Wall clock time and date at job start Tue Mar 31 2020 14:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86802 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46815 * 239.99945 * 3 2 1 5 5 H 1.48503 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47328 * 120.00048 * 3 2 1 7 7 C 1.40021 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.41375 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.40718 * 119.76790 * 180.02562 * 9 7 2 11 11 C 1.38245 * 119.18735 * 180.02562 * 10 9 7 12 12 C 1.38743 * 118.68870 * 359.72250 * 11 10 9 13 13 C 1.39853 * 119.45759 * 0.52020 * 12 11 10 14 14 C 1.48331 * 119.60282 * 179.75058 * 13 12 11 15 15 C 1.39353 * 120.06946 * 0.02562 * 14 13 12 16 16 C 1.38527 * 119.92301 * 180.25280 * 15 14 13 17 17 O 1.35905 * 119.96318 * 179.73349 * 16 15 14 18 18 C 1.38741 * 120.07471 * 359.45299 * 16 15 14 19 19 C 1.38693 * 120.14550 * 0.27946 * 18 16 15 20 20 O 1.35903 * 119.96969 * 180.02562 * 19 18 16 21 21 C 1.42901 * 116.99236 * 0.02562 * 20 19 18 22 22 F 1.39899 * 109.47526 * 59.99903 * 21 20 19 23 23 F 1.39903 * 109.46807 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47192 * 299.99716 * 21 20 19 25 25 C 1.38577 * 120.07114 * 359.97438 * 19 18 16 26 26 N 1.32232 * 120.79463 * 359.47086 * 13 12 11 27 27 H 0.96995 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.40895 * 0.02562 * 10 9 7 29 29 H 1.08005 * 120.65846 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.26907 * 180.26561 * 12 11 10 31 31 H 1.07998 * 120.03933 * 0.02562 * 15 14 13 32 32 H 0.96705 * 113.99576 * 269.72504 * 17 16 15 33 33 H 1.08000 * 119.92888 * 180.24749 * 18 16 15 34 34 H 1.08000 * 120.03459 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0001 9 6 1.3007 -2.4369 0.0016 10 6 2.0092 -3.6527 0.0027 11 6 1.3059 -4.8429 0.0032 12 6 -0.0807 -4.7971 0.0086 13 6 -0.7280 -3.5574 0.0022 14 6 -2.2103 -3.5047 0.0023 15 6 -2.9510 -4.6851 0.0092 16 6 -4.3352 -4.6324 0.0039 17 8 -5.0583 -5.7831 0.0052 18 6 -4.9843 -3.4062 0.0032 19 6 -4.2502 -2.2295 0.0019 20 8 -4.8897 -1.0303 0.0018 21 6 -6.3184 -1.0572 0.0036 22 9 -6.7710 -1.7244 1.1469 23 9 -6.8094 0.2529 0.0038 24 9 -6.7737 -1.7261 -1.1376 25 6 -2.8651 -2.2752 0.0019 26 7 -0.0344 -2.4316 0.0017 27 1 -0.4850 0.8400 0.0004 28 1 3.0892 -3.6561 0.0031 29 1 1.8256 -5.7897 0.0045 30 1 -0.6556 -5.7114 0.0134 31 1 -2.4464 -5.6399 0.0149 32 1 -5.2679 -6.1168 -0.8779 33 1 -6.0636 -3.3678 0.0031 34 1 -2.2940 -1.3585 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242986221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:49 Heat of formation + Delta-G solvation = -176.851979 kcal Electronic energy + Delta-G solvation = -26884.297989 eV Core-core repulsion = 22332.583279 eV Total energy + Delta-G solvation = -4551.714710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.43644 -48.16014 -48.02427 -40.20517 -38.60833 -38.11964 -35.97663 -33.73661 -31.59131 -30.70227 -29.49658 -28.80203 -25.93392 -25.76940 -23.31230 -22.65412 -21.19813 -21.04064 -19.29840 -19.14157 -18.97832 -17.81382 -17.49038 -16.27831 -15.84700 -15.47916 -15.25367 -15.15941 -14.88221 -14.73977 -14.56381 -14.45856 -14.32141 -14.15553 -14.10185 -13.95287 -13.82629 -13.29489 -12.80333 -12.66682 -12.31968 -11.74511 -11.52914 -11.30735 -11.16004 -11.11525 -10.87281 -10.60203 -10.52694 -10.06196 -9.54449 -8.99534 -8.26024 -8.21234 -7.78162 -7.45260 -6.53959 -4.63991 1.14129 1.46010 1.57331 2.65779 2.85886 2.88204 3.04674 3.05956 3.12789 3.78084 3.83458 3.87685 4.03986 4.22811 4.70003 4.88424 5.04839 5.26907 5.42712 5.70791 5.78211 5.80134 6.05165 6.23117 6.32127 6.46710 6.51112 6.59507 6.65445 6.97899 7.02780 7.14766 7.20490 7.42935 7.58023 7.69949 7.87313 8.09572 8.53538 8.77979 9.88216 10.19227 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004478 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.111998 B = 6251.584154 C = 8451.630483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.085 0.915 9 C 0.256 3.744 10 C -0.265 4.265 11 C -0.060 4.060 12 C -0.295 4.295 13 C 0.168 3.832 14 C 0.037 3.963 15 C -0.150 4.150 16 C 0.131 3.869 17 O -0.496 6.496 18 C -0.227 4.227 19 C 0.105 3.895 20 O -0.303 6.303 21 C 0.602 3.398 22 F -0.167 7.167 23 F -0.135 7.135 24 F -0.169 7.169 25 C -0.091 4.091 26 N -0.465 5.465 27 H 0.275 0.725 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.389 0.611 33 H 0.133 0.867 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -3.113 -1.645 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.155 4.155 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.459 4.459 8 H 0.103 0.897 9 C 0.130 3.870 10 C -0.288 4.288 11 C -0.084 4.084 12 C -0.319 4.319 13 C 0.024 3.976 14 C 0.036 3.964 15 C -0.169 4.169 16 C 0.086 3.914 17 O -0.305 6.305 18 C -0.247 4.247 19 C 0.064 3.936 20 O -0.223 6.223 21 C 0.511 3.489 22 F -0.149 7.149 23 F -0.117 7.117 24 F -0.151 7.151 25 C -0.110 4.110 26 N -0.178 5.178 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.156 0.844 32 H 0.244 0.756 33 H 0.150 0.850 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.292 -1.887 -1.032 11.495 hybrid contribution 0.346 -0.257 -0.482 0.647 sum -10.946 -2.145 -1.514 11.256 Atomic orbital electron populations 1.70013 1.07267 1.28173 1.28405 1.26036 0.94927 1.01116 0.93415 0.86352 0.80090 0.80311 0.79902 1.18933 1.20117 1.18924 1.19591 0.94322 0.89262 1.42687 0.89685 1.18489 0.87634 0.92100 0.88755 1.21836 0.98945 0.93516 1.14476 1.20801 0.93746 0.96823 0.96986 1.21182 0.94638 0.96626 1.19405 1.19493 0.90608 0.90445 0.97008 1.18454 0.92444 0.90799 0.94709 1.21574 0.92444 0.99371 1.03556 1.17777 0.89101 0.84568 0.99920 1.84816 1.73777 1.38510 1.33443 1.21592 1.00337 0.92024 1.10718 1.18439 0.91984 0.81029 1.02193 1.86488 1.15015 1.31455 1.89302 1.19397 0.80431 0.74470 0.74620 1.93293 1.89488 1.80662 1.51481 1.93288 1.86321 1.35739 1.96325 1.93276 1.89437 1.80618 1.51741 1.21056 0.89000 1.01411 0.99569 1.68681 1.07622 1.24996 1.16480 0.91336 0.88042 0.88217 0.88210 0.84388 0.75561 0.84969 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.89 11.10 55.55 0.62 -17.27 16 2 C 0.07 1.70 5.50 -17.35 -0.10 1.61 16 3 Si 0.91 17.88 29.56 -169.99 -5.02 12.85 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -10.86 9.14 -37.72 -0.34 -11.20 16 8 H 0.09 2.01 7.85 -52.49 -0.41 1.60 16 9 C 0.26 6.65 6.55 -85.01 -0.56 6.09 16 10 C -0.26 -6.16 9.83 -38.64 -0.38 -6.54 16 11 C -0.06 -1.26 10.15 -39.39 -0.40 -1.66 16 12 C -0.29 -6.27 9.47 -38.79 -0.37 -6.64 16 13 C 0.17 3.90 6.73 -82.94 -0.56 3.34 16 14 C 0.04 0.75 5.87 -104.93 -0.62 0.13 16 15 C -0.15 -2.54 9.35 -39.06 -0.37 -2.91 16 16 C 0.13 2.01 6.69 -39.29 -0.26 1.75 16 17 O -0.50 -6.33 13.50 -19.44 -0.26 -6.59 16 18 C -0.23 -3.56 8.19 -39.23 -0.32 -3.88 16 19 C 0.11 1.84 6.48 -39.29 -0.25 1.59 16 20 O -0.30 -4.97 10.37 -19.44 -0.20 -5.17 16 21 C 0.60 8.16 3.42 101.05 0.35 8.51 16 22 F -0.17 -2.24 15.56 2.25 0.04 -2.20 16 23 F -0.14 -1.72 17.53 2.25 0.04 -1.68 16 24 F -0.17 -2.16 15.55 2.25 0.04 -2.13 16 25 C -0.09 -1.83 9.51 -39.06 -0.37 -2.20 16 26 N -0.47 -12.04 6.91 -7.68 -0.05 -12.09 16 27 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 28 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.10 1.83 6.17 -52.49 -0.32 1.50 16 31 H 0.14 2.14 6.16 -52.49 -0.32 1.81 16 32 H 0.39 2.94 9.06 45.56 0.41 3.36 16 33 H 0.13 1.85 5.07 -52.49 -0.27 1.59 16 34 H 0.17 3.87 7.17 -52.49 -0.38 3.49 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -27.71 314.18 -5.90 -33.61 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -1.27 Total: 7.96 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -4.55 Total: -12.02 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.56 Total: -29.36 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.46 Total: -11.76 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.71 -5.90 -33.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242986221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.242 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds