Wall clock time and date at job start Tue Mar 31 2020 14:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48504 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47184 * 299.99597 * 3 2 1 6 6 H 1.48499 * 109.47297 * 59.99943 * 3 2 1 7 7 C 1.38639 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00433 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.35674 * 117.00396 * 185.06086 * 9 7 2 11 11 C 1.38705 * 120.11945 * 354.40511 * 10 9 7 12 12 C 1.38331 * 120.02613 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.86388 * 179.97438 * 12 11 10 14 14 C 1.38675 * 120.27450 * 359.97438 * 12 11 10 15 15 C 1.37982 * 120.24072 * 359.72911 * 14 12 11 16 16 C 1.39293 * 119.96898 * 0.54742 * 15 14 12 17 17 C 1.48281 * 120.13476 * 179.72291 * 16 15 14 18 18 C 1.39962 * 120.48241 * 309.74952 * 17 16 15 19 19 C 1.38139 * 118.37336 * 179.71020 * 18 17 16 20 20 C 1.39010 * 119.24388 * 0.54883 * 19 18 17 21 21 O 1.35677 * 119.54434 * 179.70867 * 20 19 18 22 22 C 1.42902 * 116.99432 * 179.72947 * 21 20 19 23 23 F 1.39898 * 109.47249 * 60.00366 * 22 21 20 24 24 F 1.39893 * 109.47333 * 299.99830 * 22 21 20 25 25 N 1.32277 * 120.90674 * 359.43669 * 20 19 18 26 26 C 1.31811 * 121.77872 * 0.27225 * 25 20 19 27 27 H 0.97000 * 119.99601 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98373 * 359.97438 * 11 10 9 29 29 H 1.07994 * 119.88022 * 180.02562 * 14 12 11 30 30 H 1.08004 * 120.01199 * 180.27455 * 15 14 12 31 31 H 1.08005 * 120.81100 * 359.95614 * 18 17 16 32 32 H 1.08009 * 120.37694 * 180.28283 * 19 18 17 33 33 H 1.08998 * 109.46639 * 180.02562 * 22 21 20 34 34 H 1.08000 * 119.67050 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0695 -3.5037 0.1077 11 6 3.4551 -3.4401 0.0942 12 6 4.2023 -4.5991 0.2031 13 9 5.5516 -4.5333 0.1891 14 6 3.5721 -5.8282 0.3266 15 6 2.1946 -5.9039 0.3474 16 6 1.4322 -4.7438 0.2326 17 6 -0.0485 -4.8215 0.2484 18 6 -0.7213 -5.7193 -0.5884 19 6 -2.1010 -5.7596 -0.5338 20 6 -2.7715 -4.9062 0.3348 21 8 -4.1269 -4.9366 0.3891 22 6 -4.7596 -4.0406 1.3050 23 9 -4.4261 -2.7229 0.9740 24 9 -4.3250 -4.3191 2.6053 25 7 -2.1061 -4.0688 1.1130 26 6 -0.7898 -4.0026 1.0962 27 1 -0.4849 0.8401 -0.0004 28 1 3.9506 -2.4853 -0.0021 29 1 4.1618 -6.7290 0.4116 30 1 1.7077 -6.8626 0.4481 31 1 -0.1749 -6.3675 -1.2576 32 1 -2.6527 -6.4434 -1.1620 33 1 -5.8407 -4.1672 1.2488 34 1 -0.2811 -3.3058 1.7459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242419054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:30 Heat of formation + Delta-G solvation = -155.236201 kcal Electronic energy + Delta-G solvation = -26842.719472 eV Core-core repulsion = 22291.942092 eV Total energy + Delta-G solvation = -4550.777380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.79890 -48.38780 -46.92493 -40.29173 -39.14693 -37.54395 -36.40832 -32.58351 -32.44274 -31.38888 -29.50393 -28.15635 -25.96172 -25.58430 -23.37751 -23.04995 -21.79569 -20.99000 -18.94199 -18.38933 -18.05246 -17.60315 -17.58693 -16.36701 -15.92122 -15.56789 -15.30113 -15.15539 -15.00724 -14.68349 -14.31622 -14.11941 -13.73491 -13.64051 -13.60633 -13.39553 -13.24018 -12.95554 -12.84591 -12.60831 -12.44897 -12.06369 -11.98023 -11.77692 -11.34502 -11.16962 -10.89028 -10.80122 -10.52096 -9.73059 -9.57330 -9.28890 -9.00632 -8.60994 -7.98394 -7.32029 -6.60529 -4.20800 1.22888 1.59523 1.98408 2.05020 2.67131 3.05172 3.07207 3.12937 3.72707 3.82859 4.03293 4.28708 4.47787 4.73010 4.76989 4.92161 4.94189 5.02497 5.08879 5.30644 5.32595 5.44970 5.51120 5.64106 5.92232 6.02816 6.20272 6.32492 6.50154 6.59820 6.64974 6.75563 6.86895 6.96267 7.15685 7.27276 7.51910 7.80508 8.21240 8.82348 9.43411 10.54190 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.005029 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.070220 B = 5566.100183 C = 8001.599555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.400 4.400 8 H 0.096 0.904 9 O -0.153 6.153 10 C 0.184 3.816 11 C -0.269 4.269 12 C 0.147 3.853 13 F -0.150 7.150 14 C -0.249 4.249 15 C -0.031 4.031 16 C -0.140 4.140 17 C -0.084 4.084 18 C -0.045 4.045 19 C -0.181 4.181 20 C 0.287 3.713 21 O -0.325 6.325 22 C 0.424 3.576 23 F -0.189 7.189 24 F -0.196 7.196 25 N -0.516 5.516 26 C 0.181 3.819 27 H 0.274 0.726 28 H 0.142 0.858 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.171 0.829 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -10.008 0.506 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.113 0.887 9 O -0.054 6.054 10 C 0.128 3.872 11 C -0.289 4.289 12 C 0.128 3.872 13 F -0.129 7.129 14 C -0.269 4.269 15 C -0.049 4.049 16 C -0.142 4.142 17 C -0.086 4.086 18 C -0.071 4.071 19 C -0.201 4.201 20 C 0.110 3.890 21 O -0.238 6.238 22 C 0.334 3.666 23 F -0.170 7.170 24 F -0.178 7.178 25 N -0.236 5.236 26 C 0.025 3.975 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.187 0.813 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.085 -9.326 0.933 11.175 hybrid contribution 1.302 0.673 -0.432 1.528 sum -4.782 -8.654 0.501 9.900 Atomic orbital electron populations 1.70057 1.05869 1.28138 1.43408 1.25334 0.95876 0.98937 0.95992 0.85638 0.79250 0.80107 0.78456 1.18923 1.19992 1.19905 1.21439 0.92002 0.80432 1.53627 0.88674 1.83983 1.34075 1.11389 1.75965 1.18951 0.89012 0.87618 0.91649 1.20986 0.94030 0.98413 1.15486 1.17537 0.75870 0.94379 0.99406 1.91423 1.30244 1.97377 1.93862 1.20449 0.94913 0.95818 1.15717 1.20511 0.92275 0.96361 0.95763 1.17599 0.90517 0.91165 1.14911 1.19441 0.93348 0.97950 0.97904 1.21435 0.92577 0.96816 0.96234 1.20820 0.94236 1.02729 1.02341 1.19616 0.82604 0.93166 0.93622 1.86711 1.17784 1.59463 1.59832 1.22992 0.95673 0.74290 0.73664 1.93151 1.94358 1.37753 1.91774 1.93086 1.92124 1.93030 1.39567 1.67311 1.11649 1.20793 1.23802 1.22593 0.86490 0.93864 0.94588 0.91632 0.84069 0.86065 0.85741 0.84134 0.84400 0.81299 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.58 13.67 55.48 0.76 -22.82 16 2 C 0.05 1.19 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.40 -10.44 9.49 30.88 0.29 -10.15 16 8 H 0.10 2.33 5.21 -52.48 -0.27 2.05 16 9 O -0.15 -3.98 8.12 0.33 0.00 -3.98 16 10 C 0.18 4.10 6.56 -38.75 -0.25 3.84 16 11 C -0.27 -5.61 9.14 -39.37 -0.36 -5.97 16 12 C 0.15 2.75 7.29 -39.39 -0.29 2.46 16 13 F -0.15 -2.72 17.26 2.25 0.04 -2.68 16 14 C -0.25 -4.07 10.01 -39.51 -0.40 -4.47 16 15 C -0.03 -0.49 9.53 -39.28 -0.37 -0.87 16 16 C -0.14 -2.67 5.51 -104.72 -0.58 -3.25 16 17 C -0.08 -1.58 5.28 -104.75 -0.55 -2.13 16 18 C -0.05 -0.70 9.68 -38.97 -0.38 -1.08 16 19 C -0.18 -2.75 10.03 -39.33 -0.39 -3.14 16 20 C 0.29 5.09 7.19 -17.07 -0.12 4.96 16 21 O -0.32 -4.93 10.41 -18.73 -0.19 -5.12 16 22 C 0.42 5.69 6.05 101.05 0.61 6.30 16 23 F -0.19 -3.27 16.56 2.25 0.04 -3.23 16 24 F -0.20 -3.04 16.56 2.25 0.04 -3.00 16 25 N -0.52 -10.50 8.04 -13.03 -0.10 -10.60 16 26 C 0.18 3.76 9.96 -17.19 -0.17 3.58 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.14 2.99 5.64 -52.49 -0.30 2.69 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.60 8.05 -52.48 -0.42 1.17 16 31 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.17 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.17 3.64 7.69 -52.49 -0.40 3.24 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -30.79 319.92 -4.91 -35.70 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.22 Total: 4.97 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.06 Total: -8.82 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.65 Total: -33.42 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.19 Total: -9.10 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.11 Total: -8.91 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.79 -4.91 -35.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242419054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.539 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds