Wall clock time and date at job start Tue Mar 31 2020 15:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86805 * 119.99574 * 2 1 4 4 H 1.48506 * 109.47021 * 269.99929 * 3 2 1 5 5 H 1.48494 * 109.47231 * 30.00334 * 3 2 1 6 6 H 1.48504 * 109.46780 * 150.00181 * 3 2 1 7 7 C 1.40026 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00425 * 186.26198 * 7 2 1 9 9 C 1.41315 * 120.00057 * 6.26414 * 7 2 1 10 10 C 1.40843 * 120.14537 * 173.70931 * 9 7 2 11 11 N 1.31882 * 119.97553 * 179.70154 * 10 9 7 12 12 C 1.32177 * 120.29264 * 0.52801 * 11 10 9 13 13 C 1.40076 * 120.29382 * 359.48850 * 12 11 10 14 14 C 1.48167 * 119.99434 * 180.25828 * 13 12 11 15 15 C 1.39481 * 120.03636 * 180.02562 * 14 13 12 16 16 C 1.37893 * 120.03777 * 179.97438 * 15 14 13 17 17 C 1.38913 * 120.10562 * 359.97438 * 16 15 14 18 18 N 1.39671 * 119.96185 * 179.97438 * 17 16 15 19 19 C 1.39488 * 120.07012 * 359.97438 * 17 16 15 20 20 O 1.36014 * 120.01466 * 180.02562 * 19 17 16 21 21 C 1.42904 * 116.99510 * 179.97438 * 20 19 17 22 22 F 1.39901 * 109.47320 * 60.00581 * 21 20 19 23 23 F 1.39908 * 109.46580 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.47507 * 300.00024 * 21 20 19 25 25 C 1.38192 * 119.96864 * 359.78409 * 19 17 16 26 26 N 1.32599 * 120.01509 * 0.23233 * 13 12 11 27 27 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.01642 * 359.96958 * 10 9 7 29 29 H 1.07998 * 119.85299 * 179.77044 * 12 11 10 30 30 H 1.08006 * 119.98169 * 359.95213 * 15 14 13 31 31 H 1.07996 * 119.94685 * 180.02562 * 16 15 14 32 32 H 0.96994 * 119.99768 * 0.02562 * 18 17 16 33 33 H 0.96996 * 119.99605 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.05772 * 180.23029 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2155 0.1015 9 6 1.3075 -2.4328 -0.1346 10 6 2.0150 -3.6432 -0.2686 11 7 1.3581 -4.7806 -0.3876 12 6 0.0364 -4.7900 -0.3923 13 6 -0.6791 -3.5930 -0.2602 14 6 -2.1607 -3.6118 -0.2605 15 6 -2.8740 -2.4204 -0.1295 16 6 -4.2528 -2.4378 -0.1304 17 6 -4.9344 -3.6410 -0.2621 18 7 -6.3311 -3.6552 -0.2621 19 6 -4.2255 -4.8350 -0.3945 20 8 -4.8940 -6.0124 -0.5239 21 6 -4.1039 -7.1959 -0.6557 22 9 -3.2953 -7.3453 0.4761 23 9 -4.9452 -8.3070 -0.7782 24 9 -3.2978 -7.0941 -1.7946 25 6 -2.8437 -4.8205 -0.3990 26 7 -0.0309 -2.4432 -0.1342 27 1 -0.4850 0.8401 -0.0004 28 1 3.0950 -3.6405 -0.2696 29 1 -0.4942 -5.7251 -0.4939 30 1 -2.3462 -1.4837 -0.0270 31 1 -4.8037 -1.5144 -0.0293 32 1 -6.8245 -2.8252 -0.1705 33 1 -6.8075 -4.4952 -0.3537 34 1 -2.2933 -5.7437 -0.5051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244269021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:23 Heat of formation + Delta-G solvation = -145.400088 kcal Electronic energy + Delta-G solvation = -27137.899369 eV Core-core repulsion = 22619.841266 eV Total energy + Delta-G solvation = -4518.058103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.44890 -49.17139 -49.04450 -41.48098 -40.66711 -38.65327 -36.07959 -35.76389 -33.79422 -32.37376 -31.39956 -29.35689 -27.77121 -27.04827 -24.81399 -24.42376 -23.28842 -22.46758 -20.46538 -20.15145 -20.10828 -19.39856 -18.19919 -18.01229 -17.72461 -17.10795 -16.79005 -16.59777 -16.29269 -15.96753 -15.69223 -15.56396 -15.47237 -15.45843 -15.28130 -15.19194 -14.95693 -14.73252 -14.52762 -14.09065 -13.49516 -13.41892 -13.32249 -13.01378 -12.88290 -12.45770 -12.29828 -12.07478 -11.94419 -11.62801 -11.46836 -10.79695 -9.83398 -9.74739 -9.35828 -8.38131 -8.24552 -6.64503 -0.11022 0.27758 0.45248 0.90733 1.23173 1.44797 1.56718 1.58655 1.83146 2.21905 2.62175 2.76348 2.86173 2.88487 3.02007 3.45752 3.67928 3.85497 3.99656 4.13826 4.29591 4.34946 4.43867 4.52971 4.67387 4.90434 5.01902 5.14623 5.21037 5.34513 5.37692 5.70367 5.77484 5.85902 6.14570 6.44992 6.50489 6.73136 6.96651 7.29488 7.87859 8.33010 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003861 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.520370 B = 7250.222118 C = 8615.678649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.435 4.435 8 H 0.102 0.898 9 C 0.178 3.822 10 C -0.087 4.087 11 N -0.438 5.438 12 C -0.127 4.127 13 C 0.139 3.861 14 C -0.076 4.076 15 C -0.049 4.049 16 C -0.169 4.169 17 C 0.237 3.763 18 N -0.852 5.852 19 C 0.004 3.996 20 O -0.307 6.307 21 C 0.606 3.394 22 F -0.170 7.170 23 F -0.127 7.127 24 F -0.170 7.170 25 C -0.125 4.125 26 N -0.467 5.467 27 H 0.287 0.713 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -3.567 -0.498 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.466 4.466 8 H 0.120 0.880 9 C 0.052 3.948 10 C -0.256 4.256 11 N -0.150 5.150 12 C -0.286 4.286 13 C -0.008 4.008 14 C -0.080 4.080 15 C -0.068 4.068 16 C -0.192 4.192 17 C 0.130 3.870 18 N -0.393 5.393 19 C -0.042 4.042 20 O -0.228 6.228 21 C 0.515 3.485 22 F -0.152 7.152 23 F -0.108 7.108 24 F -0.152 7.152 25 C -0.145 4.145 26 N -0.185 5.185 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.184 0.816 32 H 0.247 0.753 33 H 0.239 0.761 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.691 -3.509 -0.485 15.112 hybrid contribution 0.622 -0.057 -0.083 0.630 sum -14.069 -3.566 -0.568 14.525 Atomic orbital electron populations 1.70113 1.08909 1.29974 1.26787 1.27029 0.95852 1.04553 0.92460 0.85026 0.79048 0.75178 0.79433 1.18921 1.18979 1.17792 1.20059 0.95835 0.89795 1.40916 0.88005 1.19831 0.89467 0.94510 0.90991 1.23434 1.00100 0.89268 1.12825 1.67636 1.09465 1.30211 1.07657 1.22800 0.90611 0.97923 1.17217 1.21069 0.94301 0.91201 0.94247 1.18162 0.89927 0.93470 1.06445 1.21387 0.93851 0.98257 0.93351 1.20686 0.93135 0.96661 1.08695 1.17067 0.85637 0.89390 0.94939 1.42242 1.01046 1.13350 1.82659 1.17789 0.90007 0.82666 1.13785 1.86211 1.34487 1.12608 1.89463 1.19291 0.74989 0.79530 0.74671 1.93310 1.73856 1.95583 1.52426 1.93302 1.71795 1.49958 1.95751 1.93307 1.73998 1.95807 1.52074 1.21269 0.92081 0.99013 1.02145 1.69556 1.08083 1.23971 1.16930 0.90225 0.83340 0.84046 0.84799 0.81612 0.75273 0.76132 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.11 11.51 21.84 0.25 -35.85 16 2 C 0.03 1.19 5.49 85.29 0.47 1.65 16 3 Si 0.99 34.97 29.56 68.60 2.03 37.00 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 7 C -0.43 -22.27 9.15 23.46 0.21 -22.05 16 8 H 0.10 4.78 7.85 -2.91 -0.02 4.75 16 9 C 0.18 9.80 6.54 40.23 0.26 10.07 16 10 C -0.09 -4.55 10.98 85.32 0.94 -3.61 16 11 N -0.44 -22.81 10.47 -192.00 -2.01 -24.82 16 12 C -0.13 -6.32 10.62 85.09 0.90 -5.42 16 13 C 0.14 6.99 6.73 42.11 0.28 7.28 16 14 C -0.08 -3.20 5.88 -20.03 -0.12 -3.32 16 15 C -0.05 -1.84 9.57 22.49 0.22 -1.62 16 16 C -0.17 -4.69 9.87 22.35 0.22 -4.47 16 17 C 0.24 6.07 6.77 38.36 0.26 6.33 16 18 N -0.85 -14.04 9.08 -51.02 -0.46 -14.51 16 19 C 0.00 0.11 6.50 22.56 0.15 0.25 16 20 O -0.31 -7.90 9.61 -93.71 -0.90 -8.80 16 21 C 0.61 15.43 3.42 113.37 0.39 15.82 16 22 F -0.17 -4.70 15.58 44.97 0.70 -4.00 16 23 F -0.13 -2.76 17.53 44.97 0.79 -1.97 16 24 F -0.17 -4.71 15.55 44.97 0.70 -4.01 16 25 C -0.12 -4.47 7.63 22.57 0.17 -4.30 16 26 N -0.47 -25.56 7.15 -177.69 -1.27 -26.83 16 27 H 0.29 12.43 8.29 -92.71 -0.77 11.66 16 28 H 0.15 6.97 8.06 -2.91 -0.02 6.94 16 29 H 0.14 6.28 6.18 -2.91 -0.02 6.26 16 30 H 0.13 5.73 7.54 -2.91 -0.02 5.71 16 31 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.42 4.52 8.84 -92.71 -0.82 3.70 16 33 H 0.41 5.92 8.17 -92.71 -0.76 5.16 16 34 H 0.13 4.68 3.21 -2.91 -0.01 4.67 16 Total: -1.00 -63.34 312.70 3.83 -59.51 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.34 Total: 27.69 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 4.35 Total: -3.40 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -3.49 Total: -102.01 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.90 Total: -8.80 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 2.19 Total: -9.99 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -63.34 3.83 -59.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244269021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.891 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds