Wall clock time and date at job start Tue Mar 31 2020 14:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86802 * 119.99990 * 2 1 4 4 H 1.48501 * 109.46815 * 239.99945 * 3 2 1 5 5 H 1.48503 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47328 * 120.00048 * 3 2 1 7 7 C 1.40021 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.41375 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.40718 * 119.76790 * 180.02562 * 9 7 2 11 11 C 1.38245 * 119.18735 * 180.02562 * 10 9 7 12 12 C 1.38743 * 118.68870 * 359.72250 * 11 10 9 13 13 C 1.39853 * 119.45759 * 0.52020 * 12 11 10 14 14 C 1.48331 * 119.60282 * 179.75058 * 13 12 11 15 15 C 1.39353 * 120.06946 * 0.02562 * 14 13 12 16 16 C 1.38527 * 119.92301 * 180.25280 * 15 14 13 17 17 O 1.35905 * 119.96318 * 179.73349 * 16 15 14 18 18 C 1.38741 * 120.07471 * 359.45299 * 16 15 14 19 19 C 1.38693 * 120.14550 * 0.27946 * 18 16 15 20 20 O 1.35903 * 119.96969 * 180.02562 * 19 18 16 21 21 C 1.42901 * 116.99236 * 0.02562 * 20 19 18 22 22 F 1.39899 * 109.47526 * 59.99903 * 21 20 19 23 23 F 1.39903 * 109.46807 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47192 * 299.99716 * 21 20 19 25 25 C 1.38577 * 120.07114 * 359.97438 * 19 18 16 26 26 N 1.32232 * 120.79463 * 359.47086 * 13 12 11 27 27 H 0.96995 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.40895 * 0.02562 * 10 9 7 29 29 H 1.08005 * 120.65846 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.26907 * 180.26561 * 12 11 10 31 31 H 1.07998 * 120.03933 * 0.02562 * 15 14 13 32 32 H 0.96705 * 113.99576 * 269.72504 * 17 16 15 33 33 H 1.08000 * 119.92888 * 180.24749 * 18 16 15 34 34 H 1.08000 * 120.03459 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0001 9 6 1.3007 -2.4369 0.0016 10 6 2.0092 -3.6527 0.0027 11 6 1.3059 -4.8429 0.0032 12 6 -0.0807 -4.7971 0.0086 13 6 -0.7280 -3.5574 0.0022 14 6 -2.2103 -3.5047 0.0023 15 6 -2.9510 -4.6851 0.0092 16 6 -4.3352 -4.6324 0.0039 17 8 -5.0583 -5.7831 0.0052 18 6 -4.9843 -3.4062 0.0032 19 6 -4.2502 -2.2295 0.0019 20 8 -4.8897 -1.0303 0.0018 21 6 -6.3184 -1.0572 0.0036 22 9 -6.7710 -1.7244 1.1469 23 9 -6.8094 0.2529 0.0038 24 9 -6.7737 -1.7261 -1.1376 25 6 -2.8651 -2.2752 0.0019 26 7 -0.0344 -2.4316 0.0017 27 1 -0.4850 0.8400 0.0004 28 1 3.0892 -3.6561 0.0031 29 1 1.8256 -5.7897 0.0045 30 1 -0.6556 -5.7114 0.0134 31 1 -2.4464 -5.6399 0.0149 32 1 -5.2679 -6.1168 -0.8779 33 1 -6.0636 -3.3678 0.0031 34 1 -2.2940 -1.3585 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242986221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:49 Heat of formation + Delta-G solvation = -193.772593 kcal Electronic energy + Delta-G solvation = -26885.031722 eV Core-core repulsion = 22332.583279 eV Total energy + Delta-G solvation = -4552.448443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.52073 -49.22883 -49.10304 -41.53205 -40.15621 -39.46283 -37.27886 -35.49215 -33.13926 -32.42322 -30.86981 -30.36741 -27.54808 -27.09129 -24.81165 -24.06191 -22.82994 -22.47362 -20.59975 -20.24049 -20.17025 -19.29822 -18.91777 -17.64029 -17.19502 -16.99093 -16.65327 -16.36737 -16.32713 -15.91354 -15.86575 -15.62691 -15.52494 -15.49734 -15.38045 -15.27593 -15.16516 -14.47853 -14.41095 -14.38066 -13.83562 -13.16200 -13.02764 -12.83483 -12.71983 -12.65920 -12.58657 -12.16017 -11.82541 -11.70158 -11.24866 -10.53566 -9.96075 -9.58685 -9.54990 -9.11881 -8.30328 -6.51064 -0.28984 0.12975 0.40576 0.98865 1.20460 1.41513 1.52889 1.54866 1.70056 2.22828 2.43189 2.68054 2.88890 2.95143 3.04620 3.51446 3.73617 3.93857 3.96089 4.05655 4.30184 4.36140 4.58978 4.71047 4.84947 4.91123 4.96943 5.08418 5.15801 5.29099 5.48140 5.52024 5.68984 5.79473 5.85574 6.15367 6.25820 6.73472 6.79370 6.94170 8.10966 8.43628 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004478 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.111998 B = 6251.584154 C = 8451.630483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.222 3.778 10 C -0.286 4.286 11 C -0.057 4.057 12 C -0.291 4.291 13 C 0.146 3.854 14 C 0.015 3.985 15 C -0.144 4.144 16 C 0.153 3.847 17 O -0.492 6.492 18 C -0.219 4.219 19 C 0.109 3.891 20 O -0.320 6.320 21 C 0.608 3.392 22 F -0.163 7.163 23 F -0.129 7.129 24 F -0.160 7.160 25 C -0.117 4.117 26 N -0.497 5.497 27 H 0.278 0.722 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.157 0.843 32 H 0.417 0.583 33 H 0.154 0.846 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 -4.773 -1.782 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.108 0.892 9 C 0.096 3.904 10 C -0.309 4.309 11 C -0.081 4.081 12 C -0.314 4.314 13 C 0.003 3.997 14 C 0.014 3.986 15 C -0.164 4.164 16 C 0.108 3.892 17 O -0.306 6.306 18 C -0.238 4.238 19 C 0.067 3.933 20 O -0.240 6.240 21 C 0.518 3.482 22 F -0.145 7.145 23 F -0.110 7.110 24 F -0.142 7.142 25 C -0.136 4.136 26 N -0.210 5.210 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.277 0.723 33 H 0.171 0.829 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.726 -3.587 -1.190 13.275 hybrid contribution 0.609 0.072 -0.451 0.761 sum -12.116 -3.515 -1.641 12.722 Atomic orbital electron populations 1.70144 1.08660 1.29006 1.29383 1.26890 0.95709 1.04250 0.92601 0.85246 0.78642 0.75772 0.79972 1.18374 1.19557 1.18446 1.19924 0.94776 0.90292 1.44749 0.89248 1.18977 0.88385 0.93507 0.89542 1.22041 0.99701 0.93728 1.15444 1.21253 0.93974 0.97672 0.95224 1.21618 0.95115 0.97254 1.17363 1.20112 0.92315 0.90693 0.96542 1.18426 0.91267 0.92071 0.96856 1.21662 0.93116 0.98687 1.02911 1.17677 0.88602 0.85318 0.97639 1.84764 1.72967 1.37065 1.35823 1.21803 1.01207 0.91378 1.09405 1.18313 0.91224 0.81995 1.01804 1.86451 1.16823 1.31424 1.89302 1.19232 0.79281 0.74846 0.74853 1.93301 1.89256 1.80588 1.51333 1.93307 1.85995 1.35400 1.96313 1.93291 1.89157 1.80461 1.51340 1.20787 0.90272 1.00433 1.02141 1.68659 1.07863 1.26842 1.17683 0.91170 0.86971 0.84241 0.84717 0.82581 0.72297 0.82905 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.60 11.10 21.84 0.24 -39.36 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.98 37.90 29.56 68.60 2.03 39.93 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.47 -24.83 9.14 23.47 0.21 -24.62 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.22 12.04 6.55 40.27 0.26 12.30 16 10 C -0.29 -13.56 9.83 22.88 0.22 -13.34 16 11 C -0.06 -2.36 10.15 22.39 0.23 -2.13 16 12 C -0.29 -11.98 9.47 22.78 0.22 -11.77 16 13 C 0.15 6.90 6.73 42.16 0.28 7.19 16 14 C 0.01 0.61 5.87 -20.07 -0.12 0.49 16 15 C -0.14 -4.58 9.35 22.61 0.21 -4.36 16 16 C 0.15 4.20 6.69 22.46 0.15 4.35 16 17 O -0.49 -10.29 13.50 -92.48 -1.25 -11.54 16 18 C -0.22 -6.32 8.19 22.50 0.18 -6.14 16 19 C 0.11 3.77 6.48 22.46 0.15 3.92 16 20 O -0.32 -10.48 10.37 -92.46 -0.96 -11.44 16 21 C 0.61 15.62 3.42 113.37 0.39 16.01 16 22 F -0.16 -4.02 15.56 44.97 0.70 -3.32 16 23 F -0.13 -3.11 17.53 44.97 0.79 -2.32 16 24 F -0.16 -3.77 15.55 44.97 0.70 -3.07 16 25 C -0.12 -4.87 9.51 22.61 0.21 -4.66 16 26 N -0.50 -26.98 6.91 -178.20 -1.23 -28.21 16 27 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 28 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 29 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.14 4.49 6.17 -2.91 -0.02 4.47 16 31 H 0.16 4.28 6.16 -2.91 -0.02 4.26 16 32 H 0.42 4.16 9.06 -74.05 -0.67 3.49 16 33 H 0.15 3.76 5.07 -2.91 -0.01 3.75 16 34 H 0.14 6.71 7.17 -2.91 -0.02 6.69 16 Total: -1.00 -63.06 314.18 4.63 -58.43 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.54 Total: 21.77 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.08 Total: -20.88 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.99 Total: -67.57 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -2.21 Total: -22.97 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.19 Total: -8.71 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -63.06 4.63 -58.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242986221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.343 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds