Wall clock time and date at job start Tue Mar 31 2020 14:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 120.00242 * 2 1 4 4 H 1.48495 * 109.46851 * 239.99588 * 3 2 1 5 5 H 1.48497 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46740 * 120.00137 * 3 2 1 7 7 C 1.38653 * 119.99343 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99596 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00642 * 0.02562 * 7 2 1 10 10 C 1.35648 * 117.00283 * 185.06678 * 9 7 2 11 11 C 1.38764 * 120.13702 * 354.40113 * 10 9 7 12 12 C 1.38098 * 120.05149 * 180.02562 * 11 10 9 13 13 C 1.38468 * 120.33400 * 0.02562 * 12 11 10 14 14 C 1.37989 * 120.27481 * 359.74170 * 13 12 11 15 15 C 1.39339 * 119.94190 * 0.51236 * 14 13 12 16 16 C 1.48196 * 120.16566 * 179.77173 * 15 14 13 17 17 C 1.39444 * 119.67188 * 359.71712 * 16 15 14 18 18 C 1.38266 * 119.12761 * 180.02562 * 17 16 15 19 19 C 1.39276 * 118.47408 * 0.25669 * 18 17 16 20 20 O 1.35896 * 120.36656 * 179.74479 * 19 18 17 21 21 C 1.42901 * 116.99841 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47318 * 60.00258 * 21 20 19 23 23 F 1.39900 * 109.46683 * 180.02562 * 21 20 19 24 24 F 1.39908 * 109.46939 * 300.00047 * 21 20 19 25 25 C 1.38781 * 119.26395 * 359.52470 * 19 18 17 26 26 N 1.31721 * 120.81849 * 0.48083 * 25 19 18 27 27 H 0.97005 * 119.99564 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.97553 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.83887 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.86036 * 179.97438 * 13 12 11 31 31 H 1.07999 * 120.03423 * 180.28201 * 14 13 12 32 32 H 1.08003 * 120.43745 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.76022 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.58989 * 180.20936 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6962 -1.2124 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0016 10 6 2.0692 -3.5038 0.1047 11 6 3.4554 -3.4405 0.0913 12 6 4.2015 -4.5976 0.1991 13 6 3.5737 -5.8258 0.3204 14 6 2.1962 -5.9040 0.3400 15 6 1.4320 -4.7444 0.2267 16 6 -0.0477 -4.8231 0.2420 17 6 -0.6717 -6.0642 0.3645 18 6 -2.0530 -6.1247 0.3771 19 6 -2.7708 -4.9368 0.2607 20 8 -4.1296 -4.9521 0.2634 21 6 -4.7929 -3.6924 0.1394 22 9 -4.4262 -3.0892 -1.0684 23 9 -6.1776 -3.8905 0.1607 24 9 -4.4241 -2.8644 1.2051 25 6 -2.0828 -3.7369 0.1467 26 7 -0.7659 -3.7122 0.1381 27 1 -0.4850 0.8401 -0.0004 28 1 3.9511 -2.4858 -0.0042 29 1 5.2801 -4.5444 0.1879 30 1 4.1647 -6.7259 0.4037 31 1 1.7106 -6.8636 0.4393 32 1 -0.0838 -6.9663 0.4476 33 1 -2.5636 -7.0718 0.4703 34 1 -2.6342 -2.8123 0.0597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243579727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:10 Heat of formation + Delta-G solvation = -144.495500 kcal Electronic energy + Delta-G solvation = -27111.796916 eV Core-core repulsion = 22561.485288 eV Total energy + Delta-G solvation = -4550.311628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.33216 -48.09356 -47.89567 -40.39267 -39.10051 -37.88315 -36.35104 -32.41418 -32.09521 -31.84093 -29.14316 -28.33571 -25.96909 -25.42601 -23.57525 -23.31633 -21.38577 -20.84193 -19.63804 -19.02605 -18.98637 -17.99984 -17.35949 -16.55772 -15.97287 -15.62280 -15.18890 -14.87742 -14.74816 -14.45030 -14.41010 -14.33806 -14.31168 -14.06018 -13.96100 -13.73585 -13.66585 -13.45171 -13.17359 -12.70598 -12.59188 -12.48685 -11.94173 -11.70263 -11.37037 -10.89973 -10.86106 -10.73553 -10.48633 -9.53152 -9.46025 -9.09515 -8.84565 -8.72981 -7.83101 -7.08192 -6.46443 -4.01471 1.01756 1.56485 1.57479 2.28203 2.37322 2.96639 3.11447 3.12920 3.14868 3.86374 3.93110 3.98747 4.18431 4.67583 4.69849 4.81459 4.95523 5.08253 5.10913 5.20308 5.43943 5.56488 5.72099 5.77551 5.98039 6.05247 6.17303 6.31704 6.42818 6.61886 6.72316 6.95888 7.02661 7.18671 7.29954 7.33374 7.73695 7.93713 8.55337 8.95490 9.68918 10.67425 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.005036 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.513657 B = 5559.022677 C = 8033.883995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.046 3.954 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.398 4.398 8 H 0.091 0.909 9 O -0.117 6.117 10 C 0.175 3.825 11 C -0.238 4.238 12 C -0.058 4.058 13 C -0.226 4.226 14 C -0.047 4.047 15 C -0.150 4.150 16 C 0.184 3.816 17 C -0.156 4.156 18 C -0.077 4.077 19 C 0.006 3.994 20 O -0.311 6.311 21 C 0.601 3.399 22 F -0.163 7.163 23 F -0.137 7.137 24 F -0.162 7.162 25 C 0.067 3.933 26 N -0.393 5.393 27 H 0.270 0.730 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 -9.549 0.662 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.475 4.475 8 H 0.108 0.892 9 O -0.014 6.014 10 C 0.116 3.884 11 C -0.257 4.257 12 C -0.077 4.077 13 C -0.245 4.245 14 C -0.066 4.066 15 C -0.153 4.153 16 C 0.049 3.951 17 C -0.176 4.176 18 C -0.103 4.103 19 C -0.038 4.038 20 O -0.230 6.230 21 C 0.511 3.489 22 F -0.145 7.145 23 F -0.119 7.119 24 F -0.144 7.144 25 C -0.094 4.094 26 N -0.102 5.102 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.875 -8.592 0.567 9.895 hybrid contribution -0.110 0.380 0.048 0.399 sum -4.985 -8.212 0.615 9.626 Atomic orbital electron populations 1.70099 1.05824 1.27600 1.42936 1.25288 0.95795 0.98719 0.96328 0.85844 0.78842 0.79929 0.79200 1.19489 1.20244 1.19494 1.21439 0.91860 0.81404 1.52752 0.89185 1.84236 1.33010 1.10631 1.73564 1.19338 0.89862 0.87748 0.91476 1.21155 0.93566 0.99209 1.11780 1.20866 0.98580 0.92386 0.95874 1.20454 0.93939 0.97087 1.12990 1.20688 0.93590 0.95720 0.96579 1.17485 0.88886 0.91863 1.17065 1.19945 0.93614 0.87908 0.93605 1.21907 0.93226 0.99267 1.03226 1.20613 0.93091 0.95915 1.00636 1.19891 0.78941 0.97385 1.07605 1.86301 1.20169 1.27402 1.89151 1.19400 0.76740 0.77716 0.75074 1.93328 1.91295 1.83708 1.46131 1.93274 1.27296 1.94946 1.96369 1.93334 1.91233 1.72786 1.57075 1.23389 0.91966 0.95434 0.98607 1.68175 1.04782 1.29075 1.08166 0.92011 0.85291 0.87348 0.87300 0.86631 0.83878 0.84063 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.49 13.67 55.48 0.76 -22.73 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.40 -10.79 9.49 30.89 0.29 -10.49 16 8 H 0.09 2.25 5.21 -52.48 -0.27 1.97 16 9 O -0.12 -3.21 7.59 0.41 0.00 -3.21 16 10 C 0.17 4.16 6.65 -38.73 -0.26 3.91 16 11 C -0.24 -5.01 9.16 -39.44 -0.36 -5.37 16 12 C -0.06 -1.02 10.03 -39.55 -0.40 -1.42 16 13 C -0.23 -3.67 10.03 -39.59 -0.40 -4.07 16 14 C -0.05 -0.79 9.41 -39.26 -0.37 -1.16 16 15 C -0.15 -3.15 5.89 -104.74 -0.62 -3.77 16 16 C 0.18 3.77 6.73 -82.95 -0.56 3.21 16 17 C -0.16 -2.45 9.46 -39.12 -0.37 -2.82 16 18 C -0.08 -1.12 10.11 -39.19 -0.40 -1.52 16 19 C 0.01 0.10 6.51 -38.99 -0.25 -0.15 16 20 O -0.31 -4.68 10.38 -19.41 -0.20 -4.88 16 21 C 0.60 8.64 3.42 101.05 0.35 8.98 16 22 F -0.16 -2.49 15.59 2.25 0.04 -2.46 16 23 F -0.14 -1.73 17.53 2.25 0.04 -1.69 16 24 F -0.16 -2.50 15.56 2.25 0.04 -2.47 16 25 C 0.07 1.35 9.44 -17.40 -0.16 1.19 16 26 N -0.39 -9.11 8.14 -9.67 -0.08 -9.19 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.54 6.18 -52.49 -0.32 1.21 16 32 H 0.14 1.73 6.19 -52.48 -0.32 1.41 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.16 3.19 5.10 -52.49 -0.27 2.92 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -29.99 311.96 -5.22 -35.21 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.89 Total: 4.10 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.60 Total: -12.35 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.68 Total: -31.92 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.20 Total: -8.09 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.99 -5.22 -35.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.290 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds