Wall clock time and date at job start Tue Mar 31 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48499 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47299 * 300.00173 * 3 2 1 6 6 H 1.48501 * 109.46896 * 60.00300 * 3 2 1 7 7 C 1.38660 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.35645 * 116.99833 * 175.02517 * 9 7 2 11 11 C 1.38773 * 120.13411 * 353.25304 * 10 9 7 12 12 C 1.38096 * 120.04735 * 179.72730 * 11 10 9 13 13 C 1.38459 * 120.33590 * 0.02562 * 12 11 10 14 14 C 1.37983 * 120.28013 * 359.97438 * 13 12 11 15 15 C 1.39337 * 119.93926 * 0.04862 * 14 13 12 16 16 C 1.48200 * 120.16564 * 179.97438 * 15 14 13 17 17 C 1.39294 * 119.70062 * 359.67730 * 16 15 14 18 18 C 1.38518 * 119.18999 * 179.77147 * 17 16 15 19 19 C 1.38565 * 118.58321 * 0.49364 * 18 17 16 20 20 C 1.38937 * 119.32944 * 359.75094 * 19 18 17 21 21 O 1.35679 * 119.61480 * 179.97438 * 20 19 18 22 22 C 1.42905 * 116.99974 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.47045 * 59.99681 * 22 21 20 24 24 F 1.39894 * 109.47133 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.46928 * 299.99952 * 22 21 20 26 26 N 1.32159 * 120.77156 * 359.97438 * 20 19 18 27 27 H 0.96997 * 119.99518 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.98187 * 359.71102 * 11 10 9 29 29 H 1.08002 * 119.83047 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.86551 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.03284 * 180.02562 * 14 13 12 32 32 H 1.07998 * 120.40374 * 0.02562 * 17 16 15 33 33 H 1.07994 * 120.71125 * 180.22325 * 18 17 16 34 34 H 1.07997 * 120.33410 * 179.72734 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0889 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5037 -0.1059 11 6 3.4340 -3.4305 -0.3476 12 6 4.1813 -4.5873 -0.4489 13 6 3.5763 -5.8251 -0.3110 14 6 2.2205 -5.9138 -0.0704 15 6 1.4553 -4.7540 0.0335 16 6 -0.0014 -4.8434 0.2912 17 6 -0.6036 -6.0926 0.4225 18 6 -1.9650 -6.1638 0.6681 19 6 -2.6839 -4.9832 0.7644 20 6 -2.0227 -3.7699 0.6182 21 8 -2.7211 -2.6104 0.7110 22 6 -1.9857 -1.3956 0.5512 23 9 -1.3887 -1.3748 -0.7139 24 9 -2.8535 -0.3054 0.6748 25 9 -0.9948 -1.3174 1.5358 26 7 -0.7216 -3.7322 0.3900 27 1 -0.4849 0.8401 0.0004 28 1 3.9119 -2.4682 -0.4569 29 1 5.2430 -4.5263 -0.6376 30 1 4.1681 -6.7249 -0.3912 31 1 1.7527 -6.8813 0.0369 32 1 -0.0155 -6.9945 0.3380 33 1 -2.4564 -7.1192 0.7777 34 1 -3.7474 -5.0058 0.9508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:13 Heat of formation + Delta-G solvation = -129.522936 kcal Electronic energy + Delta-G solvation = -28996.906134 eV Core-core repulsion = 24447.243765 eV Total energy + Delta-G solvation = -4549.662369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.45278 -48.32719 -47.84178 -41.62207 -40.50777 -38.89297 -37.87849 -34.22707 -33.66874 -32.91869 -30.57976 -29.95231 -27.31133 -26.56537 -25.02224 -24.13205 -22.66512 -22.27266 -20.56270 -19.67355 -19.48520 -19.25755 -18.71542 -17.53550 -16.96566 -16.74494 -16.42146 -16.26494 -15.98328 -15.89175 -15.41111 -15.22237 -15.12320 -14.90263 -14.64260 -14.42986 -14.22427 -14.08780 -14.04277 -13.92768 -13.75720 -13.69023 -13.17785 -12.90457 -12.85955 -12.50647 -12.34824 -12.19408 -12.02278 -11.21780 -10.93253 -10.63163 -10.25693 -10.21513 -9.28616 -8.66406 -8.22972 -5.93489 -0.24518 0.38395 0.81476 0.83602 0.99229 1.35605 1.42715 1.50094 2.19992 2.73273 2.81234 3.03013 3.20119 3.39317 3.60197 3.68312 3.84581 3.89026 4.05521 4.20628 4.26796 4.30193 4.39790 4.55934 4.73834 4.80274 5.01378 5.09421 5.20118 5.23668 5.31171 5.39295 5.66688 5.74967 5.81182 5.97545 6.08781 6.28637 7.05406 7.10910 7.93898 8.79351 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.008702 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.585267 B = 3217.002865 C = 5746.889677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C -0.002 4.002 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.415 4.415 8 H 0.087 0.913 9 O -0.158 6.158 10 C 0.135 3.865 11 C -0.264 4.264 12 C -0.056 4.056 13 C -0.204 4.204 14 C -0.039 4.039 15 C -0.168 4.168 16 C 0.197 3.803 17 C -0.190 4.190 18 C -0.028 4.028 19 C -0.186 4.186 20 C 0.274 3.726 21 O -0.340 6.340 22 C 0.638 3.362 23 F -0.139 7.139 24 F -0.163 7.163 25 F -0.156 7.156 26 N -0.524 5.524 27 H 0.256 0.744 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.200 0.800 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -13.113 0.949 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.203 4.203 3 Si 0.827 3.173 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.492 4.492 8 H 0.105 0.895 9 O -0.059 6.059 10 C 0.080 3.920 11 C -0.283 4.283 12 C -0.075 4.075 13 C -0.222 4.222 14 C -0.058 4.058 15 C -0.171 4.171 16 C 0.063 3.937 17 C -0.209 4.209 18 C -0.052 4.052 19 C -0.207 4.207 20 C 0.096 3.904 21 O -0.256 6.256 22 C 0.548 3.452 23 F -0.120 7.120 24 F -0.145 7.145 25 F -0.138 7.138 26 N -0.246 5.246 27 H 0.066 0.934 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.181 0.819 32 H 0.195 0.805 33 H 0.217 0.783 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.946 -11.971 0.919 12.163 hybrid contribution 0.235 1.437 -0.025 1.456 sum -1.711 -10.534 0.893 10.710 Atomic orbital electron populations 1.70746 1.07272 1.25981 1.46702 1.26125 0.96828 1.01348 0.96011 0.84715 0.78142 0.76474 0.77941 1.18436 1.19987 1.20164 1.21722 0.91921 0.82464 1.53062 0.89528 1.84256 1.33406 1.11040 1.77172 1.20108 0.91271 0.88376 0.92248 1.21263 0.93863 1.00183 1.13020 1.21296 0.99991 0.91754 0.94422 1.21086 0.94694 0.97857 1.08591 1.21237 0.93779 0.96253 0.94519 1.18154 0.91150 0.91810 1.15967 1.19782 0.92578 0.88218 0.93152 1.22363 0.96707 0.97643 1.04235 1.21850 0.92646 0.98686 0.92068 1.21425 1.03030 0.88327 1.07871 1.19994 0.88785 0.84703 0.96939 1.86389 1.38662 1.13074 1.87521 1.18598 0.73403 0.76557 0.76646 1.93301 1.82942 1.95399 1.40408 1.93111 1.71462 1.53666 1.96220 1.93231 1.62335 1.95548 1.62681 1.67518 1.05616 1.34560 1.16856 0.93397 0.86924 0.84042 0.82523 0.81858 0.80468 0.78319 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.25 5.89 21.62 0.13 -50.13 16 2 C 0.00 -0.13 5.49 84.83 0.47 0.34 16 3 Si 1.00 44.16 29.55 68.60 2.03 46.18 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.42 -23.92 9.44 67.92 0.64 -23.28 16 8 H 0.09 4.74 5.32 -2.91 -0.02 4.73 16 9 O -0.16 -9.16 7.53 -21.41 -0.16 -9.32 16 10 C 0.14 6.72 6.65 22.82 0.15 6.87 16 11 C -0.26 -11.50 9.12 22.36 0.20 -11.30 16 12 C -0.06 -1.85 10.03 22.29 0.22 -1.63 16 13 C -0.20 -5.69 10.03 22.26 0.22 -5.46 16 14 C -0.04 -1.18 9.41 22.47 0.21 -0.97 16 15 C -0.17 -6.97 5.89 -19.94 -0.12 -7.09 16 16 C 0.20 7.94 6.73 41.90 0.28 8.22 16 17 C -0.19 -5.09 9.46 22.59 0.21 -4.88 16 18 C -0.03 -0.61 10.16 22.41 0.23 -0.38 16 19 C -0.19 -5.41 10.04 22.52 0.23 -5.18 16 20 C 0.27 11.49 7.19 84.81 0.61 12.10 16 21 O -0.34 -15.25 10.35 -89.96 -0.93 -16.18 16 22 C 0.64 32.35 2.56 113.37 0.29 32.64 16 23 F -0.14 -7.84 13.27 44.97 0.60 -7.25 16 24 F -0.16 -7.60 17.53 44.97 0.79 -6.81 16 25 F -0.16 -8.80 14.12 44.97 0.63 -8.16 16 26 N -0.52 -24.95 5.86 -298.03 -1.75 -26.69 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.11 5.11 5.73 -2.91 -0.02 5.10 16 29 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.16 3.27 6.18 -2.91 -0.02 3.25 16 32 H 0.18 3.13 6.18 -2.91 -0.02 3.12 16 33 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -75.19 301.56 6.38 -68.82 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.19 Total: 9.54 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.85 Total: -0.01 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.62 Total: -76.82 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.09 Total: -25.50 kcal Atomic # 9 Polarization: -24.24 SS G_CDS: 2.02 Total: -22.22 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -75.19 6.38 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.706 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds