Wall clock time and date at job start Tue Mar 31 2020 15:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47655 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46859 * 120.00214 * 3 2 1 7 7 C 1.40126 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00574 * 180.02562 * 7 2 1 9 9 C 1.40694 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.34103 * 120.58235 * 9.31368 * 9 7 2 11 11 C 1.31519 * 119.86155 * 180.02562 * 10 9 7 12 12 C 1.39039 * 121.14750 * 0.02562 * 11 10 9 13 13 N 1.31878 * 121.22464 * 359.69215 * 12 11 10 14 14 C 1.33068 * 120.03362 * 0.56315 * 13 12 11 15 15 C 1.47563 * 120.55389 * 179.74553 * 14 13 12 16 16 C 1.39872 * 120.06110 * 223.51816 * 15 14 13 17 17 C 1.37704 * 120.01196 * 179.97438 * 16 15 14 18 18 C 1.39081 * 120.13280 * 0.28065 * 17 16 15 19 19 N 1.39388 * 119.94442 * 179.72080 * 18 17 16 20 20 C 1.39682 * 120.11461 * 359.48978 * 18 17 16 21 21 O 1.36001 * 120.00728 * 180.27984 * 20 18 17 22 22 C 1.42903 * 117.00096 * 180.20931 * 21 20 18 23 23 F 1.39899 * 109.47006 * 59.99582 * 22 21 20 24 24 F 1.39903 * 109.47244 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.46780 * 299.99538 * 22 21 20 26 26 C 1.38019 * 119.98673 * 0.48195 * 20 18 17 27 27 H 0.96993 * 119.99595 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.42166 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.38544 * 180.02562 * 12 11 10 30 30 H 1.07996 * 119.99063 * 0.02562 * 16 15 14 31 31 H 1.08006 * 119.93168 * 180.02562 * 17 16 15 32 32 H 0.97006 * 119.99253 * 359.97438 * 19 18 17 33 33 H 0.96998 * 120.00196 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.06460 * 179.74323 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.0949 1.6966 -1.2125 5 1 1.2761 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2135 -0.0001 9 6 1.3044 -2.4319 -0.0005 10 7 -0.0234 -2.4532 -0.1869 11 6 -0.6668 -3.6002 -0.1837 12 6 0.0056 -4.8015 0.0109 13 7 1.3115 -4.8323 0.1927 14 6 2.0093 -3.6994 0.2036 15 6 3.4700 -3.7201 0.4117 16 6 4.0689 -2.7909 1.2687 17 6 5.4321 -2.8114 1.4626 18 6 6.2170 -3.7513 0.8031 19 7 7.5971 -3.7649 0.9978 20 6 5.6241 -4.6848 -0.0502 21 8 6.3931 -5.6065 -0.6895 22 6 5.7206 -6.5275 -1.5507 23 9 5.0595 -5.8226 -2.5622 24 9 6.6543 -7.3986 -2.1222 25 9 4.7895 -7.2635 -0.8101 26 6 4.2582 -4.6690 -0.2477 27 1 -0.4849 0.8400 0.0004 28 1 -1.7363 -3.6090 -0.3340 29 1 -0.5510 -5.7270 0.0077 30 1 3.4619 -2.0578 1.7790 31 1 5.8931 -2.0936 2.1250 32 1 8.0093 -3.1188 1.5926 33 1 8.1454 -4.4197 0.5380 34 1 3.7989 -5.3875 -0.9104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244261118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:20 Heat of formation + Delta-G solvation = -128.329816 kcal Electronic energy + Delta-G solvation = -27423.754991 eV Core-core repulsion = 22906.437111 eV Total energy + Delta-G solvation = -4517.317880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.22244 -47.99741 -47.77134 -39.96938 -38.71626 -37.21767 -34.47526 -34.21489 -32.04772 -30.49880 -29.98232 -27.77205 -26.09765 -25.73061 -23.13154 -22.41239 -21.81983 -20.97799 -19.15877 -18.90615 -18.76168 -17.73675 -16.89541 -16.71782 -16.07048 -15.78747 -15.01464 -14.95017 -14.82522 -14.59622 -14.29836 -14.24718 -14.19774 -14.17425 -14.02463 -13.91762 -13.23753 -13.11729 -12.83694 -12.60834 -12.20477 -12.12999 -11.63547 -11.48614 -11.34202 -10.78344 -10.70953 -10.54112 -10.15934 -9.82976 -9.61773 -9.16439 -8.31539 -7.89566 -7.51387 -6.94041 -6.61710 -4.77505 1.70412 1.72647 1.75348 2.50001 2.92988 2.94114 2.96073 3.09924 3.17768 3.72612 3.99437 4.06256 4.10910 4.33468 4.53509 5.14175 5.21605 5.47509 5.61818 5.72328 5.91317 5.93629 6.08802 6.21902 6.28163 6.48131 6.62758 6.74373 6.83238 6.93195 7.01156 7.22047 7.33453 7.60966 7.71799 7.91676 7.92908 8.26868 8.54765 9.18561 9.75490 9.95949 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004819 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.364230 B = 5808.695119 C = 7132.039478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.064 3.936 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.397 4.397 8 H 0.101 0.899 9 C 0.225 3.775 10 N -0.461 5.461 11 C 0.092 3.908 12 C -0.125 4.125 13 N -0.410 5.410 14 C -0.030 4.030 15 C 0.013 3.987 16 C -0.068 4.068 17 C -0.172 4.172 18 C 0.202 3.798 19 N -0.877 5.877 20 C 0.011 3.989 21 O -0.319 6.319 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.142 7.142 25 F -0.163 7.163 26 C -0.129 4.129 27 H 0.281 0.719 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.397 0.603 33 H 0.398 0.602 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.229 -3.915 0.501 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.426 4.426 8 H 0.119 0.881 9 C 0.099 3.901 10 N -0.177 5.177 11 C -0.078 4.078 12 C -0.285 4.285 13 N -0.122 5.122 14 C -0.179 4.179 15 C 0.009 3.991 16 C -0.088 4.088 17 C -0.194 4.194 18 C 0.099 3.901 19 N -0.418 5.418 20 C -0.034 4.034 21 O -0.239 6.239 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.124 7.124 25 F -0.145 7.145 26 C -0.150 4.150 27 H 0.093 0.907 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.055 -3.809 0.462 11.702 hybrid contribution 0.289 0.332 -0.284 0.524 sum 11.344 -3.477 0.177 11.866 Atomic orbital electron populations 1.70042 1.07535 1.29047 1.25464 1.26241 0.95019 1.01671 0.93496 0.86282 0.80191 0.79564 0.80505 1.18427 1.19896 1.18303 1.19787 0.95320 0.88867 1.38674 0.88117 1.20344 0.88764 0.91721 0.89275 1.69555 1.07555 1.24354 1.16248 1.23389 0.99841 0.90347 0.94243 1.22375 0.91249 0.97764 1.17133 1.67737 1.07789 1.29759 1.06916 1.21135 0.91913 0.90225 1.14620 1.17861 0.91025 0.94348 0.95849 1.21299 0.93492 0.97834 0.96156 1.20345 0.93685 1.00772 1.04626 1.16931 0.84598 0.93679 0.94929 1.42108 1.03958 1.40932 1.54831 1.17883 0.89817 0.93931 1.01790 1.86184 1.36351 1.43354 1.58047 1.19320 0.74577 0.77673 0.77141 1.93310 1.81000 1.78720 1.61708 1.93256 1.66569 1.68435 1.84095 1.93320 1.66240 1.78066 1.76903 1.21388 0.90298 1.01226 1.02039 0.90740 0.85462 0.85699 0.84149 0.85259 0.77511 0.77407 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.24 11.55 55.56 0.64 -16.60 16 2 C 0.06 1.48 5.49 -17.32 -0.10 1.39 16 3 Si 0.91 16.93 29.56 -169.99 -5.02 11.90 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.40 -9.67 7.60 -37.95 -0.29 -9.96 16 8 H 0.10 2.28 5.47 -52.49 -0.29 1.99 16 9 C 0.22 5.86 6.65 -82.64 -0.55 5.31 16 10 N -0.46 -12.21 8.14 -9.55 -0.08 -12.28 16 11 C 0.09 2.16 11.17 -17.39 -0.19 1.97 16 12 C -0.13 -2.89 11.17 -17.23 -0.19 -3.08 16 13 N -0.41 -10.12 10.32 -7.86 -0.08 -10.20 16 14 C -0.03 -0.74 6.55 -80.22 -0.53 -1.27 16 15 C 0.01 0.27 5.37 -104.87 -0.56 -0.29 16 16 C -0.07 -1.28 7.62 -39.17 -0.30 -1.58 16 17 C -0.17 -2.66 9.87 -39.46 -0.39 -3.05 16 18 C 0.20 3.10 6.77 -83.57 -0.57 2.53 16 19 N -0.88 -9.90 9.06 32.54 0.29 -9.60 16 20 C 0.01 0.19 6.50 -39.12 -0.25 -0.06 16 21 O -0.32 -4.94 9.60 -19.74 -0.19 -5.13 16 22 C 0.60 9.08 3.42 101.05 0.35 9.42 16 23 F -0.17 -2.67 15.56 2.25 0.04 -2.63 16 24 F -0.14 -1.86 17.53 2.25 0.04 -1.82 16 25 F -0.16 -2.62 15.56 2.25 0.04 -2.59 16 26 C -0.13 -2.57 7.88 -39.05 -0.31 -2.88 16 27 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 28 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 29 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.14 2.67 6.76 -52.49 -0.35 2.32 16 31 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.40 3.42 8.84 -40.82 -0.36 3.06 16 33 H 0.40 4.15 8.17 -40.82 -0.33 3.82 16 34 H 0.13 2.68 5.08 -52.49 -0.27 2.41 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -28.68 311.05 -5.52 -34.20 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -2.00 Total: 11.62 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.88 Total: -1.54 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.78 Total: -48.69 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.02 Total: 11.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.68 -5.52 -34.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244261118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.131 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds