Wall clock time and date at job start Tue Mar 31 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48499 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47299 * 300.00173 * 3 2 1 6 6 H 1.48501 * 109.46896 * 60.00300 * 3 2 1 7 7 C 1.38660 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.35645 * 116.99833 * 175.02517 * 9 7 2 11 11 C 1.38773 * 120.13411 * 353.25304 * 10 9 7 12 12 C 1.38096 * 120.04735 * 179.72730 * 11 10 9 13 13 C 1.38459 * 120.33590 * 0.02562 * 12 11 10 14 14 C 1.37983 * 120.28013 * 359.97438 * 13 12 11 15 15 C 1.39337 * 119.93926 * 0.04862 * 14 13 12 16 16 C 1.48200 * 120.16564 * 179.97438 * 15 14 13 17 17 C 1.39294 * 119.70062 * 359.67730 * 16 15 14 18 18 C 1.38518 * 119.18999 * 179.77147 * 17 16 15 19 19 C 1.38565 * 118.58321 * 0.49364 * 18 17 16 20 20 C 1.38937 * 119.32944 * 359.75094 * 19 18 17 21 21 O 1.35679 * 119.61480 * 179.97438 * 20 19 18 22 22 C 1.42905 * 116.99974 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.47045 * 59.99681 * 22 21 20 24 24 F 1.39894 * 109.47133 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.46928 * 299.99952 * 22 21 20 26 26 N 1.32159 * 120.77156 * 359.97438 * 20 19 18 27 27 H 0.96997 * 119.99518 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.98187 * 359.71102 * 11 10 9 29 29 H 1.08002 * 119.83047 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.86551 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.03284 * 180.02562 * 14 13 12 32 32 H 1.07998 * 120.40374 * 0.02562 * 17 16 15 33 33 H 1.07994 * 120.71125 * 180.22325 * 18 17 16 34 34 H 1.07997 * 120.33410 * 179.72734 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5037 -0.1059 11 6 3.4340 -3.4305 -0.3476 12 6 4.1813 -4.5873 -0.4489 13 6 3.5763 -5.8251 -0.3110 14 6 2.2205 -5.9138 -0.0704 15 6 1.4553 -4.7540 0.0335 16 6 -0.0014 -4.8434 0.2912 17 6 -0.6036 -6.0926 0.4225 18 6 -1.9650 -6.1638 0.6681 19 6 -2.6839 -4.9832 0.7644 20 6 -2.0227 -3.7699 0.6182 21 8 -2.7211 -2.6104 0.7110 22 6 -1.9857 -1.3956 0.5512 23 9 -1.3887 -1.3748 -0.7139 24 9 -2.8535 -0.3054 0.6748 25 9 -0.9948 -1.3174 1.5358 26 7 -0.7216 -3.7322 0.3900 27 1 -0.4849 0.8401 0.0004 28 1 3.9119 -2.4682 -0.4569 29 1 5.2430 -4.5263 -0.6376 30 1 4.1681 -6.7249 -0.3912 31 1 1.7527 -6.8813 0.0369 32 1 -0.0155 -6.9945 0.3380 33 1 -2.4564 -7.1192 0.7777 34 1 -3.7474 -5.0058 0.9508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:13 Heat of formation + Delta-G solvation = -111.292576 kcal Electronic energy + Delta-G solvation = -28996.115606 eV Core-core repulsion = 24447.243765 eV Total energy + Delta-G solvation = -4548.871841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.61892 -46.48602 -45.93137 -40.17994 -38.93059 -37.34877 -36.31863 -32.56128 -32.16465 -31.47382 -29.09593 -28.47023 -25.52019 -24.88491 -23.62241 -22.60009 -21.11148 -20.82292 -18.92404 -18.03268 -17.76177 -17.42992 -17.02321 -15.99022 -15.64949 -15.26898 -14.79155 -14.67309 -14.40123 -14.26536 -13.72811 -13.64991 -13.41569 -13.23917 -13.11172 -12.72559 -12.54381 -12.49653 -12.28846 -12.19182 -12.04714 -11.99885 -11.62872 -11.39306 -11.29098 -10.94437 -10.83669 -10.68699 -10.41420 -9.63708 -9.50029 -8.85826 -8.79551 -8.73514 -7.84014 -7.09876 -6.39540 -4.00729 1.13401 1.68383 2.32622 2.41248 2.49121 3.12432 3.13289 3.18430 3.93421 4.15038 4.36140 4.66617 4.78359 5.03217 5.11997 5.16562 5.33095 5.40595 5.47238 5.52460 5.67260 5.71845 5.74591 5.91808 6.08204 6.13740 6.35810 6.46100 6.62207 6.63119 6.79461 7.03016 7.10838 7.29807 7.32718 7.43600 7.73914 7.93201 8.44389 8.97004 9.67943 10.61501 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.008702 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.585267 B = 3217.002865 C = 5746.889677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.051 3.949 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.114 6.114 10 C 0.177 3.823 11 C -0.238 4.238 12 C -0.057 4.057 13 C -0.227 4.227 14 C -0.042 4.042 15 C -0.156 4.156 16 C 0.242 3.758 17 C -0.214 4.214 18 C -0.044 4.044 19 C -0.207 4.207 20 C 0.326 3.674 21 O -0.342 6.342 22 C 0.634 3.366 23 F -0.120 7.120 24 F -0.168 7.168 25 F -0.137 7.137 26 N -0.480 5.480 27 H 0.264 0.736 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -8.307 0.805 8.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.155 4.155 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.107 0.893 9 O -0.012 6.012 10 C 0.118 3.882 11 C -0.257 4.257 12 C -0.076 4.076 13 C -0.246 4.246 14 C -0.061 4.061 15 C -0.159 4.159 16 C 0.108 3.892 17 C -0.234 4.234 18 C -0.070 4.070 19 C -0.227 4.227 20 C 0.147 3.853 21 O -0.258 6.258 22 C 0.545 3.455 23 F -0.101 7.101 24 F -0.149 7.149 25 F -0.118 7.118 26 N -0.201 5.201 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.323 -7.101 0.779 7.512 hybrid contribution 0.302 0.437 0.015 0.531 sum -2.021 -6.664 0.794 7.009 Atomic orbital electron populations 1.70576 1.06282 1.26282 1.44317 1.25192 0.95825 0.98573 0.95929 0.85647 0.79022 0.80452 0.78197 1.19326 1.20245 1.20213 1.21505 0.91814 0.81425 1.51734 0.89289 1.84255 1.32814 1.10586 1.73496 1.19358 0.89944 0.87688 0.91255 1.21167 0.94160 0.99141 1.11230 1.20871 0.98474 0.92394 0.95857 1.20454 0.94572 0.96913 1.12654 1.20696 0.93525 0.95811 0.96109 1.17524 0.89850 0.91586 1.16920 1.19387 0.92568 0.86780 0.90514 1.21897 0.95461 0.98467 1.07539 1.21143 0.93548 0.97358 0.94919 1.20864 1.01377 0.89601 1.10907 1.19348 0.88462 0.83934 0.93598 1.86397 1.39076 1.13345 1.86970 1.18668 0.73581 0.75617 0.77650 1.93356 1.82355 1.95170 1.39241 1.93126 1.71923 1.53599 1.96302 1.93287 1.61188 1.95319 1.62053 1.67723 1.04198 1.32198 1.16020 0.92563 0.85315 0.87375 0.87297 0.86547 0.84678 0.84413 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.42 5.89 55.48 0.33 -22.09 16 2 C 0.05 1.31 5.49 -17.51 -0.10 1.22 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -10.31 9.44 30.89 0.29 -10.02 16 8 H 0.09 2.22 5.32 -52.48 -0.28 1.94 16 9 O -0.11 -3.07 7.53 0.42 0.00 -3.07 16 10 C 0.18 4.19 6.65 -38.73 -0.26 3.93 16 11 C -0.24 -5.02 9.12 -39.44 -0.36 -5.37 16 12 C -0.06 -1.01 10.03 -39.55 -0.40 -1.40 16 13 C -0.23 -3.72 10.03 -39.59 -0.40 -4.11 16 14 C -0.04 -0.72 9.41 -39.27 -0.37 -1.09 16 15 C -0.16 -3.28 5.89 -104.74 -0.62 -3.90 16 16 C 0.24 4.98 6.73 -82.97 -0.56 4.42 16 17 C -0.21 -3.37 9.46 -39.09 -0.37 -3.74 16 18 C -0.04 -0.62 10.16 -39.36 -0.40 -1.02 16 19 C -0.21 -3.32 10.04 -39.20 -0.39 -3.72 16 20 C 0.33 6.77 7.19 -17.15 -0.12 6.65 16 21 O -0.34 -7.36 10.35 -18.74 -0.19 -7.55 16 22 C 0.63 15.02 2.56 101.05 0.26 15.28 16 23 F -0.12 -3.13 13.27 2.25 0.03 -3.10 16 24 F -0.17 -3.67 17.53 2.25 0.04 -3.63 16 25 F -0.14 -3.56 14.12 2.25 0.03 -3.53 16 26 N -0.48 -11.07 5.86 -9.86 -0.06 -11.13 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.13 2.71 5.73 -52.49 -0.30 2.41 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.12 1.58 6.18 -52.49 -0.32 1.26 16 32 H 0.14 1.70 6.18 -52.49 -0.32 1.37 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -29.51 301.56 -6.14 -35.65 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.05 Total: 1.69 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.79 Total: -2.87 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.27 Total: -33.22 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.19 Total: -10.62 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.10 Total: -10.25 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.51 -6.14 -35.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.644 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds