Wall clock time and date at job start Tue Mar 31 2020 15:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86805 * 119.99574 * 2 1 4 4 H 1.48506 * 109.47021 * 269.99929 * 3 2 1 5 5 H 1.48494 * 109.47231 * 30.00334 * 3 2 1 6 6 H 1.48504 * 109.46780 * 150.00181 * 3 2 1 7 7 C 1.40026 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00425 * 186.26198 * 7 2 1 9 9 C 1.41315 * 120.00057 * 6.26414 * 7 2 1 10 10 C 1.40843 * 120.14537 * 173.70931 * 9 7 2 11 11 N 1.31882 * 119.97553 * 179.70154 * 10 9 7 12 12 C 1.32177 * 120.29264 * 0.52801 * 11 10 9 13 13 C 1.40076 * 120.29382 * 359.48850 * 12 11 10 14 14 C 1.48167 * 119.99434 * 180.25828 * 13 12 11 15 15 C 1.39481 * 120.03636 * 180.02562 * 14 13 12 16 16 C 1.37893 * 120.03777 * 179.97438 * 15 14 13 17 17 C 1.38913 * 120.10562 * 359.97438 * 16 15 14 18 18 N 1.39671 * 119.96185 * 179.97438 * 17 16 15 19 19 C 1.39488 * 120.07012 * 359.97438 * 17 16 15 20 20 O 1.36014 * 120.01466 * 180.02562 * 19 17 16 21 21 C 1.42904 * 116.99510 * 179.97438 * 20 19 17 22 22 F 1.39901 * 109.47320 * 60.00581 * 21 20 19 23 23 F 1.39908 * 109.46580 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.47507 * 300.00024 * 21 20 19 25 25 C 1.38192 * 119.96864 * 359.78409 * 19 17 16 26 26 N 1.32599 * 120.01509 * 0.23233 * 13 12 11 27 27 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.01642 * 359.96958 * 10 9 7 29 29 H 1.07998 * 119.85299 * 179.77044 * 12 11 10 30 30 H 1.08006 * 119.98169 * 359.95213 * 15 14 13 31 31 H 1.07996 * 119.94685 * 180.02562 * 16 15 14 32 32 H 0.96994 * 119.99768 * 0.02562 * 18 17 16 33 33 H 0.96996 * 119.99605 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.05772 * 180.23029 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2155 0.1015 9 6 1.3075 -2.4328 -0.1346 10 6 2.0150 -3.6432 -0.2686 11 7 1.3581 -4.7806 -0.3876 12 6 0.0364 -4.7900 -0.3923 13 6 -0.6791 -3.5930 -0.2602 14 6 -2.1607 -3.6118 -0.2605 15 6 -2.8740 -2.4204 -0.1295 16 6 -4.2528 -2.4378 -0.1304 17 6 -4.9344 -3.6410 -0.2621 18 7 -6.3311 -3.6552 -0.2621 19 6 -4.2255 -4.8350 -0.3945 20 8 -4.8940 -6.0124 -0.5239 21 6 -4.1039 -7.1959 -0.6557 22 9 -3.2953 -7.3453 0.4761 23 9 -4.9452 -8.3070 -0.7782 24 9 -3.2978 -7.0941 -1.7946 25 6 -2.8437 -4.8205 -0.3990 26 7 -0.0309 -2.4432 -0.1342 27 1 -0.4850 0.8401 -0.0004 28 1 3.0950 -3.6405 -0.2696 29 1 -0.4942 -5.7251 -0.4939 30 1 -2.3462 -1.4837 -0.0270 31 1 -4.8037 -1.5144 -0.0293 32 1 -6.8245 -2.8252 -0.1705 33 1 -6.8075 -4.4952 -0.3537 34 1 -2.2933 -5.7437 -0.5051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244269021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:24 Heat of formation + Delta-G solvation = -127.087749 kcal Electronic energy + Delta-G solvation = -27137.105286 eV Core-core repulsion = 22619.841266 eV Total energy + Delta-G solvation = -4517.264020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.35383 -48.11741 -47.91364 -40.16488 -38.94042 -37.38696 -34.70413 -34.05477 -32.02384 -30.75186 -30.01606 -27.92112 -25.97791 -25.86212 -23.21531 -22.94382 -21.73577 -20.99830 -19.20079 -19.04373 -18.92590 -17.70369 -16.93920 -16.81186 -16.16185 -15.46799 -15.23655 -15.14528 -14.92001 -14.83790 -14.43559 -14.40271 -14.34557 -14.19804 -14.07296 -14.06438 -13.29446 -13.15046 -13.13261 -12.81286 -12.25315 -11.82452 -11.58000 -11.43186 -11.31375 -10.93030 -10.76314 -10.65944 -10.35096 -9.87156 -9.57376 -9.09139 -8.47896 -8.07132 -7.50779 -6.93797 -6.59482 -4.74820 1.39320 1.58772 1.60503 2.60900 2.95487 2.96256 2.99576 3.02362 3.14553 3.80141 3.84349 3.90672 3.98874 4.19821 4.65268 4.91747 4.95146 5.45105 5.52770 5.68125 5.74340 5.92144 5.94383 6.05787 6.28436 6.43129 6.58035 6.66171 6.89153 6.92150 7.04638 7.15711 7.25642 7.52849 7.60272 7.77673 7.98487 8.35347 8.59748 9.18227 9.74686 10.06546 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003861 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.520370 B = 7250.222118 C = 8615.678649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.210 3.790 10 C -0.062 4.062 11 N -0.429 5.429 12 C -0.107 4.107 13 C 0.142 3.858 14 C -0.036 4.036 15 C -0.040 4.040 16 C -0.178 4.178 17 C 0.217 3.783 18 N -0.875 5.875 19 C 0.007 3.993 20 O -0.317 6.317 21 C 0.603 3.397 22 F -0.164 7.164 23 F -0.140 7.140 24 F -0.165 7.165 25 C -0.128 4.128 26 N -0.443 5.443 27 H 0.277 0.723 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.399 0.601 33 H 0.400 0.600 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 -4.549 -0.524 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.232 4.232 11 N -0.140 5.140 12 C -0.266 4.266 13 C -0.004 4.004 14 C -0.040 4.040 15 C -0.060 4.060 16 C -0.201 4.201 17 C 0.112 3.888 18 N -0.416 5.416 19 C -0.038 4.038 20 O -0.237 6.237 21 C 0.513 3.487 22 F -0.147 7.147 23 F -0.121 7.121 24 F -0.147 7.147 25 C -0.148 4.148 26 N -0.160 5.160 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.434 -4.467 -0.513 13.222 hybrid contribution 0.183 0.309 -0.073 0.367 sum -12.251 -4.158 -0.585 12.950 Atomic orbital electron populations 1.70037 1.07420 1.28346 1.27575 1.26098 0.94982 1.01379 0.93324 0.86219 0.80458 0.80198 0.79411 1.19240 1.19997 1.18361 1.19627 0.95043 0.89157 1.40639 0.89070 1.19357 0.88734 0.93437 0.90183 1.23231 0.99327 0.89343 1.11258 1.67659 1.08767 1.30068 1.07505 1.22468 0.90700 0.96932 1.16487 1.20500 0.92206 0.91726 0.95992 1.18236 0.91672 0.91712 1.02334 1.21550 0.92222 0.99861 0.92327 1.20502 0.94665 0.94981 1.09944 1.17026 0.83997 0.90318 0.97446 1.42237 1.02729 1.11740 1.84895 1.17771 0.90645 0.81527 1.13862 1.86212 1.34937 1.12991 1.89599 1.19331 0.74985 0.79422 0.75006 1.93316 1.73616 1.95570 1.52150 1.93270 1.72262 1.50745 1.95841 1.93313 1.73759 1.95769 1.51821 1.21357 0.91044 1.00084 1.02312 1.69530 1.08042 1.22931 1.15535 0.91222 0.84825 0.85842 0.82355 0.85044 0.77300 0.77241 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.17 11.51 55.55 0.64 -16.53 16 2 C 0.07 1.60 5.49 -17.35 -0.10 1.51 16 3 Si 0.91 17.23 29.56 -169.99 -5.03 12.21 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.41 -10.30 9.15 -37.74 -0.35 -10.64 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.68 16 9 C 0.21 5.53 6.54 -84.84 -0.55 4.97 16 10 C -0.06 -1.54 10.98 -16.55 -0.18 -1.72 16 11 N -0.43 -10.73 10.47 -12.04 -0.13 -10.85 16 12 C -0.11 -2.57 10.62 -16.71 -0.18 -2.74 16 13 C 0.14 3.44 6.73 -82.77 -0.56 2.88 16 14 C -0.04 -0.74 5.88 -104.88 -0.62 -1.36 16 15 C -0.04 -0.76 9.57 -39.24 -0.38 -1.13 16 16 C -0.18 -2.68 9.87 -39.46 -0.39 -3.07 16 17 C 0.22 3.10 6.77 -83.57 -0.57 2.54 16 18 N -0.88 -9.11 9.08 32.52 0.30 -8.81 16 19 C 0.01 0.12 6.50 -39.13 -0.25 -0.14 16 20 O -0.32 -4.45 9.61 -19.79 -0.19 -4.64 16 21 C 0.60 8.15 3.42 101.05 0.35 8.49 16 22 F -0.16 -2.35 15.58 2.25 0.04 -2.32 16 23 F -0.14 -1.66 17.53 2.25 0.04 -1.62 16 24 F -0.16 -2.36 15.55 2.25 0.04 -2.32 16 25 C -0.13 -2.30 7.63 -39.12 -0.30 -2.60 16 26 N -0.44 -11.58 7.15 -7.51 -0.05 -11.64 16 27 H 0.28 5.97 8.29 -40.82 -0.34 5.63 16 28 H 0.13 3.00 8.06 -52.48 -0.42 2.58 16 29 H 0.12 2.65 6.18 -52.49 -0.32 2.32 16 30 H 0.16 3.28 7.54 -52.48 -0.40 2.88 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.40 3.14 8.84 -40.82 -0.36 2.78 16 33 H 0.40 3.78 8.17 -40.82 -0.33 3.45 16 34 H 0.13 2.38 3.21 -52.49 -0.17 2.21 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -28.21 312.70 -5.68 -33.89 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -1.97 Total: 10.95 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -4.07 Total: -3.01 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.75 Total: -47.84 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.21 -5.68 -33.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244269021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.200 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds