Wall clock time and date at job start Tue Mar 31 2020 14:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86805 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46654 * 269.99931 * 3 2 1 5 5 H 1.48497 * 109.47327 * 29.99807 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00004 * 3 2 1 7 7 C 1.40037 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 197.29435 * 7 2 1 9 9 C 1.41538 * 120.00019 * 17.29620 * 7 2 1 10 10 C 1.41175 * 120.97899 * 23.17175 * 9 7 2 11 11 C 1.37693 * 119.09586 * 180.02562 * 10 9 7 12 12 N 1.31954 * 121.16575 * 359.72720 * 11 10 9 13 13 C 1.32846 * 122.19242 * 0.56597 * 12 11 10 14 14 C 1.48188 * 119.62648 * 179.71083 * 13 12 11 15 15 C 1.39409 * 120.10008 * 179.73269 * 14 13 12 16 16 C 1.37837 * 119.98449 * 180.02562 * 15 14 13 17 17 C 1.38959 * 120.19142 * 359.97438 * 16 15 14 18 18 O 1.35842 * 119.90277 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99719 * 359.97438 * 18 17 16 20 20 F 1.39895 * 109.47232 * 60.00276 * 19 18 17 21 21 F 1.39905 * 109.46867 * 180.02562 * 19 18 17 22 22 F 1.39898 * 109.46926 * 299.99829 * 19 18 17 23 23 C 1.38683 * 120.19790 * 0.26985 * 17 16 15 24 24 C 1.38461 * 120.01349 * 359.45536 * 23 17 16 25 25 O 1.35813 * 120.09920 * 180.26863 * 24 23 17 26 26 C 1.39018 * 120.74792 * 359.43366 * 13 12 11 27 27 H 0.97006 * 119.99810 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.45282 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.41619 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.01082 * 0.03654 * 15 14 13 31 31 H 1.08000 * 119.90999 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.99608 * 179.72614 * 23 17 16 33 33 H 0.96698 * 113.99736 * 270.28013 * 25 24 23 34 34 H 1.08002 * 120.61592 * 180.29890 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0464 -1.4002 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2338 0.2786 9 6 1.3479 -2.4110 -0.3634 10 6 0.1900 -2.3867 -1.1706 11 6 -0.4211 -3.5756 -1.5008 12 7 0.0599 -4.7303 -1.0808 13 6 1.1424 -4.8096 -0.3149 14 6 1.6296 -6.1366 0.1298 15 6 2.7679 -6.2316 0.9291 16 6 3.2193 -7.4672 1.3409 17 6 2.5426 -8.6202 0.9621 18 8 2.9923 -9.8348 1.3717 19 6 4.1650 -9.8508 2.1880 20 9 3.9280 -9.1233 3.3591 21 9 4.4866 -11.1722 2.5164 22 9 5.2289 -9.2728 1.4871 23 6 1.4123 -8.5350 0.1629 24 6 0.9483 -7.2978 -0.2508 25 8 -0.1615 -7.2121 -1.0290 26 6 1.8267 -3.6622 0.0695 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2111 -1.4484 -1.5244 29 1 -1.3069 -3.5631 -2.1184 30 1 3.2958 -5.3374 1.2257 31 1 4.1009 -7.5393 1.9604 32 1 0.8915 -9.4336 -0.1332 33 1 0.0202 -7.2448 -1.9781 34 1 2.7094 -3.7294 0.6882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244463153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:34 Heat of formation + Delta-G solvation = -180.771774 kcal Electronic energy + Delta-G solvation = -26408.938797 eV Core-core repulsion = 21857.054112 eV Total energy + Delta-G solvation = -4551.884685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.58425 -48.32202 -48.16126 -40.34742 -38.87034 -37.74178 -35.83939 -34.21747 -31.63734 -30.81385 -29.95271 -28.04778 -26.17768 -25.84479 -23.37980 -22.73934 -21.19444 -20.87251 -19.85677 -19.28625 -19.11982 -17.84499 -17.34231 -16.20359 -15.94805 -15.70575 -15.34702 -15.20686 -14.97661 -14.66371 -14.60088 -14.53986 -14.46778 -14.31852 -14.14943 -13.95871 -13.66108 -13.44231 -13.17273 -12.66742 -12.55211 -11.89938 -11.60359 -11.54952 -11.37438 -11.26670 -10.96077 -10.38366 -10.30416 -9.90842 -9.51815 -8.89464 -8.69063 -8.14050 -7.99932 -7.23225 -6.92904 -4.68612 1.04902 1.32296 1.37177 2.66596 2.70552 2.72442 2.97377 3.00450 3.15413 3.64247 3.71830 3.78621 3.91303 4.51277 4.60324 4.69477 4.92657 5.02603 5.14862 5.51999 5.59537 5.81728 6.02494 6.07486 6.25771 6.35492 6.46282 6.67378 6.79476 6.84065 7.00653 7.02055 7.23566 7.36305 7.75079 7.99002 8.09061 8.34843 8.63057 8.64619 9.48410 9.97921 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002982 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.487515 B = 9386.143231 C =10586.954125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.125 3.875 10 C -0.206 4.206 11 C 0.084 3.916 12 N -0.541 5.541 13 C 0.149 3.851 14 C -0.052 4.052 15 C -0.057 4.057 16 C -0.201 4.201 17 C 0.103 3.897 18 O -0.311 6.311 19 C 0.604 3.396 20 F -0.165 7.165 21 F -0.136 7.136 22 F -0.165 7.165 23 C -0.160 4.160 24 C 0.169 3.831 25 O -0.460 6.460 26 C -0.252 4.252 27 H 0.284 0.716 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.390 0.610 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -13.111 1.315 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.117 3.883 10 C -0.228 4.228 11 C -0.068 4.068 12 N -0.255 5.255 13 C 0.015 3.985 14 C -0.053 4.053 15 C -0.076 4.076 16 C -0.220 4.220 17 C 0.061 3.939 18 O -0.232 6.232 19 C 0.513 3.487 20 F -0.147 7.147 21 F -0.117 7.117 22 F -0.147 7.147 23 C -0.179 4.179 24 C 0.122 3.878 25 O -0.270 6.270 26 C -0.275 4.275 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.247 0.753 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.214 -13.862 1.574 14.894 hybrid contribution 1.240 1.630 0.149 2.053 sum 6.455 -12.233 1.723 13.938 Atomic orbital electron populations 1.69764 1.07756 1.29730 1.33634 1.25976 0.94769 1.01627 0.91846 0.86228 0.80487 0.80091 0.79501 1.19077 1.20126 1.18433 1.19612 0.98105 0.90836 1.40168 0.89966 1.17742 0.90838 0.91958 0.87754 1.22323 1.00007 0.98368 1.02151 1.22018 0.98136 0.88461 0.98201 1.67460 1.13391 1.28550 1.16111 1.18906 0.93137 0.89824 0.96622 1.19364 0.94430 0.92927 0.98615 1.21010 0.94823 0.97040 0.94744 1.21337 1.02611 0.92164 1.05852 1.18399 0.95811 0.81098 0.98602 1.86355 1.40489 1.31519 1.64793 1.19340 0.78198 0.74573 0.76591 1.93307 1.93981 1.77686 1.49696 1.93291 1.91793 1.34660 1.91985 1.93302 1.58005 1.84442 1.78983 1.20514 0.96023 0.98734 1.02635 1.18074 0.86287 0.89439 0.93984 1.84805 1.26342 1.95338 1.20516 1.21852 1.04339 0.92926 1.08427 0.90460 0.85525 0.85937 0.84008 0.85006 0.84216 0.75296 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.18 10.90 55.55 0.61 -18.58 16 2 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 3 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.46 -11.42 9.12 -37.65 -0.34 -11.77 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.17 5.61 -106.56 -0.60 2.57 16 10 C -0.21 -5.11 8.80 -38.67 -0.34 -5.45 16 11 C 0.08 1.93 11.15 -17.70 -0.20 1.73 16 12 N -0.54 -12.26 8.10 -9.96 -0.08 -12.34 16 13 C 0.15 3.31 6.73 -83.05 -0.56 2.75 16 14 C -0.05 -0.97 5.89 -104.75 -0.62 -1.58 16 15 C -0.06 -0.93 9.40 -39.29 -0.37 -1.30 16 16 C -0.20 -2.87 8.23 -39.46 -0.32 -3.20 16 17 C 0.10 1.46 6.48 -39.15 -0.25 1.21 16 18 O -0.31 -3.98 10.37 -19.25 -0.20 -4.18 16 19 C 0.60 6.76 3.42 101.05 0.35 7.10 16 20 F -0.16 -1.88 15.55 2.25 0.04 -1.85 16 21 F -0.14 -1.39 17.53 2.25 0.04 -1.35 16 22 F -0.17 -1.84 15.55 2.25 0.04 -1.81 16 23 C -0.16 -2.31 9.91 -39.33 -0.39 -2.70 16 24 C 0.17 2.83 6.70 -38.87 -0.26 2.57 16 25 O -0.46 -7.64 11.31 -19.15 -0.22 -7.86 16 26 C -0.25 -5.88 9.25 -38.33 -0.35 -6.23 16 27 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 28 H 0.13 3.19 6.16 -52.49 -0.32 2.87 16 29 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 30 H 0.14 2.17 6.17 -52.49 -0.32 1.84 16 31 H 0.13 1.65 5.07 -52.49 -0.27 1.38 16 32 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 33 H 0.39 5.03 9.06 45.56 0.41 5.44 16 34 H 0.10 2.20 6.18 -52.49 -0.32 1.87 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -27.36 311.07 -5.69 -33.06 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -1.22 Total: 10.20 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -4.35 Total: -12.53 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.52 Total: -30.92 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.42 Total: -12.04 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.36 -5.69 -33.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244463153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.713 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds