Wall clock time and date at job start Tue Mar 31 2020 14:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47214 * 239.99653 * 3 2 1 5 5 H 1.48500 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46853 * 120.00027 * 3 2 1 7 7 C 1.39999 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99949 * 193.50128 * 7 2 1 9 9 C 1.41021 * 119.99685 * 13.50256 * 7 2 1 10 10 C 1.41335 * 120.54878 * 25.28539 * 9 7 2 11 11 C 1.36549 * 118.41957 * 180.25034 * 10 9 7 12 12 C 1.39990 * 119.46622 * 359.45994 * 11 10 9 13 13 C 1.47787 * 119.46133 * 180.27547 * 12 11 10 14 14 C 1.39633 * 120.15411 * 46.58368 * 13 12 11 15 15 C 1.38288 * 119.85508 * 180.02562 * 14 13 12 16 16 O 1.35980 * 119.91487 * 179.97438 * 15 14 13 17 17 C 1.42902 * 116.99752 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47075 * 59.99998 * 17 16 15 19 19 F 1.39899 * 109.46811 * 180.02562 * 17 16 15 20 20 F 1.39897 * 109.47058 * 299.99805 * 17 16 15 21 21 C 1.38964 * 120.16665 * 359.97438 * 15 14 13 22 22 C 1.38135 * 120.32193 * 0.02562 * 21 15 14 23 23 C 1.38568 * 120.14277 * 359.72432 * 22 21 15 24 24 O 1.35831 * 120.08620 * 180.29873 * 23 22 21 25 25 N 1.33088 * 121.08136 * 0.55537 * 12 11 10 26 26 C 1.31253 * 121.71670 * 359.72032 * 25 12 11 27 27 H 0.97006 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.78670 * 359.97438 * 10 9 7 29 29 H 1.08000 * 120.26587 * 179.72205 * 11 10 9 30 30 H 1.07998 * 120.07202 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.83674 * 180.02562 * 21 15 14 32 32 H 1.08004 * 119.93162 * 180.02562 * 22 21 15 33 33 H 0.96700 * 114.00066 * 270.23005 * 24 23 22 34 34 H 1.07992 * 119.79810 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0081 -1.2125 0.0005 8 1 3.0657 -1.2253 0.2189 9 6 1.3321 -2.4169 -0.2841 10 6 0.1529 -2.4121 -1.0633 11 6 -0.4693 -3.6027 -1.3080 12 6 0.0788 -4.7843 -0.7950 13 6 -0.5913 -6.0735 -1.0649 14 6 -1.0177 -6.3852 -2.3575 15 6 -1.6446 -7.5931 -2.6030 16 8 -2.0609 -7.8977 -3.8612 17 6 -2.7016 -9.1619 -4.0443 18 9 -3.8473 -9.2242 -3.2439 19 9 -3.0620 -9.3117 -5.3878 20 9 -1.8223 -10.1874 -3.6807 21 6 -1.8503 -8.4965 -1.5673 22 6 -1.4313 -8.1954 -0.2859 23 6 -0.7971 -6.9910 -0.0261 24 8 -0.3802 -6.6987 1.2332 25 7 1.1905 -4.7651 -0.0635 26 6 1.8216 -3.6456 0.2035 27 1 -0.4849 0.8401 0.0004 28 1 -0.2488 -1.4881 -1.4522 29 1 -1.3746 -3.6330 -1.8961 30 1 -0.8591 -5.6841 -3.1635 31 1 -2.3401 -9.4385 -1.7651 32 1 -1.5939 -8.9022 0.5143 33 1 -1.0421 -6.2428 1.7708 34 1 2.7211 -3.6659 0.8007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244455843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:02 Heat of formation + Delta-G solvation = -203.236854 kcal Electronic energy + Delta-G solvation = -26365.662250 eV Core-core repulsion = 21812.803406 eV Total energy + Delta-G solvation = -4552.858844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.46896 -49.18327 -49.05240 -41.47431 -40.28697 -39.29776 -36.93077 -36.04234 -33.31803 -32.54349 -31.18358 -30.17892 -27.38471 -26.86163 -24.46023 -24.08377 -23.08527 -22.55679 -20.54057 -20.18397 -20.12255 -19.32563 -19.25219 -17.92469 -17.25206 -16.90767 -16.72098 -16.28641 -16.15095 -16.03047 -15.84265 -15.59050 -15.50658 -15.44866 -15.31056 -15.15248 -14.95644 -14.52790 -14.36149 -14.13517 -13.75251 -13.55053 -13.40139 -13.22112 -12.89685 -12.71789 -12.61328 -12.25515 -11.76238 -11.42399 -11.20801 -10.31269 -10.22755 -9.92401 -9.56719 -9.14458 -8.72579 -6.48201 -0.11164 0.14711 0.43260 0.81682 1.11145 1.39842 1.51183 1.54185 1.76575 2.16197 2.40357 2.71371 2.74681 2.97056 3.33608 3.58096 3.61445 3.67980 3.93347 4.07230 4.25995 4.40787 4.69443 4.80288 4.80949 4.88021 4.98601 5.02624 5.10465 5.22924 5.32285 5.46786 5.72577 5.81347 5.91026 5.98959 6.45014 6.68064 6.73443 6.90889 7.69999 8.16816 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.002766 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.350414 B =10121.801917 C =10807.380742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.089 0.911 9 C 0.047 3.953 10 C -0.159 4.159 11 C -0.122 4.122 12 C -0.008 4.008 13 C -0.002 4.002 14 C -0.114 4.114 15 C 0.092 3.908 16 O -0.318 6.318 17 C 0.609 3.391 18 F -0.162 7.162 19 F -0.130 7.130 20 F -0.163 7.163 21 C -0.180 4.180 22 C -0.097 4.097 23 C 0.095 3.905 24 O -0.490 6.490 25 N -0.440 5.440 26 C -0.039 4.039 27 H 0.295 0.705 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.396 0.604 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -12.084 -4.627 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.108 0.892 9 C 0.042 3.958 10 C -0.185 4.185 11 C -0.142 4.142 12 C -0.144 4.144 13 C -0.003 4.003 14 C -0.134 4.134 15 C 0.050 3.950 16 O -0.238 6.238 17 C 0.518 3.482 18 F -0.144 7.144 19 F -0.111 7.111 20 F -0.145 7.145 21 C -0.198 4.198 22 C -0.115 4.115 23 C 0.049 3.951 24 O -0.301 6.301 25 N -0.147 5.147 26 C -0.203 4.203 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.253 0.747 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.058 -12.908 -4.641 15.426 hybrid contribution -0.539 1.669 -0.145 1.759 sum -7.596 -11.240 -4.786 14.385 Atomic orbital electron populations 1.69799 1.09140 1.31442 1.33085 1.26920 0.95627 1.04891 0.90859 0.85100 0.78689 0.74829 0.80305 1.18282 1.19045 1.18125 1.19919 0.97504 0.91377 1.40705 0.89244 1.18915 0.92858 0.94432 0.89582 1.21409 0.98695 0.97309 1.01041 1.21515 0.99779 0.92871 1.00076 1.18935 0.96896 0.91350 1.07235 1.18798 0.96305 0.92662 0.92578 1.20313 1.01279 0.95409 0.96401 1.18420 0.99674 0.95718 0.81225 1.86401 1.73120 1.33869 1.30414 1.19229 0.75857 0.77819 0.75275 1.93303 1.51428 1.95846 1.73794 1.93310 1.91213 1.94740 1.31825 1.93304 1.69351 1.60434 1.91438 1.21516 1.05424 1.00296 0.92591 1.21324 0.96326 0.96407 0.97465 1.18740 0.97530 0.93471 0.85359 1.84833 1.43989 1.79914 1.21389 1.67146 1.06746 1.30750 1.10055 1.22657 1.03065 0.88116 1.06420 0.89379 0.86134 0.86061 0.84369 0.82812 0.81715 0.74709 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.93 10.78 21.84 0.24 -38.69 16 2 C 0.03 1.59 5.24 85.27 0.45 2.04 16 3 Si 0.99 34.81 29.58 68.60 2.03 36.84 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.27 -8.84 7.11 99.48 0.71 -8.14 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 7 C -0.47 -23.34 9.07 23.38 0.21 -23.13 16 8 H 0.09 4.23 7.88 -2.91 -0.02 4.21 16 9 C 0.05 2.43 5.59 -21.17 -0.12 2.31 16 10 C -0.16 -8.00 8.73 22.64 0.20 -7.80 16 11 C -0.12 -5.54 9.36 22.30 0.21 -5.33 16 12 C -0.01 -0.38 6.11 41.91 0.26 -0.13 16 13 C 0.00 -0.07 5.63 -19.96 -0.11 -0.18 16 14 C -0.11 -3.77 9.33 22.62 0.21 -3.56 16 15 C 0.09 2.58 6.47 22.46 0.15 2.72 16 16 O -0.32 -8.12 10.37 -93.33 -0.97 -9.08 16 17 C 0.61 12.51 3.42 113.37 0.39 12.90 16 18 F -0.16 -3.13 15.56 44.97 0.70 -2.43 16 19 F -0.13 -2.50 17.53 44.97 0.79 -1.71 16 20 F -0.16 -3.26 15.55 44.97 0.70 -2.57 16 21 C -0.18 -4.42 8.25 22.42 0.18 -4.23 16 22 C -0.10 -2.49 9.97 22.32 0.22 -2.26 16 23 C 0.09 3.15 6.68 22.81 0.15 3.30 16 24 O -0.49 -16.67 12.34 -91.65 -1.13 -17.80 16 25 N -0.44 -21.56 9.46 -182.76 -1.73 -23.29 16 26 C -0.04 -1.95 10.97 85.45 0.94 -1.01 16 27 H 0.30 12.72 8.30 -92.70 -0.77 11.95 16 28 H 0.12 6.18 6.14 -2.91 -0.02 6.16 16 29 H 0.12 4.80 7.95 -2.91 -0.02 4.78 16 30 H 0.14 4.44 7.95 -2.91 -0.02 4.42 16 31 H 0.15 3.03 5.07 -2.91 -0.01 3.01 16 32 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.40 10.41 9.06 -74.06 -0.67 9.73 16 34 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -58.31 315.79 4.49 -53.82 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.53 Total: 29.28 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.33 Total: -24.37 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.49 Total: -61.98 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -2.10 Total: -26.88 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 2.19 Total: -6.71 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -58.31 4.49 -53.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244455843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.414 kcal (2) G-P(sol) polarization free energy of solvation -58.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds