Wall clock time and date at job start Tue Mar 31 2020 14:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47252 * 274.98896 * 3 2 1 5 5 H 1.48496 * 109.47172 * 34.99115 * 3 2 1 6 6 H 1.48498 * 109.46775 * 154.98782 * 3 2 1 7 7 C 1.40041 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99892 * 186.30268 * 7 2 1 9 9 C 1.40885 * 120.00465 * 6.30733 * 7 2 1 10 10 C 1.40939 * 119.67039 * 173.66759 * 9 7 2 11 11 C 1.36575 * 119.27118 * 179.97438 * 10 9 7 12 12 C 1.40408 * 118.59852 * 0.02562 * 11 10 9 13 13 C 1.47706 * 120.35648 * 180.02562 * 12 11 10 14 14 C 1.39746 * 120.12534 * 309.70568 * 13 12 11 15 15 C 1.37684 * 119.95953 * 179.73704 * 14 13 12 16 16 C 1.39127 * 120.22130 * 0.51333 * 15 14 13 17 17 O 1.35794 * 119.87222 * 179.73966 * 16 15 14 18 18 C 1.42900 * 116.99855 * 0.02562 * 17 16 15 19 19 F 1.39895 * 109.47254 * 59.99795 * 18 17 16 20 20 F 1.39898 * 109.47252 * 179.97438 * 18 17 16 21 21 F 1.39905 * 109.46984 * 299.99583 * 18 17 16 22 22 C 1.38758 * 120.25769 * 359.75945 * 16 15 14 23 23 C 1.38370 * 120.03749 * 359.97438 * 22 16 15 24 24 O 1.35765 * 120.11134 * 180.02562 * 23 22 16 25 25 C 1.40235 * 119.29381 * 359.97438 * 12 11 10 26 26 N 1.31159 * 120.66332 * 0.02562 * 25 12 11 27 27 H 0.96998 * 120.00244 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.36307 * 359.96255 * 10 9 7 29 29 H 1.07993 * 120.69971 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.01875 * 359.96917 * 14 13 12 31 31 H 1.08001 * 119.88424 * 180.22682 * 15 14 13 32 32 H 1.08009 * 119.97966 * 180.02562 * 22 16 15 33 33 H 0.96702 * 113.99976 * 269.97731 * 24 23 22 34 34 H 1.07999 * 119.66696 * 180.28028 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3835 2.1074 -1.3948 5 1 1.4957 2.6199 0.8028 6 1 3.5877 1.4120 0.5920 7 6 2.0077 -1.2128 -0.0005 8 1 3.0828 -1.2157 0.1021 9 6 1.3097 -2.4292 -0.1351 10 6 2.0278 -3.6345 -0.2694 11 6 1.3429 -4.8090 -0.3988 12 6 -0.0607 -4.7726 -0.3939 13 6 -0.8403 -6.0196 -0.5307 14 6 -0.5552 -6.9151 -1.5650 15 6 -1.2805 -8.0792 -1.6861 16 6 -2.3045 -8.3629 -0.7880 17 8 -3.0187 -9.5106 -0.9172 18 6 -2.6635 -10.3777 -1.9960 19 9 -1.3309 -10.7784 -1.8529 20 9 -3.4929 -11.5043 -1.9813 21 9 -2.8188 -9.6997 -3.2099 22 6 -2.5990 -7.4775 0.2391 23 6 -1.8733 -6.3071 0.3740 24 8 -2.1599 -5.4401 1.3786 25 6 -0.7146 -3.5396 -0.2565 26 7 -0.0285 -2.4285 -0.1342 27 1 -0.4850 0.8400 0.0004 28 1 3.1077 -3.6293 -0.2702 29 1 1.8698 -5.7458 -0.5036 30 1 0.2359 -6.6959 -2.2666 31 1 -1.0567 -8.7721 -2.4837 32 1 -3.3946 -7.7025 0.9340 33 1 -2.8182 -4.7713 1.1452 34 1 -1.7940 -3.5051 -0.2474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244466245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:40 Heat of formation + Delta-G solvation = -179.151041 kcal Electronic energy + Delta-G solvation = -26317.046729 eV Core-core repulsion = 21765.232324 eV Total energy + Delta-G solvation = -4551.814405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.57329 -48.31228 -48.15045 -40.27737 -38.81707 -37.76679 -35.89851 -33.88195 -31.68102 -30.60653 -30.08304 -28.59663 -26.34683 -25.27399 -22.89336 -22.58904 -21.73466 -20.76778 -19.85621 -19.27443 -19.13381 -17.66462 -17.52745 -16.34855 -16.09656 -15.73564 -15.38789 -15.29573 -14.97045 -14.69403 -14.60574 -14.49297 -14.31789 -14.28118 -14.12792 -14.06178 -13.59336 -13.57050 -12.93453 -12.55812 -12.28227 -11.95954 -11.68324 -11.36883 -11.28682 -11.17728 -11.03026 -10.74043 -10.31135 -10.00140 -9.53951 -8.78739 -8.59761 -8.29145 -7.71882 -7.38275 -6.59932 -4.66852 1.21503 1.36569 1.40852 2.58525 2.72875 2.98268 2.99037 3.02447 3.05352 3.65943 3.67760 3.80417 3.91441 4.46897 4.56652 4.75644 4.95316 5.21585 5.37109 5.59135 5.76824 5.86445 6.01650 6.03274 6.16107 6.35906 6.46308 6.56013 6.66878 6.79525 6.93267 6.97255 7.22779 7.43880 7.60514 7.87340 7.94460 8.04556 8.45872 8.74512 9.93467 10.10699 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.002563 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.860416 B =10923.574314 C =11250.950137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.087 0.913 9 C 0.254 3.746 10 C -0.271 4.271 11 C -0.033 4.033 12 C -0.275 4.275 13 C -0.010 4.010 14 C -0.078 4.078 15 C -0.190 4.190 16 C 0.081 3.919 17 O -0.312 6.312 18 C 0.604 3.396 19 F -0.166 7.166 20 F -0.137 7.137 21 F -0.166 7.166 22 C -0.144 4.144 23 C 0.128 3.872 24 O -0.481 6.481 25 C 0.163 3.837 26 N -0.487 5.487 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.389 0.611 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -13.127 -3.399 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.294 4.294 11 C -0.056 4.056 12 C -0.280 4.280 13 C -0.011 4.011 14 C -0.097 4.097 15 C -0.208 4.208 16 C 0.040 3.960 17 O -0.232 6.232 18 C 0.513 3.487 19 F -0.148 7.148 20 F -0.118 7.118 21 F -0.148 7.148 22 C -0.163 4.163 23 C 0.083 3.917 24 O -0.291 6.291 25 C -0.006 4.006 26 N -0.199 5.199 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.246 0.754 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.871 -12.528 -2.890 14.134 hybrid contribution 0.519 -0.200 -0.626 0.837 sum -5.352 -12.728 -3.516 14.248 Atomic orbital electron populations 1.70132 1.07347 1.28280 1.26485 1.26171 0.95000 1.01454 0.93633 0.86243 0.80577 0.80436 0.79264 1.19277 1.19891 1.18327 1.19728 0.95023 0.89730 1.39738 0.89463 1.18627 0.88420 0.91882 0.87988 1.21391 0.98884 0.93787 1.15337 1.20557 0.92643 0.96668 0.95770 1.18781 0.93042 0.91947 1.24249 1.19348 0.95019 0.94744 0.92030 1.21011 0.99029 0.92368 0.97283 1.21359 0.98161 1.00607 1.00714 1.18327 0.94316 0.84985 0.98414 1.86329 1.58393 1.31657 1.46824 1.19339 0.74453 0.77677 0.77241 1.93296 1.35305 1.91007 1.95234 1.93284 1.72474 1.49978 1.96078 1.93300 1.95195 1.80044 1.46277 1.20411 1.02928 0.94562 0.98444 1.18198 0.95168 0.89946 0.88387 1.84803 1.64164 1.44699 1.35433 1.22505 0.98047 0.87833 0.92170 1.68770 1.07342 1.25892 1.17876 0.91244 0.88134 0.88607 0.84926 0.85421 0.84511 0.75397 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.67 11.47 55.55 0.64 -17.03 16 2 C 0.06 1.55 5.49 -17.33 -0.10 1.46 16 3 Si 0.91 17.54 29.57 -169.99 -5.03 12.52 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.41 -10.46 9.11 -37.91 -0.35 -10.81 16 8 H 0.09 2.06 7.86 -52.48 -0.41 1.65 16 9 C 0.25 6.61 6.54 -84.98 -0.56 6.06 16 10 C -0.27 -6.36 9.76 -39.16 -0.38 -6.74 16 11 C -0.03 -0.71 9.60 -39.37 -0.38 -1.09 16 12 C -0.27 -5.77 5.30 -104.46 -0.55 -6.32 16 13 C -0.01 -0.17 5.51 -104.69 -0.58 -0.75 16 14 C -0.08 -1.23 9.53 -39.22 -0.37 -1.61 16 15 C -0.19 -2.69 8.23 -39.45 -0.32 -3.02 16 16 C 0.08 1.16 6.49 -39.06 -0.25 0.90 16 17 O -0.31 -4.05 10.36 -19.10 -0.20 -4.25 16 18 C 0.60 6.83 3.42 101.05 0.35 7.18 16 19 F -0.17 -1.90 15.55 2.25 0.04 -1.86 16 20 F -0.14 -1.42 17.53 2.25 0.04 -1.38 16 21 F -0.17 -1.88 15.55 2.25 0.04 -1.85 16 22 C -0.14 -2.08 9.91 -39.34 -0.39 -2.47 16 23 C 0.13 2.09 6.62 -38.76 -0.26 1.84 16 24 O -0.48 -7.73 12.12 -19.00 -0.23 -7.96 16 25 C 0.16 3.69 9.97 -17.09 -0.17 3.52 16 26 N -0.49 -12.70 7.86 -10.82 -0.08 -12.78 16 27 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 29 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 1.95 8.05 -52.49 -0.42 1.52 16 31 H 0.13 1.60 5.06 -52.49 -0.27 1.33 16 32 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.39 4.70 8.24 45.56 0.38 5.08 16 34 H 0.11 2.23 7.10 -52.49 -0.37 1.85 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -28.08 315.58 -5.85 -33.92 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -1.50 Total: 7.77 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -4.31 Total: -11.85 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.55 Total: -29.82 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.43 Total: -12.21 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.09 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.08 -5.85 -33.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244466245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.227 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds