Wall clock time and date at job start Tue Mar 31 2020 14:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47214 * 239.99653 * 3 2 1 5 5 H 1.48500 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46853 * 120.00027 * 3 2 1 7 7 C 1.39999 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99949 * 193.50128 * 7 2 1 9 9 C 1.41021 * 119.99685 * 13.50256 * 7 2 1 10 10 C 1.41335 * 120.54878 * 25.28539 * 9 7 2 11 11 C 1.36549 * 118.41957 * 180.25034 * 10 9 7 12 12 C 1.39990 * 119.46622 * 359.45994 * 11 10 9 13 13 C 1.47787 * 119.46133 * 180.27547 * 12 11 10 14 14 C 1.39633 * 120.15411 * 46.58368 * 13 12 11 15 15 C 1.38288 * 119.85508 * 180.02562 * 14 13 12 16 16 O 1.35980 * 119.91487 * 179.97438 * 15 14 13 17 17 C 1.42902 * 116.99752 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47075 * 59.99998 * 17 16 15 19 19 F 1.39899 * 109.46811 * 180.02562 * 17 16 15 20 20 F 1.39897 * 109.47058 * 299.99805 * 17 16 15 21 21 C 1.38964 * 120.16665 * 359.97438 * 15 14 13 22 22 C 1.38135 * 120.32193 * 0.02562 * 21 15 14 23 23 C 1.38568 * 120.14277 * 359.72432 * 22 21 15 24 24 O 1.35831 * 120.08620 * 180.29873 * 23 22 21 25 25 N 1.33088 * 121.08136 * 0.55537 * 12 11 10 26 26 C 1.31253 * 121.71670 * 359.72032 * 25 12 11 27 27 H 0.97006 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.78670 * 359.97438 * 10 9 7 29 29 H 1.08000 * 120.26587 * 179.72205 * 11 10 9 30 30 H 1.07998 * 120.07202 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.83674 * 180.02562 * 21 15 14 32 32 H 1.08004 * 119.93162 * 180.02562 * 22 21 15 33 33 H 0.96700 * 114.00066 * 270.23005 * 24 23 22 34 34 H 1.07992 * 119.79810 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0081 -1.2125 0.0005 8 1 3.0657 -1.2253 0.2189 9 6 1.3321 -2.4169 -0.2841 10 6 0.1529 -2.4121 -1.0633 11 6 -0.4693 -3.6027 -1.3080 12 6 0.0788 -4.7843 -0.7950 13 6 -0.5913 -6.0735 -1.0649 14 6 -1.0177 -6.3852 -2.3575 15 6 -1.6446 -7.5931 -2.6030 16 8 -2.0609 -7.8977 -3.8612 17 6 -2.7016 -9.1619 -4.0443 18 9 -3.8473 -9.2242 -3.2439 19 9 -3.0620 -9.3117 -5.3878 20 9 -1.8223 -10.1874 -3.6807 21 6 -1.8503 -8.4965 -1.5673 22 6 -1.4313 -8.1954 -0.2859 23 6 -0.7971 -6.9910 -0.0261 24 8 -0.3802 -6.6987 1.2332 25 7 1.1905 -4.7651 -0.0635 26 6 1.8216 -3.6456 0.2035 27 1 -0.4849 0.8401 0.0004 28 1 -0.2488 -1.4881 -1.4522 29 1 -1.3746 -3.6330 -1.8961 30 1 -0.8591 -5.6841 -3.1635 31 1 -2.3401 -9.4385 -1.7651 32 1 -1.5939 -8.9022 0.5143 33 1 -1.0421 -6.2428 1.7708 34 1 2.7211 -3.6659 0.8007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244455843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:03 Heat of formation + Delta-G solvation = -187.450201 kcal Electronic energy + Delta-G solvation = -26364.977690 eV Core-core repulsion = 21812.803406 eV Total energy + Delta-G solvation = -4552.174284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.53998 -48.27142 -48.12345 -40.22326 -38.77986 -37.83391 -35.64295 -34.32469 -31.82671 -30.73678 -29.73005 -28.76246 -25.96204 -25.59429 -23.01094 -22.63890 -21.50411 -21.06654 -19.33892 -19.24329 -19.09696 -17.96802 -17.54234 -16.66674 -15.69997 -15.51447 -15.38821 -15.21971 -14.94453 -14.74775 -14.59553 -14.55035 -14.39597 -14.23087 -14.17856 -13.97233 -13.73118 -13.36905 -12.78459 -12.52187 -12.36653 -11.90127 -11.77982 -11.57787 -11.50635 -11.28564 -11.18012 -10.76467 -10.15296 -9.95504 -9.55590 -8.93042 -8.39643 -8.21657 -8.11117 -7.51611 -7.02001 -4.65930 1.22371 1.39140 1.45611 2.48521 2.76554 2.89626 2.91895 2.94098 3.06685 3.67403 3.70523 3.70659 3.94976 4.41670 4.58293 4.73250 4.89789 5.25628 5.30845 5.51741 5.63738 6.00679 6.07321 6.08636 6.23888 6.35963 6.53829 6.61008 6.74199 6.85639 6.90396 6.97557 7.13642 7.56112 7.70639 7.80497 8.10651 8.26129 8.46319 8.54641 9.51690 9.84329 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.002766 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.350414 B =10121.801917 C =10807.380742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.087 0.913 9 C 0.072 3.928 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.016 4.016 13 C 0.033 3.967 14 C -0.112 4.112 15 C 0.090 3.910 16 O -0.310 6.310 17 C 0.603 3.397 18 F -0.167 7.167 19 F -0.136 7.136 20 F -0.167 7.167 21 C -0.195 4.195 22 C -0.108 4.108 23 C 0.102 3.898 24 O -0.474 6.474 25 N -0.424 5.424 26 C -0.019 4.019 27 H 0.287 0.713 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.381 0.619 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 -10.749 -4.281 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.168 4.168 11 C -0.140 4.140 12 C -0.150 4.150 13 C 0.031 3.969 14 C -0.131 4.131 15 C 0.049 3.951 16 O -0.230 6.230 17 C 0.512 3.488 18 F -0.149 7.149 19 F -0.118 7.118 20 F -0.149 7.149 21 C -0.214 4.214 22 C -0.127 4.127 23 C 0.056 3.944 24 O -0.282 6.282 25 N -0.131 5.131 26 C -0.184 4.184 27 H 0.098 0.902 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.236 0.764 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.083 -11.559 -4.302 13.752 hybrid contribution -0.694 1.505 -0.184 1.668 sum -6.777 -10.054 -4.487 12.928 Atomic orbital electron populations 1.69761 1.07805 1.30131 1.32710 1.26092 0.94927 1.01969 0.91949 0.86180 0.80053 0.79230 0.80343 1.18494 1.20052 1.18605 1.19664 0.97091 0.90533 1.38924 0.89539 1.18654 0.92128 0.93731 0.88815 1.21377 0.98194 0.96897 1.00374 1.21276 0.99224 0.93362 1.00097 1.18438 0.97794 0.89749 1.09027 1.18836 0.94071 0.93073 0.90910 1.20379 1.01199 0.94449 0.97122 1.18479 1.00145 0.96148 0.80378 1.86424 1.72964 1.32530 1.31087 1.19361 0.75924 0.78554 0.74945 1.93288 1.51789 1.95943 1.73916 1.93287 1.91326 1.94891 1.32254 1.93292 1.69378 1.60775 1.91450 1.21182 1.07024 0.99977 0.93255 1.21068 0.97933 0.97297 0.96412 1.18551 0.97170 0.92816 0.85834 1.84884 1.42668 1.79589 1.21078 1.67095 1.05952 1.30903 1.09174 1.22508 1.02424 0.87880 1.05637 0.90161 0.85220 0.88286 0.84311 0.85328 0.84948 0.76363 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.34 10.78 55.55 0.60 -17.74 16 2 C 0.07 1.61 5.24 -17.33 -0.09 1.52 16 3 Si 0.92 16.95 29.58 -169.99 -5.03 11.92 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.43 -10.47 9.07 -37.87 -0.34 -10.81 16 8 H 0.09 1.97 7.88 -52.49 -0.41 1.56 16 9 C 0.07 1.78 5.59 -106.63 -0.60 1.19 16 10 C -0.14 -3.47 8.73 -39.01 -0.34 -3.81 16 11 C -0.12 -2.64 9.36 -39.53 -0.37 -3.01 16 12 C -0.02 -0.35 6.11 -82.76 -0.51 -0.86 16 13 C 0.03 0.62 5.63 -104.77 -0.59 0.03 16 14 C -0.11 -1.90 9.33 -39.04 -0.36 -2.27 16 15 C 0.09 1.38 6.47 -39.29 -0.25 1.12 16 16 O -0.31 -4.34 10.37 -19.68 -0.20 -4.54 16 17 C 0.60 7.09 3.42 101.05 0.35 7.44 16 18 F -0.17 -1.90 15.56 2.25 0.04 -1.87 16 19 F -0.14 -1.49 17.53 2.25 0.04 -1.45 16 20 F -0.17 -1.94 15.55 2.25 0.04 -1.91 16 21 C -0.20 -2.75 8.25 -39.35 -0.32 -3.07 16 22 C -0.11 -1.57 9.97 -39.50 -0.39 -1.96 16 23 C 0.10 1.78 6.68 -38.75 -0.26 1.52 16 24 O -0.47 -8.26 12.34 -19.21 -0.24 -8.50 16 25 N -0.42 -10.16 9.46 -9.12 -0.09 -10.25 16 26 C -0.02 -0.46 10.97 -16.77 -0.18 -0.64 16 27 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.13 3.19 6.14 -52.49 -0.32 2.86 16 29 H 0.10 1.95 7.95 -52.49 -0.42 1.53 16 30 H 0.14 2.26 7.95 -52.49 -0.42 1.84 16 31 H 0.13 1.56 5.07 -52.48 -0.27 1.29 16 32 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.38 5.14 9.06 45.56 0.41 5.55 16 34 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -26.75 315.79 -5.76 -32.51 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -1.40 Total: 10.68 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -4.27 Total: -13.62 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.51 Total: -27.99 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.44 Total: -13.04 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.11 Total: -5.23 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.75 -5.76 -32.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244455843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.938 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds