Wall clock time and date at job start Tue Mar 31 2020 15:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30716 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47655 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46859 * 120.00214 * 3 2 1 7 7 C 1.40126 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00574 * 180.02562 * 7 2 1 9 9 C 1.40694 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.34103 * 120.58235 * 9.31368 * 9 7 2 11 11 C 1.31519 * 119.86155 * 180.02562 * 10 9 7 12 12 C 1.39039 * 121.14750 * 0.02562 * 11 10 9 13 13 N 1.31878 * 121.22464 * 359.69215 * 12 11 10 14 14 C 1.33068 * 120.03362 * 0.56315 * 13 12 11 15 15 C 1.47563 * 120.55389 * 179.74553 * 14 13 12 16 16 C 1.39872 * 120.06110 * 223.51816 * 15 14 13 17 17 C 1.37704 * 120.01196 * 179.97438 * 16 15 14 18 18 C 1.39081 * 120.13280 * 0.28065 * 17 16 15 19 19 N 1.39388 * 119.94442 * 179.72080 * 18 17 16 20 20 C 1.39682 * 120.11461 * 359.48978 * 18 17 16 21 21 O 1.36001 * 120.00728 * 180.27984 * 20 18 17 22 22 C 1.42903 * 117.00096 * 180.20931 * 21 20 18 23 23 F 1.39899 * 109.47006 * 59.99582 * 22 21 20 24 24 F 1.39903 * 109.47244 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.46780 * 299.99538 * 22 21 20 26 26 C 1.38019 * 119.98673 * 0.48195 * 20 18 17 27 27 H 0.96993 * 119.99595 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.42166 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.38544 * 180.02562 * 12 11 10 30 30 H 1.07996 * 119.99063 * 0.02562 * 16 15 14 31 31 H 1.08006 * 119.93168 * 180.02562 * 17 16 15 32 32 H 0.97006 * 119.99253 * 359.97438 * 19 18 17 33 33 H 0.96998 * 120.00196 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.06460 * 179.74323 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.0949 1.6966 -1.2125 5 1 1.2761 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2135 -0.0001 9 6 1.3044 -2.4319 -0.0005 10 7 -0.0234 -2.4532 -0.1869 11 6 -0.6668 -3.6002 -0.1837 12 6 0.0056 -4.8015 0.0109 13 7 1.3115 -4.8323 0.1927 14 6 2.0093 -3.6994 0.2036 15 6 3.4700 -3.7201 0.4117 16 6 4.0689 -2.7909 1.2687 17 6 5.4321 -2.8114 1.4626 18 6 6.2170 -3.7513 0.8031 19 7 7.5971 -3.7649 0.9978 20 6 5.6241 -4.6848 -0.0502 21 8 6.3931 -5.6065 -0.6895 22 6 5.7206 -6.5275 -1.5507 23 9 5.0595 -5.8226 -2.5622 24 9 6.6543 -7.3986 -2.1222 25 9 4.7895 -7.2635 -0.8101 26 6 4.2582 -4.6690 -0.2477 27 1 -0.4849 0.8400 0.0004 28 1 -1.7363 -3.6090 -0.3340 29 1 -0.5510 -5.7270 0.0077 30 1 3.4619 -2.0578 1.7790 31 1 5.8931 -2.0936 2.1250 32 1 8.0093 -3.1188 1.5926 33 1 8.1454 -4.4197 0.5380 34 1 3.7989 -5.3875 -0.9104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244261118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:20 Heat of formation + Delta-G solvation = -147.407708 kcal Electronic energy + Delta-G solvation = -27424.582271 eV Core-core repulsion = 22906.437111 eV Total energy + Delta-G solvation = -4518.145160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.44316 -49.17126 -49.03812 -41.32726 -40.43949 -38.54972 -35.99875 -35.75828 -33.82267 -32.14598 -31.35504 -29.24073 -27.84933 -27.02661 -24.68134 -23.93793 -23.44901 -22.46335 -20.49447 -20.14197 -19.99523 -19.51587 -18.17637 -17.96770 -17.71550 -17.19767 -16.72899 -16.25568 -16.21183 -15.89345 -15.77231 -15.52754 -15.46507 -15.44885 -15.31800 -15.17002 -14.79780 -14.56183 -14.36587 -14.10411 -13.76086 -13.44758 -13.29493 -13.00727 -12.88926 -12.26033 -12.20170 -12.03328 -11.78222 -11.49331 -11.40071 -10.92082 -9.71260 -9.60065 -9.31474 -8.47207 -8.17108 -6.59052 0.17388 0.37073 0.48537 0.80962 1.27097 1.42733 1.56139 1.59120 1.86443 2.18907 2.72493 2.80104 2.81673 2.97409 3.02611 3.69595 3.76949 3.84036 4.06776 4.22051 4.35287 4.42294 4.52120 4.66234 4.80683 4.88460 5.08500 5.13518 5.18892 5.41090 5.46229 5.78100 5.86667 5.92618 6.14183 6.48067 6.56692 6.73225 7.05905 7.36365 7.92583 8.26076 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004819 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.364230 B = 5808.695119 C = 7132.039478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.022 3.978 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.411 4.411 8 H 0.113 0.887 9 C 0.190 3.810 10 N -0.496 5.496 11 C 0.078 3.922 12 C -0.135 4.135 13 N -0.433 5.433 14 C -0.035 4.035 15 C -0.029 4.029 16 C -0.071 4.071 17 C -0.161 4.161 18 C 0.222 3.778 19 N -0.855 5.855 20 C 0.002 3.998 21 O -0.309 6.309 22 C 0.607 3.393 23 F -0.173 7.173 24 F -0.127 7.127 25 F -0.171 7.171 26 C -0.136 4.136 27 H 0.288 0.712 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.171 0.829 32 H 0.415 0.585 33 H 0.406 0.594 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 -2.852 1.246 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.203 4.203 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.165 1.165 7 C -0.441 4.441 8 H 0.130 0.870 9 C 0.064 3.936 10 N -0.213 5.213 11 C -0.091 4.091 12 C -0.294 4.294 13 N -0.145 5.145 14 C -0.184 4.184 15 C -0.033 4.033 16 C -0.091 4.091 17 C -0.183 4.183 18 C 0.115 3.885 19 N -0.396 5.396 20 C -0.044 4.044 21 O -0.230 6.230 22 C 0.516 3.484 23 F -0.156 7.156 24 F -0.109 7.109 25 F -0.153 7.153 26 C -0.157 4.157 27 H 0.099 0.901 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.188 0.812 32 H 0.246 0.754 33 H 0.236 0.764 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.087 -2.784 1.219 14.411 hybrid contribution -0.512 -0.106 -0.507 0.728 sum 13.575 -2.891 0.711 13.898 Atomic orbital electron populations 1.70134 1.09346 1.30420 1.26159 1.27221 0.95724 1.05034 0.92326 0.85168 0.78824 0.74511 0.80977 1.18234 1.19317 1.16538 1.20138 0.96001 0.89150 1.38779 0.86953 1.20848 0.89179 0.93146 0.90415 1.69509 1.08284 1.25727 1.17824 1.23817 1.01116 0.90046 0.94095 1.22822 0.91215 0.98799 1.16597 1.67812 1.08505 1.30153 1.08000 1.21636 0.93695 0.89759 1.13343 1.17895 0.89693 0.96883 0.98788 1.21272 0.94971 0.97033 0.95795 1.20658 0.92207 1.01052 1.04381 1.17031 0.86284 0.92147 0.93043 1.42101 1.02225 1.41066 1.54244 1.17919 0.89076 0.94845 1.02549 1.86176 1.35750 1.43097 1.57943 1.19280 0.74622 0.77639 0.76894 1.93296 1.81290 1.78979 1.61994 1.93290 1.65896 1.67865 1.83802 1.93306 1.66687 1.78178 1.77112 1.21233 0.91535 1.00780 1.02131 0.90112 0.82863 0.83010 0.85010 0.81167 0.75353 0.76438 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.20 11.55 21.86 0.25 -36.94 16 2 C 0.02 1.00 5.49 85.32 0.47 1.47 16 3 Si 0.99 33.92 29.56 68.60 2.03 35.94 16 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 6 H -0.24 -7.62 7.11 99.48 0.71 -6.91 16 7 C -0.41 -20.43 7.60 23.33 0.18 -20.25 16 8 H 0.11 5.11 5.47 -2.91 -0.02 5.09 16 9 C 0.19 10.28 6.65 41.54 0.28 10.56 16 10 N -0.50 -27.36 8.14 -184.14 -1.50 -28.86 16 11 C 0.08 3.79 11.17 84.93 0.95 4.74 16 12 C -0.14 -6.43 11.17 84.88 0.95 -5.49 16 13 N -0.43 -22.14 10.32 -178.79 -1.84 -23.99 16 14 C -0.03 -1.79 6.55 43.56 0.29 -1.50 16 15 C -0.03 -1.27 5.37 -20.03 -0.11 -1.37 16 16 C -0.07 -2.60 7.62 22.54 0.17 -2.43 16 17 C -0.16 -4.44 9.87 22.35 0.22 -4.22 16 18 C 0.22 6.04 6.77 38.49 0.26 6.30 16 19 N -0.85 -15.36 9.06 -50.97 -0.46 -15.83 16 20 C 0.00 0.07 6.50 22.57 0.15 0.22 16 21 O -0.31 -9.01 9.60 -93.56 -0.90 -9.91 16 22 C 0.61 17.73 3.42 113.37 0.39 18.11 16 23 F -0.17 -5.60 15.56 44.97 0.70 -4.90 16 24 F -0.13 -3.14 17.53 44.97 0.79 -2.35 16 25 F -0.17 -5.48 15.56 44.97 0.70 -4.78 16 26 C -0.14 -5.47 7.88 22.61 0.18 -5.29 16 27 H 0.29 12.96 8.29 -92.71 -0.77 12.20 16 28 H 0.15 6.33 8.06 -2.91 -0.02 6.31 16 29 H 0.15 6.12 8.06 -2.91 -0.02 6.09 16 30 H 0.13 5.01 6.76 -2.91 -0.02 4.99 16 31 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.42 4.91 8.84 -92.70 -0.82 4.09 16 33 H 0.41 6.67 8.17 -92.71 -0.76 5.91 16 34 H 0.11 4.84 5.08 -2.91 -0.01 4.82 16 Total: -1.00 -64.91 311.05 3.78 -61.13 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.35 Total: 29.62 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 4.36 Total: 0.85 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.55 Total: -105.62 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.90 Total: -9.91 kcal Atomic # 9 Polarization: -14.21 SS G_CDS: 2.19 Total: -12.03 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.94 kcal Total: -64.91 3.78 -61.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244261118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.283 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds