.85648 -11.70555 -11.49884 -11.34655 -11.18656 -10.94920 -10.84021 -10.66686 -10.21803 -10.02189 -9.29686 -9.25659 -9.16687 -8.85560 -8.66661 -7.63864 -6.88104 -5.44620 0.87119 1.04689 1.59448 2.32410 2.77938 3.00496 3.11044 3.18041 3.37394 3.49186 3.85323 3.90979 4.11729 4.38160 4.40689 4.49841 4.70131 4.84361 5.04516 5.09615 5.12766 5.24392 5.33129 5.47116 5.61934 5.72712 5.87641 5.93933 6.08439 6.09357 6.22226 6.25979 6.70321 6.71625 6.89574 7.16842 7.39135 7.56355 8.11135 8.15670 8.60041 10.23657 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.004686 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.092568 B = 5973.404125 C = 6562.510018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.156 3.844 3 Si 0.799 3.201 4 H -0.243 1.243 5 H -0.253 1.253 6 H -0.223 1.223 7 C -1.005 5.005 8 H 0.127 0.873 9 S 2.668 3.332 10 O -0.994 6.994 11 O -0.987 6.987 12 N -1.035 6.035 13 C 0.352 3.648 14 C -0.300 4.300 15 C 0.073 3.927 16 N -0.301 5.301 17 N -0.389 5.389 18 C 0.177 3.823 19 C -0.153 4.153 20 C -0.072 4.072 21 C -0.129 4.129 22 C -0.082 4.082 23 C -0.161 4.161 24 C 0.128 3.872 25 F -0.128 7.128 26 H 0.282 0.718 27 H 0.410 0.590 28 H 0.170 0.830 29 H 0.185 0.815 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -13.341 3.473 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.065 4.065 3 Si 0.618 3.382 4 H -0.166 1.166 5 H -0.177 1.177 6 H -0.145 1.145 7 C -1.140 5.140 8 H 0.145 0.855 9 S 2.769 3.231 10 O -0.984 6.984 11 O -0.976 6.976 12 N -0.778 5.778 13 C 0.129 3.871 14 C -0.333 4.333 15 C -0.113 4.113 16 N -0.123 5.123 17 N -0.177 5.177 18 C 0.056 3.944 19 C -0.155 4.155 20 C -0.090 4.090 21 C -0.148 4.148 22 C -0.100 4.100 23 C -0.180 4.180 24 C 0.108 3.892 25 F -0.107 7.107 26 H 0.093 0.907 27 H 0.243 0.757 28 H 0.187 0.813 29 H 0.202 0.798 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.756 -13.718 3.323 15.649 hybrid contribution -0.503 1.031 0.394 1.213 sum 6.253 -12.688 3.717 14.625 Atomic orbital electron populations 1.69975 1.06463 1.29162 1.38669 1.24367 0.94789 0.98553 0.88745 0.87914 0.83420 0.84745 0.82099 1.16650 1.17686 1.14499 1.30134 1.13964 1.02632 1.67283 0.85502 1.01973 0.78163 0.69205 0.73710 1.93515 1.85897 1.73961 1.45034 1.93461 1.85135 1.74321 1.44706 1.53583 1.69739 1.31150 1.23370 1.17588 0.96796 0.83288 0.89387 1.21308 1.13763 1.03471 0.94747 1.23572 0.97723 0.90212 0.99809 1.77408 1.20520 1.22202 0.92160 1.48466 1.47962 1.06094 1.15196 1.20265 0.91301 0.95265 0.87610 1.20144 1.02603 0.95552 0.97198 1.21025 0.96693 0.98929 0.92399 1.21239 0.97138 0.95824 1.00557 1.21082 0.98332 0.95089 0.95537 1.21160 0.99583 1.02007 0.95204 1.17515 0.97094 0.92294 0.82308 1.91541 1.91640 1.83330 1.44149 0.90697 0.75694 0.81300 0.79794 0.87448 0.88300 0.84983 0.84810 0.84869 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.58 13.96 55.43 0.77 -21.81 16 2 C 0.16 4.28 5.47 -17.82 -0.10 4.18 16 3 Si 0.80 19.59 26.54 -169.99 -4.51 15.08 16 4 H -0.24 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.22 -5.54 5.61 56.52 0.32 -5.22 16 7 C -1.00 -26.71 9.48 30.60 0.29 -26.42 16 8 H 0.13 3.49 8.06 -52.48 -0.42 3.07 16 9 S 2.67 63.43 3.79 -107.50 -0.41 63.02 16 10 O -0.99 -24.91 16.02 -57.17 -0.92 -25.82 16 11 O -0.99 -25.05 15.03 -57.17 -0.86 -25.91 16 12 N -1.03 -19.56 5.87 31.10 0.18 -19.38 16 13 C 0.35 6.79 7.58 -153.41 -1.16 5.63 16 14 C -0.30 -6.07 9.27 -39.76 -0.37 -6.44 16 15 C 0.07 1.28 12.01 -17.40 -0.21 1.07 16 16 N -0.30 -5.39 12.56 30.60 0.38 -5.01 16 17 N -0.39 -6.63 3.60 -61.64 -0.22 -6.86 16 18 C 0.18 2.32 6.15 -5.19 -0.03 2.29 16 19 C -0.15 -1.99 5.47 -104.55 -0.57 -2.56 16 20 C -0.07 -0.85 9.68 -39.59 -0.38 -1.24 16 21 C -0.13 -1.38 10.05 -39.57 -0.40 -1.78 16 22 C -0.08 -0.82 10.04 -39.59 -0.40 -1.21 16 23 C -0.16 -1.78 10.03 -39.52 -0.40 -2.18 16 24 C 0.13 1.69 7.24 -39.42 -0.29 1.41 16 25 F -0.13 -1.85 16.57 2.25 0.04 -1.81 16 26 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.41 6.17 7.60 -34.48 -0.26 5.91 16 28 H 0.17 3.70 6.48 -52.48 -0.34 3.36 16 29 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.11 1.28 7.79 -51.93 -0.40 0.87 16 31 H 0.10 1.02 7.40 -51.93 -0.38 0.64 16 32 H 0.13 1.38 7.57 -52.49 -0.40 0.98 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -33.33 321.67 -7.82 -41.15 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.12 Total: 9.76 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -4.01 Total: -27.26 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 1.12 Total: -53.05 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -1.78 Total: -51.74 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.51 Total: 15.08 kcal Atomic # 16 Polarization: 63.43 SS G_CDS: -0.41 Total: 63.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.33 -7.82 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.714 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds