Wall clock time and date at job start Tue Mar 31 2020 14:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48502 * 109.47089 * 275.38976 * 3 2 1 5 5 H 1.48500 * 109.47470 * 35.39329 * 3 2 1 6 6 H 1.48499 * 109.47065 * 155.39273 * 3 2 1 7 7 C 1.40051 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99535 * 341.62078 * 7 2 1 9 9 C 1.41521 * 119.99923 * 161.62165 * 7 2 1 10 10 C 1.41139 * 120.99045 * 330.84586 * 9 7 2 11 11 C 1.37741 * 119.07258 * 180.02562 * 10 9 7 12 12 N 1.31914 * 121.15940 * 359.74047 * 11 10 9 13 13 C 1.32795 * 122.20393 * 0.53405 * 12 11 10 14 14 C 1.48372 * 119.60932 * 179.74380 * 13 12 11 15 15 C 1.39322 * 120.06887 * 179.97438 * 14 13 12 16 16 C 1.38537 * 119.92982 * 180.22919 * 15 14 13 17 17 O 1.35906 * 119.96272 * 179.74743 * 16 15 14 18 18 C 1.38727 * 120.06761 * 359.47916 * 16 15 14 19 19 C 1.38681 * 120.14317 * 0.29196 * 18 16 15 20 20 O 1.35907 * 119.96856 * 179.97438 * 19 18 16 21 21 C 1.42901 * 116.99907 * 359.97438 * 20 19 18 22 22 F 1.39903 * 109.46712 * 59.99807 * 21 20 19 23 23 F 1.39895 * 109.47158 * 179.97438 * 21 20 19 24 24 F 1.39893 * 109.47415 * 300.00238 * 21 20 19 25 25 C 1.38587 * 120.06987 * 359.96007 * 19 18 16 26 26 C 1.38887 * 120.77489 * 359.47017 * 13 12 11 27 27 H 0.96994 * 120.00416 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.46242 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.42120 * 179.97438 * 11 10 9 30 30 H 1.08000 * 120.03310 * 0.02562 * 15 14 13 31 31 H 0.96700 * 113.99867 * 269.73019 * 17 16 15 32 32 H 1.08005 * 119.92824 * 180.27315 * 18 16 15 33 33 H 1.07997 * 120.03373 * 180.02562 * 25 19 18 34 34 H 1.07998 * 120.62072 * 180.27879 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3748 2.1122 -1.3939 5 1 1.5003 2.6171 0.8109 6 1 3.5911 1.4100 0.5830 7 6 2.0076 -1.2129 0.0005 8 1 1.5089 -2.1242 0.2959 9 6 3.3687 -1.2442 -0.3859 10 6 3.8833 -0.3104 -1.3106 11 6 5.2142 -0.3775 -1.6593 12 7 6.0103 -1.2926 -1.1407 13 6 5.5764 -2.1975 -0.2710 14 6 6.5211 -3.2045 0.2719 15 6 6.0763 -4.1579 1.1852 16 6 6.9620 -5.0939 1.6939 17 8 6.5299 -6.0210 2.5888 18 6 8.2880 -5.0893 1.2865 19 6 8.7329 -4.1446 0.3739 20 8 10.0329 -4.1430 -0.0224 21 6 10.8844 -5.1422 0.5421 22 9 10.3936 -6.4112 0.2164 23 9 12.1777 -4.9970 0.0288 24 9 10.9153 -4.9971 1.9331 25 6 7.8531 -3.2023 -0.1348 26 6 4.2500 -2.2087 0.1406 27 1 -0.4850 0.8400 0.0004 28 1 3.2425 0.4461 -1.7390 29 1 5.6138 0.3341 -2.3668 30 1 5.0429 -4.1652 1.4988 31 1 6.6069 -5.7426 3.5117 32 1 8.9756 -5.8228 1.6812 33 1 8.2001 -2.4672 -0.8457 34 1 3.9008 -2.9429 0.8514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242986465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:57 Heat of formation + Delta-G solvation = -186.316227 kcal Electronic energy + Delta-G solvation = -26365.798612 eV Core-core repulsion = 21813.673501 eV Total energy + Delta-G solvation = -4552.125111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.61831 -48.34533 -48.20298 -40.45976 -38.94853 -38.39598 -36.21287 -34.17014 -31.87435 -31.51429 -29.78884 -28.66992 -26.28272 -25.97149 -23.63129 -22.88660 -21.65130 -20.99126 -19.65037 -19.32462 -19.22829 -18.13300 -17.35567 -16.55604 -16.09298 -15.87614 -15.67957 -15.36905 -15.02639 -14.86248 -14.67944 -14.62530 -14.54784 -14.44194 -14.27795 -14.19274 -14.11226 -13.52657 -13.16905 -12.99742 -12.94926 -12.09641 -11.85573 -11.71237 -11.48717 -11.10830 -10.94470 -10.76040 -10.73373 -9.97563 -9.55300 -9.20914 -8.50921 -8.44449 -8.32058 -7.65084 -7.20140 -4.85944 0.88140 1.21028 1.34793 2.34316 2.47934 2.66527 2.96568 3.07083 3.15821 3.54970 3.61184 3.78740 3.83846 4.03689 4.43667 4.63344 4.80042 5.06874 5.13975 5.23926 5.42733 5.47875 5.81441 5.96257 6.17679 6.20940 6.26337 6.33867 6.43024 6.67447 6.73553 6.80651 6.95095 7.05392 7.48217 7.55681 7.72754 8.06410 8.27353 8.49981 9.12850 9.80679 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.002970 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.854075 B = 9425.366786 C =10197.064759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.435 4.435 8 H 0.096 0.904 9 C 0.107 3.893 10 C -0.282 4.282 11 C 0.122 3.878 12 N -0.563 5.563 13 C 0.153 3.847 14 C 0.038 3.962 15 C -0.148 4.148 16 C 0.142 3.858 17 O -0.494 6.494 18 C -0.227 4.227 19 C 0.110 3.890 20 O -0.307 6.307 21 C 0.603 3.397 22 F -0.165 7.165 23 F -0.134 7.134 24 F -0.167 7.167 25 C -0.102 4.102 26 C -0.227 4.227 27 H 0.290 0.710 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.393 0.607 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 -6.627 3.920 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.465 4.465 8 H 0.114 0.886 9 C 0.099 3.901 10 C -0.305 4.305 11 C -0.032 4.032 12 N -0.277 5.277 13 C 0.022 3.978 14 C 0.037 3.963 15 C -0.167 4.167 16 C 0.097 3.903 17 O -0.304 6.304 18 C -0.246 4.246 19 C 0.068 3.932 20 O -0.227 6.227 21 C 0.512 3.488 22 F -0.147 7.147 23 F -0.116 7.116 24 F -0.149 7.149 25 C -0.121 4.121 26 C -0.250 4.250 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.249 0.751 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.710 -6.799 3.073 17.392 hybrid contribution -0.484 0.738 0.791 1.185 sum 15.227 -6.061 3.864 16.838 Atomic orbital electron populations 1.69635 1.08232 1.30870 1.32732 1.26219 0.94766 1.02022 0.90560 0.86256 0.81221 0.79378 0.79189 1.19186 1.21399 1.16828 1.19543 0.92708 0.96441 1.37820 0.88583 1.17849 0.93108 0.90187 0.88968 1.21994 0.97193 1.06009 1.05274 1.21898 0.90306 0.94664 0.96340 1.67308 1.38562 1.07075 1.14792 1.18975 0.90541 0.93334 0.94985 1.18363 0.91441 0.93125 0.93406 1.21652 1.01238 0.94410 0.99439 1.17809 0.89989 0.89172 0.93321 1.84818 1.85876 1.40702 1.19005 1.21629 0.97818 1.01694 1.03497 1.18350 0.80084 0.97514 0.97212 1.86444 1.20334 1.50482 1.65394 1.19366 0.77866 0.76668 0.74899 1.93306 1.87651 1.41460 1.92327 1.93294 1.35390 1.95542 1.87337 1.93288 1.96244 1.95220 1.30139 1.20587 0.91122 0.98573 1.01862 1.21918 0.92776 1.04917 1.05407 0.89931 0.87219 0.85191 0.83803 0.75126 0.84688 0.82968 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.64 13.92 55.55 0.77 -18.87 16 2 C 0.09 2.10 5.42 -17.34 -0.09 2.01 16 3 Si 0.91 19.34 24.54 -169.99 -4.17 15.17 16 4 H -0.27 -5.42 6.71 56.52 0.38 -5.04 16 5 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.25 -5.38 6.85 56.52 0.39 -4.99 16 7 C -0.44 -10.95 9.63 -37.65 -0.36 -11.31 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.11 2.54 5.13 -106.56 -0.55 1.99 16 10 C -0.28 -6.38 7.29 -38.66 -0.28 -6.66 16 11 C 0.12 2.56 11.15 -17.70 -0.20 2.37 16 12 N -0.56 -11.98 9.39 -9.94 -0.09 -12.07 16 13 C 0.15 3.17 6.73 -83.04 -0.56 2.61 16 14 C 0.04 0.67 5.87 -104.94 -0.62 0.05 16 15 C -0.15 -2.30 9.35 -39.07 -0.37 -2.67 16 16 C 0.14 1.97 6.69 -39.29 -0.26 1.70 16 17 O -0.49 -5.83 13.50 -19.44 -0.26 -6.09 16 18 C -0.23 -3.09 8.19 -39.24 -0.32 -3.41 16 19 C 0.11 1.61 6.48 -39.29 -0.25 1.36 16 20 O -0.31 -4.12 10.37 -19.45 -0.20 -4.32 16 21 C 0.60 6.83 3.42 101.05 0.35 7.17 16 22 F -0.17 -1.89 15.55 2.25 0.04 -1.85 16 23 F -0.13 -1.41 17.53 2.25 0.04 -1.37 16 24 F -0.17 -1.82 15.56 2.25 0.04 -1.78 16 25 C -0.10 -1.67 9.51 -39.07 -0.37 -2.04 16 26 C -0.23 -4.96 9.25 -38.35 -0.35 -5.31 16 27 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 28 H 0.11 2.42 4.76 -52.48 -0.25 2.17 16 29 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.14 2.16 6.17 -52.49 -0.32 1.83 16 31 H 0.39 2.64 9.06 45.56 0.41 3.05 16 32 H 0.14 1.64 5.07 -52.48 -0.27 1.38 16 33 H 0.15 2.52 7.52 -52.49 -0.39 2.13 16 34 H 0.11 2.28 6.18 -52.49 -0.32 1.95 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -26.98 308.31 -4.60 -31.58 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -1.16 Total: 7.11 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -4.24 Total: -12.14 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.68 Total: -30.94 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.46 Total: -10.41 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.17 Total: 15.17 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.98 -4.60 -31.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242986465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.734 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds