Wall clock time and date at job start Tue Mar 31 2020 14:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39788 * 125.75594 * 2 1 4 4 C 1.36176 * 107.86715 * 180.02562 * 3 2 1 5 5 N 1.39176 * 126.28324 * 180.02562 * 4 3 2 6 6 S 1.65608 * 119.99803 * 0.02562 * 5 4 3 7 7 O 1.42102 * 106.39826 * 178.53759 * 6 5 4 8 8 O 1.42099 * 106.40116 * 311.45887 * 6 5 4 9 9 C 1.76203 * 107.21790 * 65.00194 * 6 5 4 10 10 H 1.08003 * 120.00020 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99833 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00026 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 119.99948 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47041 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47154 * 119.99780 * 13 11 9 16 16 H 1.48493 * 109.47288 * 239.99941 * 13 11 9 17 17 N 1.36087 * 107.43472 * 0.26264 * 4 3 2 18 18 C 1.40155 * 126.11258 * 179.71957 * 17 4 3 19 19 C 1.38872 * 120.05673 * 145.00096 * 18 17 4 20 20 C 1.38109 * 119.98259 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.09181 * 0.02562 * 20 19 18 22 22 C 1.38478 * 120.10885 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.98986 * 180.02562 * 22 21 20 24 24 C 1.38362 * 120.01734 * 359.76964 * 22 21 20 25 25 N 1.30863 * 125.75778 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47235 * 90.00018 * 1 2 3 27 27 H 1.09003 * 109.46861 * 209.99977 * 1 2 3 28 28 H 1.09002 * 109.47601 * 329.99279 * 1 2 3 29 29 H 1.08006 * 126.06437 * 0.04154 * 3 2 1 30 30 H 0.96995 * 120.00072 * 180.29937 * 5 4 3 31 31 H 0.97002 * 120.00292 * 180.02562 * 12 11 9 32 32 H 1.07998 * 120.01159 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.95213 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.94134 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.04531 * 180.27392 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3238 1.1344 0.0000 4 6 3.6197 0.7161 -0.0006 5 7 4.7481 1.5308 -0.0003 6 16 4.5799 3.1783 0.0015 7 8 5.8949 3.7158 0.0363 8 8 3.6408 3.4868 -1.0193 9 6 3.8201 3.6233 1.5278 10 1 3.5613 2.8587 2.2453 11 6 3.5549 4.9475 1.8055 12 7 3.8696 5.8785 0.9315 13 14 2.7488 5.4193 3.4232 14 1 2.4978 4.1958 4.2265 15 1 3.6475 6.3300 4.1770 16 1 1.4609 6.1071 3.1524 17 7 3.6089 -0.6447 -0.0069 18 6 4.7346 -1.4797 -0.0151 19 6 4.7093 -2.6880 0.6688 20 6 5.8196 -3.5094 0.6601 21 6 6.9571 -3.1301 -0.0283 22 6 6.9865 -1.9260 -0.7116 23 9 8.0991 -1.5580 -1.3839 24 6 5.8749 -1.1021 -0.7103 25 7 2.2716 -1.0619 -0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9868 2.1605 0.0006 30 1 5.6330 1.1336 -0.0051 31 1 3.6834 6.8102 1.1270 32 1 3.8219 -2.9851 1.2080 33 1 5.7992 -4.4493 1.1918 34 1 7.8238 -3.7744 -0.0338 35 1 5.8958 -0.1649 -1.2467 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192942780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:06 Heat of formation + Delta-G solvation = -26.187468 kcal Electronic energy + Delta-G solvation = -25230.989587 eV Core-core repulsion = 21271.941318 eV Total energy + Delta-G solvation = -3959.048269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08852 -41.40158 -38.96238 -35.59703 -35.07359 -34.28299 -33.60995 -33.21669 -31.00299 -30.31142 -28.33425 -27.41277 -26.28577 -23.45520 -22.73098 -20.96266 -20.11686 -18.93334 -18.68627 -17.67822 -16.91144 -16.49183 -16.25675 -16.11147 -15.80781 -15.20522 -15.03467 -14.86947 -14.17706 -14.15108 -13.82856 -13.55913 -13.26399 -13.06493 -12.68214 -12.42127 -12.26607 -12.15901 -12.05894 -11.68183 -11.47213 -11.31110 -11.07316 -10.96596 -10.65673 -10.57668 -10.50188 -10.29664 -9.86902 -9.37570 -9.12712 -9.01323 -8.24032 -7.80814 -6.84511 -5.48251 0.68807 0.87655 1.72612 2.17426 2.47945 2.99887 3.08012 3.09146 3.16605 3.33333 3.89661 4.02273 4.17665 4.43088 4.51083 4.66892 4.77243 4.79741 5.00994 5.22261 5.25581 5.44083 5.66463 5.69549 5.77225 5.79390 5.83208 5.88986 5.99281 6.02767 6.14402 6.30000 6.49815 6.62584 6.92652 7.05610 7.19660 7.52619 7.83028 7.89836 8.74576 10.10226 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.004827 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.977567 B = 5799.715682 C = 6883.961894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.113 3.887 3 C -0.292 4.292 4 C 0.364 3.636 5 N -1.045 6.045 6 S 2.697 3.303 7 O -0.987 6.987 8 O -0.978 6.978 9 C -1.008 5.008 10 H 0.108 0.892 11 C 0.134 3.866 12 N -0.843 5.843 13 Si 0.926 3.074 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.268 1.268 17 N -0.355 5.355 18 C 0.206 3.794 19 C -0.127 4.127 20 C -0.067 4.067 21 C -0.166 4.166 22 C 0.129 3.871 23 F -0.131 7.131 24 C -0.190 4.190 25 N -0.302 5.302 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.412 0.588 31 H 0.293 0.707 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -15.694 0.837 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.324 4.324 4 C 0.144 3.856 5 N -0.788 5.788 6 S 2.797 3.203 7 O -0.977 6.977 8 O -0.968 6.968 9 C -1.143 5.143 10 H 0.127 0.873 11 C -0.084 4.084 12 N -0.472 5.472 13 Si 0.749 3.251 14 H -0.184 1.184 15 H -0.196 1.196 16 H -0.193 1.193 17 N -0.137 5.137 18 C 0.113 3.887 19 C -0.147 4.147 20 C -0.086 4.086 21 C -0.186 4.186 22 C 0.109 3.891 23 F -0.110 7.110 24 C -0.212 4.212 25 N -0.123 5.123 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.195 0.805 30 H 0.247 0.753 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.220 -16.063 -0.001 16.064 hybrid contribution 0.275 1.027 1.163 1.575 sum 0.055 -15.036 1.162 15.081 Atomic orbital electron populations 1.20230 0.86089 1.03520 1.03226 1.22189 0.96995 0.90096 0.96140 1.21275 0.88477 1.01937 1.20739 1.17868 0.88922 0.81280 0.97502 1.54548 1.10362 1.27676 1.86222 1.01410 0.74104 0.67752 0.77011 1.93426 1.41541 1.73233 1.89477 1.93415 1.63639 1.79583 1.60177 1.30300 1.57828 1.00836 1.25345 0.87338 1.24750 0.90861 0.94385 0.98452 1.69886 1.39276 1.03092 1.34962 0.86035 0.79132 0.79246 0.80665 1.18430 1.19564 1.19338 1.45792 1.04570 1.02022 1.61349 1.17088 0.84285 0.91325 0.96031 1.21074 1.00134 0.93561 0.99920 1.20904 0.91293 0.99325 0.97084 1.21183 1.00623 0.96166 1.00596 1.17253 0.82805 0.94190 0.94839 1.91543 1.49925 1.91609 1.77909 1.21018 0.93191 1.03069 1.03900 1.77418 0.83588 1.21381 1.29936 0.90180 0.90928 0.89733 0.80496 0.75324 0.89623 0.83993 0.84008 0.84131 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.44 36.00 0.38 -0.50 16 2 C 0.11 1.92 7.20 -82.43 -0.59 1.33 16 3 C -0.29 -5.87 9.21 -39.74 -0.37 -6.23 16 4 C 0.36 7.33 7.32 -152.68 -1.12 6.21 16 5 N -1.05 -21.71 5.48 31.25 0.17 -21.53 16 6 S 2.70 69.41 4.58 -107.50 -0.49 68.92 16 7 O -0.99 -27.87 18.02 -57.17 -1.03 -28.90 16 8 O -0.98 -27.14 16.20 -57.17 -0.93 -28.07 16 9 C -1.01 -26.51 8.97 30.60 0.27 -26.23 16 10 H 0.11 2.66 7.81 -52.48 -0.41 2.25 16 11 C 0.13 3.56 5.46 -17.82 -0.10 3.47 16 12 N -0.84 -23.60 13.19 55.43 0.73 -22.87 16 13 Si 0.93 19.73 29.54 -169.99 -5.02 14.71 16 14 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 N -0.36 -6.38 3.76 -9.79 -0.04 -6.42 16 18 C 0.21 3.15 6.39 -83.61 -0.53 2.62 16 19 C -0.13 -1.55 9.76 -39.39 -0.38 -1.93 16 20 C -0.07 -0.63 10.04 -39.62 -0.40 -1.03 16 21 C -0.17 -1.64 10.02 -39.48 -0.40 -2.04 16 22 C 0.13 1.63 7.30 -39.45 -0.29 1.34 16 23 F -0.13 -1.72 17.27 2.25 0.04 -1.68 16 24 C -0.19 -2.76 8.42 -39.33 -0.33 -3.09 16 25 N -0.30 -5.26 12.33 33.66 0.41 -4.85 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.18 3.80 6.49 -52.48 -0.34 3.46 16 30 H 0.41 7.49 6.24 -34.48 -0.22 7.27 16 31 H 0.29 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.14 2.16 6.32 -52.48 -0.33 1.83 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -33.74 325.98 -8.06 -41.81 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -2.97 Total: 10.07 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -3.86 Total: -26.09 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 1.28 Total: -55.67 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -1.96 Total: -56.97 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 69.41 SS G_CDS: -0.49 Total: 68.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.74 -8.06 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.618 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds