Wall clock time and date at job start Tue Mar 31 2020 14:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47403 * 269.99811 * 3 2 1 5 5 H 1.48504 * 109.46838 * 29.99814 * 3 2 1 6 6 H 1.48501 * 109.47381 * 149.99188 * 3 2 1 7 7 C 1.37878 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00146 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99833 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40008 * 66.46647 * 9 7 2 11 11 O 1.42099 * 106.40540 * 293.54111 * 9 7 2 12 12 N 1.65608 * 107.21790 * 180.02562 * 9 7 2 13 13 C 1.39207 * 119.99525 * 65.00183 * 12 9 7 14 14 C 1.36166 * 126.22574 * 359.69098 * 13 12 9 15 15 C 1.39768 * 107.81657 * 179.84624 * 14 13 12 16 16 N 1.30839 * 108.32152 * 0.42403 * 15 14 13 17 17 N 1.35251 * 126.21728 * 180.02562 * 13 12 9 18 18 C 1.46500 * 126.04265 * 0.02562 * 17 13 12 19 19 C 1.50699 * 109.47083 * 89.99968 * 18 17 13 20 20 C 1.38223 * 120.01390 * 264.72777 * 19 18 17 21 21 C 1.38226 * 120.02661 * 179.72516 * 20 19 18 22 22 C 1.38275 * 120.04938 * 0.54609 * 21 20 19 23 23 C 1.38174 * 120.02289 * 359.72799 * 22 21 20 24 24 C 1.38445 * 120.01581 * 84.99983 * 19 18 17 25 25 F 1.35103 * 120.02296 * 359.97438 * 24 19 18 26 26 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00068 * 244.72731 * 12 9 7 28 28 H 1.08009 * 126.09303 * 359.97438 * 14 13 12 29 29 H 1.08002 * 125.84297 * 180.15896 * 15 14 13 30 30 H 1.09000 * 109.47549 * 209.99682 * 18 17 13 31 31 H 1.08997 * 109.47108 * 330.00233 * 18 17 13 32 32 H 1.08000 * 119.98497 * 359.97438 * 20 19 18 33 33 H 1.07997 * 119.97561 * 180.25217 * 21 20 19 34 34 H 1.08000 * 119.98347 * 179.74639 * 22 21 20 35 35 H 1.08004 * 120.01088 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1672 -0.6495 1.2511 11 8 4.1683 -0.6499 -1.2484 12 7 4.2567 -2.7760 0.0011 13 6 3.9765 -3.5913 -1.0919 14 6 3.3063 -3.2241 -2.2189 15 6 3.2466 -4.3367 -3.0627 16 7 3.8461 -5.3363 -2.4683 17 7 4.3149 -4.8940 -1.2247 18 6 5.0428 -5.7001 -0.2415 19 6 4.0616 -6.3573 0.6946 20 6 3.7567 -5.7635 1.9050 21 6 2.8525 -6.3632 2.7613 22 6 2.2603 -7.5633 2.4133 23 6 2.5678 -8.1615 1.2063 24 6 3.4693 -7.5589 0.3451 25 9 3.7703 -8.1427 -0.8355 26 1 -0.4850 0.8401 -0.0004 27 1 4.7425 -3.1332 0.7608 28 1 2.8959 -2.2465 -2.4251 29 1 2.7811 -4.3675 -4.0367 30 1 5.6221 -6.4662 -0.7570 31 1 5.7147 -5.0584 0.3284 32 1 4.2222 -4.8285 2.1799 33 1 2.6118 -5.8964 3.7050 34 1 1.5571 -8.0329 3.0850 35 1 2.1049 -9.0987 0.9345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:15 Heat of formation + Delta-G solvation = -34.341057 kcal Electronic energy + Delta-G solvation = -25525.622387 eV Core-core repulsion = 21566.220551 eV Total energy + Delta-G solvation = -3959.401835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.92869 -42.30863 -39.98927 -37.90331 -36.69903 -36.34100 -35.19100 -35.15772 -31.81816 -31.32573 -29.68689 -28.56042 -27.34176 -23.93349 -23.15026 -22.76421 -21.80266 -20.79983 -19.61663 -19.34097 -18.57575 -18.47446 -17.43640 -17.26916 -17.07761 -16.67207 -16.33815 -16.01820 -15.87839 -15.54226 -15.16874 -15.00314 -14.79443 -14.40972 -14.25908 -14.15123 -13.78733 -13.45534 -13.36222 -13.24322 -13.07716 -12.80354 -12.78993 -12.64349 -12.55771 -12.11873 -11.93144 -11.64758 -11.32756 -11.19424 -10.17806 -10.01149 -9.72011 -9.17603 -8.94733 -7.53478 -0.28900 -0.00875 0.16993 0.89454 1.07501 1.17338 1.21698 1.50338 1.89625 1.90110 2.19747 2.43343 2.62246 3.12475 3.21208 3.41454 3.44600 3.73753 3.79700 3.97411 4.02561 4.17007 4.22702 4.34277 4.41528 4.56012 4.79379 4.82343 5.00734 5.10807 5.15098 5.26353 5.36015 5.38598 5.51062 5.74767 5.85936 6.03466 6.13880 6.52343 6.71120 8.22376 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.004686 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.092568 B = 5973.404125 C = 6562.510018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.115 3.885 3 Si 0.820 3.180 4 H -0.237 1.237 5 H -0.220 1.220 6 H -0.228 1.228 7 C -1.021 5.021 8 H 0.106 0.894 9 S 2.699 3.301 10 O -1.005 7.005 11 O -1.003 7.003 12 N -1.021 6.021 13 C 0.341 3.659 14 C -0.332 4.332 15 C 0.076 3.924 16 N -0.308 5.308 17 N -0.380 5.380 18 C 0.165 3.835 19 C -0.166 4.166 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.078 4.078 23 C -0.164 4.164 24 C 0.102 3.898 25 F -0.141 7.141 26 H 0.293 0.707 27 H 0.429 0.571 28 H 0.147 0.853 29 H 0.218 0.782 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -13.882 4.481 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.103 4.103 3 Si 0.637 3.363 4 H -0.160 1.160 5 H -0.142 1.142 6 H -0.150 1.150 7 C -1.155 5.155 8 H 0.124 0.876 9 S 2.798 3.202 10 O -0.995 6.995 11 O -0.993 6.993 12 N -0.770 5.770 13 C 0.118 3.882 14 C -0.365 4.365 15 C -0.110 4.110 16 N -0.129 5.129 17 N -0.168 5.168 18 C 0.045 3.955 19 C -0.168 4.168 20 C -0.105 4.105 21 C -0.153 4.153 22 C -0.096 4.096 23 C -0.183 4.183 24 C 0.082 3.918 25 F -0.120 7.120 26 H 0.103 0.897 27 H 0.265 0.735 28 H 0.164 0.836 29 H 0.235 0.765 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.200 -14.276 4.355 16.572 hybrid contribution -0.662 1.048 0.121 1.245 sum 6.539 -13.228 4.476 15.420 Atomic orbital electron populations 1.70000 1.07406 1.30567 1.39554 1.25060 0.95553 1.01076 0.88614 0.87563 0.82880 0.83014 0.82842 1.16001 1.14175 1.15020 1.30519 1.16198 1.01865 1.66929 0.87557 1.00894 0.76511 0.69860 0.72899 1.93494 1.85547 1.75069 1.45387 1.93438 1.84822 1.75586 1.45446 1.52926 1.69725 1.30044 1.24296 1.17568 0.97226 0.84326 0.89073 1.21356 1.15207 1.03586 0.96344 1.24044 0.97278 0.88910 1.00763 1.77379 1.20505 1.22398 0.92653 1.48734 1.47268 1.05387 1.15375 1.20694 0.91594 0.95778 0.87407 1.20165 1.03160 0.95833 0.97687 1.21290 0.97292 0.99520 0.92386 1.21616 0.96434 0.96058 1.01145 1.21491 0.98060 0.94653 0.95353 1.21472 0.98913 1.02663 0.95253 1.17860 0.98410 0.93020 0.82506 1.91501 1.91922 1.83583 1.44989 0.89676 0.73463 0.83554 0.76550 0.86473 0.85597 0.83956 0.82707 0.81718 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.12 13.96 21.45 0.30 -46.83 16 2 C 0.11 6.31 5.47 84.66 0.46 6.77 16 3 Si 0.82 38.89 26.54 68.60 1.82 40.71 16 4 H -0.24 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.22 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.23 -10.96 5.61 99.48 0.56 -10.40 16 7 C -1.02 -54.90 9.48 67.73 0.64 -54.25 16 8 H 0.11 6.01 8.06 -2.91 -0.02 5.99 16 9 S 2.70 127.12 3.79 -56.49 -0.21 126.90 16 10 O -1.01 -49.22 16.02 -128.00 -2.05 -51.27 16 11 O -1.00 -50.72 15.03 -128.00 -1.92 -52.64 16 12 N -1.02 -37.78 5.87 -55.51 -0.33 -38.11 16 13 C 0.34 13.02 7.58 131.42 1.00 14.01 16 14 C -0.33 -13.53 9.27 22.16 0.21 -13.32 16 15 C 0.08 2.61 12.01 85.21 1.02 3.63 16 16 N -0.31 -10.76 12.56 -57.09 -0.72 -11.48 16 17 N -0.38 -12.60 3.60 -348.92 -1.26 -13.86 16 18 C 0.17 4.10 6.15 85.63 0.53 4.63 16 19 C -0.17 -4.14 5.47 -19.82 -0.11 -4.25 16 20 C -0.09 -1.91 9.68 22.26 0.22 -1.69 16 21 C -0.13 -2.56 10.05 22.28 0.22 -2.33 16 22 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 23 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 24 C 0.10 2.60 7.24 22.38 0.16 2.76 16 25 F -0.14 -4.02 16.57 44.97 0.75 -3.27 16 26 H 0.29 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.43 12.23 7.60 -96.75 -0.74 11.50 16 28 H 0.15 6.62 6.48 -2.91 -0.02 6.60 16 29 H 0.22 5.59 8.06 -2.91 -0.02 5.57 16 30 H 0.12 2.66 7.79 -2.39 -0.02 2.64 16 31 H 0.13 2.35 7.40 -2.39 -0.02 2.33 16 32 H 0.14 2.71 7.57 -2.91 -0.02 2.69 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.13 321.67 1.44 -69.68 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.27 Total: 28.45 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 4.80 Total: -48.29 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -2.00 Total: -110.27 kcal Atomic # 8 Polarization: -99.94 SS G_CDS: -3.97 Total: -103.91 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.75 Total: -3.27 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.82 Total: 40.71 kcal Atomic # 16 Polarization: 127.12 SS G_CDS: -0.21 Total: 126.90 kcal Total: -71.13 1.44 -69.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.344 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds