Wall clock time and date at job start Tue Mar 31 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 120.00242 * 2 1 4 4 H 1.48495 * 109.46851 * 239.99588 * 3 2 1 5 5 H 1.48497 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46740 * 120.00137 * 3 2 1 7 7 C 1.38653 * 119.99343 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99596 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00642 * 0.02562 * 7 2 1 10 10 C 1.35648 * 117.00283 * 185.06678 * 9 7 2 11 11 C 1.38764 * 120.13702 * 354.40113 * 10 9 7 12 12 C 1.38098 * 120.05149 * 180.02562 * 11 10 9 13 13 C 1.38468 * 120.33400 * 0.02562 * 12 11 10 14 14 C 1.37989 * 120.27481 * 359.74170 * 13 12 11 15 15 C 1.39339 * 119.94190 * 0.51236 * 14 13 12 16 16 C 1.48196 * 120.16566 * 179.77173 * 15 14 13 17 17 C 1.39444 * 119.67188 * 359.71712 * 16 15 14 18 18 C 1.38266 * 119.12761 * 180.02562 * 17 16 15 19 19 C 1.39276 * 118.47408 * 0.25669 * 18 17 16 20 20 O 1.35896 * 120.36656 * 179.74479 * 19 18 17 21 21 C 1.42901 * 116.99841 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47318 * 60.00258 * 21 20 19 23 23 F 1.39900 * 109.46683 * 180.02562 * 21 20 19 24 24 F 1.39908 * 109.46939 * 300.00047 * 21 20 19 25 25 C 1.38781 * 119.26395 * 359.52470 * 19 18 17 26 26 N 1.31721 * 120.81849 * 0.48083 * 25 19 18 27 27 H 0.97005 * 119.99564 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.97553 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.83887 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.86036 * 179.97438 * 13 12 11 31 31 H 1.07999 * 120.03423 * 180.28201 * 14 13 12 32 32 H 1.08003 * 120.43745 * 359.97438 * 17 16 15 33 33 H 1.08001 * 120.76022 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.58989 * 180.20936 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6962 -1.2124 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0016 10 6 2.0692 -3.5038 0.1047 11 6 3.4554 -3.4405 0.0913 12 6 4.2015 -4.5976 0.1991 13 6 3.5737 -5.8258 0.3204 14 6 2.1962 -5.9040 0.3400 15 6 1.4320 -4.7444 0.2267 16 6 -0.0477 -4.8231 0.2420 17 6 -0.6717 -6.0642 0.3645 18 6 -2.0530 -6.1247 0.3771 19 6 -2.7708 -4.9368 0.2607 20 8 -4.1296 -4.9521 0.2634 21 6 -4.7929 -3.6924 0.1394 22 9 -4.4262 -3.0892 -1.0684 23 9 -6.1776 -3.8905 0.1607 24 9 -4.4241 -2.8644 1.2051 25 6 -2.0828 -3.7369 0.1467 26 7 -0.7659 -3.7122 0.1381 27 1 -0.4850 0.8401 -0.0004 28 1 3.9511 -2.4858 -0.0042 29 1 5.2801 -4.5444 0.1879 30 1 4.1647 -6.7259 0.4037 31 1 1.7106 -6.8636 0.4393 32 1 -0.0838 -6.9663 0.4476 33 1 -2.5636 -7.0718 0.4703 34 1 -2.6342 -2.8123 0.0597 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243579727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:09 Heat of formation + Delta-G solvation = -163.342625 kcal Electronic energy + Delta-G solvation = -27112.614189 eV Core-core repulsion = 22561.485288 eV Total energy + Delta-G solvation = -4551.128901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.53353 -49.24684 -49.14211 -41.77716 -40.62743 -39.29509 -37.93533 -34.24816 -33.49820 -33.28412 -30.63818 -29.80979 -27.28885 -27.24516 -25.00305 -24.67498 -22.90817 -22.29013 -20.92832 -20.24143 -20.20733 -19.71548 -18.96592 -17.86928 -17.47964 -17.03448 -16.45984 -16.40788 -16.00577 -15.90659 -15.79549 -15.72826 -15.54384 -15.43866 -15.30388 -15.25283 -15.05144 -14.78268 -14.49073 -14.21546 -14.12868 -13.87974 -13.48186 -13.32002 -12.97158 -12.48177 -12.38401 -12.23297 -12.07562 -11.19100 -10.84933 -10.74330 -10.49852 -10.15429 -9.29676 -8.67566 -8.36560 -6.01800 -0.38101 0.25389 0.33687 0.78778 0.90316 1.34333 1.45258 1.49138 1.74845 2.19405 2.62448 2.67612 2.87046 3.01121 3.29569 3.35559 3.45579 3.59802 3.65277 3.85063 4.14164 4.27799 4.30614 4.48391 4.61378 4.69765 4.80826 4.94278 5.08752 5.13196 5.19316 5.29109 5.60678 5.70322 5.78323 5.81041 6.06599 6.28214 7.04474 7.15342 7.92084 8.82042 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.005036 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.513657 B = 5559.022677 C = 8033.883995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.014 4.014 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.133 3.867 11 C -0.262 4.262 12 C -0.057 4.057 13 C -0.200 4.200 14 C -0.043 4.043 15 C -0.162 4.162 16 C 0.147 3.853 17 C -0.129 4.129 18 C -0.063 4.063 19 C 0.020 3.980 20 O -0.300 6.300 21 C 0.605 3.395 22 F -0.170 7.170 23 F -0.122 7.122 24 F -0.171 7.171 25 C 0.035 3.965 26 N -0.449 5.449 27 H 0.267 0.733 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.194 0.806 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -14.112 1.124 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.214 4.214 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.500 4.500 8 H 0.113 0.887 9 O -0.071 6.071 10 C 0.079 3.921 11 C -0.281 4.281 12 C -0.075 4.075 13 C -0.218 4.218 14 C -0.061 4.061 15 C -0.164 4.164 16 C 0.011 3.989 17 C -0.148 4.148 18 C -0.088 4.088 19 C -0.025 4.025 20 O -0.219 6.219 21 C 0.514 3.486 22 F -0.152 7.152 23 F -0.104 7.104 24 F -0.153 7.153 25 C -0.125 4.125 26 N -0.159 5.159 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.210 0.790 33 H 0.211 0.789 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.660 -13.210 1.030 13.746 hybrid contribution -0.445 1.318 -0.065 1.393 sum -4.105 -11.892 0.965 12.617 Atomic orbital electron populations 1.70275 1.07619 1.27990 1.46845 1.26418 0.96716 1.02206 0.96057 0.84789 0.77495 0.75126 0.79651 1.18441 1.19910 1.18510 1.21832 0.92321 0.82417 1.53389 0.88724 1.84249 1.33909 1.11310 1.77667 1.20116 0.91338 0.88267 0.92426 1.21275 0.93020 1.00447 1.13397 1.21317 1.00327 0.91654 0.94222 1.21120 0.94135 0.98083 1.08486 1.21261 0.93975 0.96126 0.94764 1.18115 0.90070 0.92144 1.16076 1.20285 0.93592 0.89254 0.95723 1.22338 0.93949 0.98703 0.99799 1.21212 0.92711 0.96730 0.98197 1.19996 0.79501 0.97175 1.05846 1.86308 1.19236 1.27464 1.88872 1.19348 0.77180 0.77451 0.74587 1.93317 1.91474 1.83872 1.46567 1.93309 1.25960 1.94812 1.96272 1.93322 1.91418 1.73084 1.57435 1.23166 0.91620 0.96422 1.01271 1.67996 1.06282 1.31867 1.09707 0.92436 0.86685 0.83808 0.82344 0.81653 0.78994 0.78878 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.02 13.67 21.61 0.30 -54.72 16 2 C -0.01 -0.79 5.49 84.83 0.47 -0.33 16 3 Si 1.01 43.81 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.42 -24.86 9.49 67.92 0.64 -24.21 16 8 H 0.10 5.14 5.21 -2.91 -0.02 5.12 16 9 O -0.17 -10.13 7.59 -21.45 -0.16 -10.29 16 10 C 0.13 6.63 6.65 22.82 0.15 6.78 16 11 C -0.26 -11.27 9.16 22.36 0.20 -11.07 16 12 C -0.06 -1.82 10.03 22.29 0.22 -1.60 16 13 C -0.20 -5.40 10.03 22.27 0.22 -5.18 16 14 C -0.04 -1.25 9.41 22.48 0.21 -1.04 16 15 C -0.16 -6.66 5.89 -19.94 -0.12 -6.78 16 16 C 0.15 5.96 6.73 41.95 0.28 6.24 16 17 C -0.13 -3.49 9.46 22.57 0.21 -3.28 16 18 C -0.06 -1.58 10.11 22.53 0.23 -1.35 16 19 C 0.02 0.64 6.51 22.65 0.15 0.78 16 20 O -0.30 -8.58 10.38 -92.38 -0.96 -9.54 16 21 C 0.60 17.49 3.42 113.37 0.39 17.88 16 22 F -0.17 -5.45 15.59 44.97 0.70 -4.75 16 23 F -0.12 -2.98 17.53 44.97 0.79 -2.19 16 24 F -0.17 -5.50 15.56 44.97 0.70 -4.80 16 25 C 0.03 1.48 9.44 84.84 0.80 2.28 16 26 N -0.45 -21.99 8.14 -184.49 -1.50 -23.49 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 31 H 0.17 3.12 6.18 -2.91 -0.02 3.10 16 32 H 0.19 3.21 6.19 -2.91 -0.02 3.19 16 33 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.14 6.12 5.10 -2.91 -0.01 6.10 16 Total: -1.00 -76.40 311.96 7.15 -69.25 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.20 Total: 15.58 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.07 Total: -20.87 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.21 Total: -78.21 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.12 Total: -19.83 kcal Atomic # 9 Polarization: -13.94 SS G_CDS: 2.19 Total: -11.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.40 7.15 -69.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.094 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds