Wall clock time and date at job start Tue Mar 31 2020 14:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86805 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46654 * 269.99931 * 3 2 1 5 5 H 1.48497 * 109.47327 * 29.99807 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00004 * 3 2 1 7 7 C 1.40037 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 197.29435 * 7 2 1 9 9 C 1.41538 * 120.00019 * 17.29620 * 7 2 1 10 10 C 1.41175 * 120.97899 * 23.17175 * 9 7 2 11 11 C 1.37693 * 119.09586 * 180.02562 * 10 9 7 12 12 N 1.31954 * 121.16575 * 359.72720 * 11 10 9 13 13 C 1.32846 * 122.19242 * 0.56597 * 12 11 10 14 14 C 1.48188 * 119.62648 * 179.71083 * 13 12 11 15 15 C 1.39409 * 120.10008 * 179.73269 * 14 13 12 16 16 C 1.37837 * 119.98449 * 180.02562 * 15 14 13 17 17 C 1.38959 * 120.19142 * 359.97438 * 16 15 14 18 18 O 1.35842 * 119.90277 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99719 * 359.97438 * 18 17 16 20 20 F 1.39895 * 109.47232 * 60.00276 * 19 18 17 21 21 F 1.39905 * 109.46867 * 180.02562 * 19 18 17 22 22 F 1.39898 * 109.46926 * 299.99829 * 19 18 17 23 23 C 1.38683 * 120.19790 * 0.26985 * 17 16 15 24 24 C 1.38461 * 120.01349 * 359.45536 * 23 17 16 25 25 O 1.35813 * 120.09920 * 180.26863 * 24 23 17 26 26 C 1.39018 * 120.74792 * 359.43366 * 13 12 11 27 27 H 0.97006 * 119.99810 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.45282 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.41619 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.01082 * 0.03654 * 15 14 13 31 31 H 1.08000 * 119.90999 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.99608 * 179.72614 * 23 17 16 33 33 H 0.96698 * 113.99736 * 270.28013 * 25 24 23 34 34 H 1.08002 * 120.61592 * 180.29890 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0464 -1.4002 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2338 0.2786 9 6 1.3479 -2.4110 -0.3634 10 6 0.1900 -2.3867 -1.1706 11 6 -0.4211 -3.5756 -1.5008 12 7 0.0599 -4.7303 -1.0808 13 6 1.1424 -4.8096 -0.3149 14 6 1.6296 -6.1366 0.1298 15 6 2.7679 -6.2316 0.9291 16 6 3.2193 -7.4672 1.3409 17 6 2.5426 -8.6202 0.9621 18 8 2.9923 -9.8348 1.3717 19 6 4.1650 -9.8508 2.1880 20 9 3.9280 -9.1233 3.3591 21 9 4.4866 -11.1722 2.5164 22 9 5.2289 -9.2728 1.4871 23 6 1.4123 -8.5350 0.1629 24 6 0.9483 -7.2978 -0.2508 25 8 -0.1615 -7.2121 -1.0290 26 6 1.8267 -3.6622 0.0695 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2111 -1.4484 -1.5244 29 1 -1.3069 -3.5631 -2.1184 30 1 3.2958 -5.3374 1.2257 31 1 4.1009 -7.5393 1.9604 32 1 0.8915 -9.4336 -0.1332 33 1 0.0202 -7.2448 -1.9781 34 1 2.7094 -3.7294 0.6882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244463153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:33 Heat of formation + Delta-G solvation = -196.773264 kcal Electronic energy + Delta-G solvation = -26409.632674 eV Core-core repulsion = 21857.054112 eV Total energy + Delta-G solvation = -4552.578562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.47949 -49.19213 -49.06798 -41.55434 -40.31165 -39.20339 -37.08455 -36.00082 -33.08755 -32.62266 -31.23771 -29.50540 -27.89312 -26.98904 -24.77442 -24.04817 -22.81663 -22.41042 -20.97118 -20.19276 -20.09251 -19.47241 -18.59382 -17.58259 -17.28231 -17.10236 -16.73648 -16.31893 -16.12130 -15.96690 -15.77070 -15.72169 -15.49903 -15.44629 -15.24769 -15.11829 -14.99400 -14.72987 -14.41880 -14.34452 -14.22201 -13.36608 -13.15778 -12.98195 -12.84269 -12.73011 -12.51728 -11.96457 -11.77777 -11.53690 -11.25512 -10.30978 -9.98344 -9.94273 -9.77460 -8.84581 -8.68233 -6.57036 -0.29195 0.12653 0.38414 0.91930 1.09712 1.38898 1.52275 1.56626 1.75093 2.17352 2.41476 2.72393 2.81931 2.95250 3.33956 3.48290 3.57270 3.77097 3.79198 3.99807 4.24088 4.32996 4.69694 4.76775 4.90969 4.97025 4.97309 5.05563 5.14111 5.21862 5.37417 5.45590 5.60284 5.73067 5.90869 6.18632 6.50690 6.78761 6.79887 6.94445 7.69282 8.23156 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002982 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.487515 B = 9386.143231 C =10586.954125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.098 3.902 10 C -0.234 4.234 11 C 0.083 3.917 12 N -0.543 5.543 13 C 0.151 3.849 14 C -0.090 4.090 15 C -0.054 4.054 16 C -0.198 4.198 17 C 0.117 3.883 18 O -0.310 6.310 19 C 0.608 3.392 20 F -0.164 7.164 21 F -0.127 7.127 22 F -0.163 7.163 23 C -0.154 4.154 24 C 0.170 3.830 25 O -0.474 6.474 26 C -0.274 4.274 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.404 0.596 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -14.355 1.802 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.256 4.256 11 C -0.070 4.070 12 N -0.258 5.258 13 C 0.017 3.983 14 C -0.092 4.092 15 C -0.072 4.072 16 C -0.216 4.216 17 C 0.074 3.926 18 O -0.230 6.230 19 C 0.518 3.482 20 F -0.146 7.146 21 F -0.109 7.109 22 F -0.145 7.145 23 C -0.173 4.173 24 C 0.123 3.877 25 O -0.286 6.286 26 C -0.296 4.296 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.182 0.818 33 H 0.263 0.737 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.215 -15.132 2.058 16.488 hybrid contribution 0.947 1.788 0.039 2.024 sum 7.163 -13.344 2.097 15.290 Atomic orbital electron populations 1.69815 1.09199 1.31110 1.33854 1.26845 0.95495 1.04755 0.90774 0.85121 0.79082 0.75415 0.79651 1.18544 1.19220 1.17965 1.19900 0.98461 0.91898 1.41664 0.89815 1.18134 0.91462 0.93113 0.88222 1.22293 1.00957 0.98577 1.03763 1.22401 0.98567 0.88117 0.97896 1.67598 1.13709 1.28041 1.16442 1.19426 0.92290 0.91380 0.95192 1.19354 0.96516 0.91857 1.01447 1.21057 0.93998 0.98067 0.94126 1.21486 1.03082 0.91417 1.05652 1.18462 0.95262 0.81525 0.97336 1.86357 1.41159 1.30629 1.64898 1.19247 0.77728 0.74922 0.76323 1.93315 1.93961 1.77734 1.49615 1.93319 1.91614 1.34070 1.91850 1.93314 1.57767 1.84446 1.78953 1.20619 0.96016 0.98606 1.02042 1.18144 0.86000 0.89694 0.93862 1.84752 1.26661 1.95412 1.21735 1.22056 1.05336 0.92859 1.09397 0.89661 0.86754 0.83536 0.83746 0.83112 0.81752 0.73659 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.82 10.90 21.84 0.24 -40.58 16 2 C 0.04 1.85 5.20 85.29 0.44 2.30 16 3 Si 0.99 36.12 29.59 68.60 2.03 38.15 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 7 C -0.49 -25.22 9.12 23.52 0.21 -25.01 16 8 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 9 C 0.10 5.18 5.61 -21.12 -0.12 5.06 16 10 C -0.23 -12.02 8.80 22.86 0.20 -11.81 16 11 C 0.08 3.86 11.15 84.55 0.94 4.80 16 12 N -0.54 -24.86 8.10 -185.43 -1.50 -26.36 16 13 C 0.15 6.80 6.73 41.82 0.28 7.08 16 14 C -0.09 -3.32 5.89 -19.94 -0.12 -3.43 16 15 C -0.05 -1.68 9.40 22.46 0.21 -1.47 16 16 C -0.20 -5.20 8.23 22.35 0.18 -5.01 16 17 C 0.12 2.98 6.48 22.55 0.15 3.13 16 18 O -0.31 -6.94 10.37 -91.78 -0.95 -7.89 16 19 C 0.61 11.82 3.42 113.37 0.39 12.21 16 20 F -0.16 -3.30 15.55 44.97 0.70 -2.60 16 21 F -0.13 -2.25 17.53 44.97 0.79 -1.46 16 22 F -0.16 -3.16 15.55 44.97 0.70 -2.47 16 23 C -0.15 -4.04 9.91 22.43 0.22 -3.81 16 24 C 0.17 5.46 6.70 22.73 0.15 5.61 16 25 O -0.47 -15.20 11.31 -91.45 -1.03 -16.23 16 26 C -0.27 -13.13 9.25 23.08 0.21 -12.92 16 27 H 0.29 13.15 8.29 -92.70 -0.77 12.38 16 28 H 0.11 6.04 6.16 -2.91 -0.02 6.03 16 29 H 0.15 5.92 8.06 -2.91 -0.02 5.89 16 30 H 0.14 4.35 6.17 -2.91 -0.02 4.33 16 31 H 0.15 3.35 5.07 -2.91 -0.01 3.34 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.40 10.01 9.06 -74.06 -0.67 9.34 16 34 H 0.12 5.07 6.18 -2.91 -0.02 5.05 16 Total: -1.00 -59.26 311.07 4.87 -54.39 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.54 Total: 28.31 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 3.36 Total: -23.27 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -1.26 Total: -66.94 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.99 Total: -24.12 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 2.19 Total: -6.52 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -59.26 4.87 -54.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244463153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.382 kcal (2) G-P(sol) polarization free energy of solvation -59.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds