Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86795 * 119.99933 * 2 1 4 4 H 1.48498 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47326 * 300.00404 * 3 2 1 6 6 H 1.48501 * 109.47006 * 60.00546 * 3 2 1 7 7 C 1.40034 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.41429 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.40472 * 119.77696 * 180.02562 * 9 7 2 11 11 C 1.39303 * 118.83613 * 180.02562 * 10 9 7 12 12 C 1.48402 * 120.82160 * 179.97438 * 11 10 9 13 13 C 1.39304 * 120.06795 * 0.02562 * 12 11 10 14 14 C 1.38542 * 119.93258 * 180.02562 * 13 12 11 15 15 O 1.35894 * 119.96830 * 179.97438 * 14 13 12 16 16 C 1.38731 * 120.06476 * 359.97091 * 14 13 12 17 17 C 1.38687 * 120.13946 * 0.02562 * 16 14 13 18 18 O 1.35905 * 119.96932 * 180.02562 * 17 16 14 19 19 C 1.42901 * 116.99604 * 0.02562 * 18 17 16 20 20 F 1.39904 * 109.47113 * 60.00000 * 19 18 17 21 21 F 1.39901 * 109.46966 * 180.02562 * 19 18 17 22 22 F 1.39900 * 109.47228 * 299.99525 * 19 18 17 23 23 C 1.38587 * 120.06812 * 0.29406 * 17 16 14 24 24 C 1.40032 * 118.35960 * 0.26911 * 11 10 9 25 25 C 1.38515 * 119.41858 * 359.43611 * 24 11 10 26 26 N 1.31478 * 121.14812 * 0.58289 * 25 24 11 27 27 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.58115 * 359.97438 * 10 9 7 29 29 H 1.07998 * 120.03423 * 359.97319 * 13 12 11 30 30 H 0.96698 * 114.00002 * 269.97826 * 15 14 13 31 31 H 1.08006 * 119.93154 * 180.02562 * 16 14 13 32 32 H 1.07997 * 120.03319 * 179.70786 * 23 17 16 33 33 H 1.07991 * 120.29527 * 179.73137 * 24 11 10 34 34 H 1.08000 * 119.42560 * 180.29593 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3463 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3963 1.2126 7 6 2.0076 -1.2128 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3004 -2.4376 -0.0005 10 6 2.0075 -3.6513 -0.0005 11 6 1.2913 -4.8461 -0.0011 12 6 1.9934 -6.1536 -0.0017 13 6 3.3858 -6.1980 -0.0012 14 6 4.0384 -7.4201 -0.0023 15 8 5.3966 -7.4644 -0.0023 16 6 3.3066 -8.5988 -0.0033 17 6 1.9204 -8.5578 -0.0037 18 8 1.2070 -9.7146 -0.0042 19 6 1.9503 -10.9350 -0.0036 20 9 2.7553 -10.9903 1.1393 21 9 1.0663 -12.0194 -0.0048 22 9 2.7568 -10.9904 -1.1453 23 6 1.2618 -7.3384 -0.0093 24 6 -0.1076 -4.7831 -0.0074 25 6 -0.7330 -3.5472 -0.0010 26 7 -0.0360 -2.4323 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 3.0875 -3.6581 -0.0010 29 1 3.9559 -5.2808 -0.0008 30 1 5.7897 -7.4767 -0.8857 31 1 3.8176 -9.5503 -0.0037 32 1 0.1823 -7.3072 -0.0144 33 1 -0.6938 -5.6901 -0.0124 34 1 -1.8119 -3.4985 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242990384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -195.290806 kcal Electronic energy + Delta-G solvation = -26259.964203 eV Core-core repulsion = 21707.449926 eV Total energy + Delta-G solvation = -4552.514278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.52205 -49.23024 -49.11144 -41.62315 -40.17590 -39.52471 -37.48172 -35.48726 -33.57503 -32.08724 -30.95024 -30.19855 -27.69295 -27.10261 -24.83031 -24.24811 -22.82883 -22.50269 -20.79768 -20.24198 -20.21933 -19.29496 -18.61753 -17.91829 -17.31989 -17.19207 -16.69270 -16.37181 -16.23145 -15.96098 -15.84159 -15.66548 -15.53291 -15.52114 -15.41868 -15.22774 -15.19061 -14.53735 -14.39518 -14.29155 -13.92542 -13.47769 -13.18237 -13.07853 -12.80308 -12.66724 -12.59926 -12.04039 -11.80572 -11.63642 -11.30089 -10.79873 -9.69090 -9.61357 -9.52936 -9.28027 -8.30471 -6.53137 -0.35290 0.02944 0.35129 0.88272 1.21552 1.42204 1.53224 1.57281 1.69659 2.23193 2.44412 2.66175 2.86861 2.91644 3.01562 3.49972 3.69968 3.89483 3.93920 3.95720 4.13389 4.23992 4.43045 4.64315 4.80595 4.85129 4.90063 5.04921 5.13463 5.19621 5.31220 5.45439 5.58535 5.67841 5.84690 6.09918 6.26975 6.71098 6.72783 6.93042 8.17152 8.44609 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.002762 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.089789 B =10135.403722 C =11054.441442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.091 0.909 9 C 0.222 3.778 10 C -0.263 4.263 11 C -0.005 4.005 12 C 0.017 3.983 13 C -0.159 4.159 14 C 0.157 3.843 15 O -0.497 6.497 16 C -0.224 4.224 17 C 0.121 3.879 18 O -0.312 6.312 19 C 0.608 3.392 20 F -0.164 7.164 21 F -0.127 7.127 22 F -0.162 7.162 23 C -0.128 4.128 24 C -0.292 4.292 25 C 0.106 3.894 26 N -0.519 5.519 27 H 0.279 0.721 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.417 0.583 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -17.574 -1.809 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.286 4.286 11 C -0.011 4.011 12 C 0.016 3.984 13 C -0.178 4.178 14 C 0.112 3.888 15 O -0.311 6.311 16 C -0.243 4.243 17 C 0.078 3.922 18 O -0.232 6.232 19 C 0.518 3.482 20 F -0.146 7.146 21 F -0.108 7.108 22 F -0.144 7.144 23 C -0.147 4.147 24 C -0.315 4.315 25 C -0.058 4.058 26 N -0.233 5.233 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.278 0.722 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.294 -16.687 -1.219 17.549 hybrid contribution 0.704 -0.328 -0.447 0.896 sum 5.998 -17.015 -1.666 18.118 Atomic orbital electron populations 1.70230 1.08899 1.29098 1.29558 1.26991 0.95723 1.04577 0.92509 0.85093 0.79484 0.76006 0.78743 1.17593 1.19147 1.19230 1.20040 0.94870 0.90340 1.44548 0.89095 1.18987 0.88799 0.93110 0.89343 1.22007 0.99404 0.92496 1.14656 1.18743 0.93507 0.90957 0.97910 1.18458 0.92520 0.91388 0.95996 1.21704 0.93818 0.98812 1.03489 1.17793 0.83725 0.90348 0.96903 1.84758 1.14390 1.96137 1.35861 1.21809 0.91999 1.00828 1.09616 1.18208 0.89908 0.83318 1.00721 1.86412 1.35551 1.12093 1.89191 1.19244 0.74853 0.79324 0.74797 1.93315 1.73734 1.96113 1.51417 1.93321 1.69344 1.51871 1.96297 1.93305 1.73605 1.96112 1.51351 1.20517 1.01679 0.87656 1.04823 1.21708 0.93682 0.98706 1.17397 1.22937 1.00015 0.88788 0.94058 1.68664 1.07896 1.28747 1.17981 0.91024 0.86556 0.84342 0.72240 0.82946 0.83113 0.84979 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.46 11.46 21.84 0.25 -40.21 16 2 C 0.02 1.19 5.50 85.29 0.47 1.66 16 3 Si 0.99 37.48 29.56 68.60 2.03 39.51 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.47 -24.86 9.14 23.49 0.21 -24.65 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.22 12.08 6.55 40.20 0.26 12.35 16 10 C -0.26 -12.42 9.22 23.07 0.21 -12.20 16 11 C 0.00 -0.21 5.91 -19.88 -0.12 -0.32 16 12 C 0.02 0.57 5.87 -20.07 -0.12 0.45 16 13 C -0.16 -4.87 9.38 22.60 0.21 -4.66 16 14 C 0.16 4.03 6.69 22.46 0.15 4.18 16 15 O -0.50 -10.42 13.50 -92.35 -1.25 -11.66 16 16 C -0.22 -5.43 8.19 22.50 0.18 -5.25 16 17 C 0.12 3.17 6.48 22.46 0.15 3.31 16 18 O -0.31 -7.37 10.37 -92.48 -0.96 -8.33 16 19 C 0.61 11.88 3.42 113.37 0.39 12.27 16 20 F -0.16 -3.24 15.56 44.97 0.70 -2.54 16 21 F -0.13 -2.30 17.53 44.97 0.79 -1.51 16 22 F -0.16 -3.00 15.55 44.97 0.70 -2.30 16 23 C -0.13 -3.79 9.38 22.60 0.21 -3.58 16 24 C -0.29 -12.14 9.51 22.77 0.22 -11.93 16 25 C 0.11 4.96 11.17 84.81 0.95 5.91 16 26 N -0.52 -28.60 7.85 -189.36 -1.49 -30.09 16 27 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 28 H 0.12 5.01 6.33 -2.91 -0.02 4.99 16 29 H 0.14 4.26 6.28 -2.91 -0.02 4.24 16 30 H 0.42 4.33 9.06 -74.06 -0.67 3.65 16 31 H 0.15 3.16 5.07 -2.91 -0.01 3.15 16 32 H 0.15 4.16 6.28 -2.91 -0.02 4.14 16 33 H 0.13 4.52 6.32 -2.92 -0.02 4.50 16 34 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -63.35 312.65 4.70 -58.65 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.55 Total: 20.95 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.38 Total: -22.46 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.24 Total: -70.30 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -2.21 Total: -20.00 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 2.19 Total: -6.35 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -63.35 4.70 -58.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242990384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.645 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds