Wall clock time and date at job start Tue Mar 31 2020 14:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47252 * 274.98896 * 3 2 1 5 5 H 1.48496 * 109.47172 * 34.99115 * 3 2 1 6 6 H 1.48498 * 109.46775 * 154.98782 * 3 2 1 7 7 C 1.40041 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99892 * 186.30268 * 7 2 1 9 9 C 1.40885 * 120.00465 * 6.30733 * 7 2 1 10 10 C 1.40939 * 119.67039 * 173.66759 * 9 7 2 11 11 C 1.36575 * 119.27118 * 179.97438 * 10 9 7 12 12 C 1.40408 * 118.59852 * 0.02562 * 11 10 9 13 13 C 1.47706 * 120.35648 * 180.02562 * 12 11 10 14 14 C 1.39746 * 120.12534 * 309.70568 * 13 12 11 15 15 C 1.37684 * 119.95953 * 179.73704 * 14 13 12 16 16 C 1.39127 * 120.22130 * 0.51333 * 15 14 13 17 17 O 1.35794 * 119.87222 * 179.73966 * 16 15 14 18 18 C 1.42900 * 116.99855 * 0.02562 * 17 16 15 19 19 F 1.39895 * 109.47254 * 59.99795 * 18 17 16 20 20 F 1.39898 * 109.47252 * 179.97438 * 18 17 16 21 21 F 1.39905 * 109.46984 * 299.99583 * 18 17 16 22 22 C 1.38758 * 120.25769 * 359.75945 * 16 15 14 23 23 C 1.38370 * 120.03749 * 359.97438 * 22 16 15 24 24 O 1.35765 * 120.11134 * 180.02562 * 23 22 16 25 25 C 1.40235 * 119.29381 * 359.97438 * 12 11 10 26 26 N 1.31159 * 120.66332 * 0.02562 * 25 12 11 27 27 H 0.96998 * 120.00244 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.36307 * 359.96255 * 10 9 7 29 29 H 1.07993 * 120.69971 * 179.97438 * 11 10 9 30 30 H 1.07998 * 120.01875 * 359.96917 * 14 13 12 31 31 H 1.08001 * 119.88424 * 180.22682 * 15 14 13 32 32 H 1.08009 * 119.97966 * 180.02562 * 22 16 15 33 33 H 0.96702 * 113.99976 * 269.97731 * 24 23 22 34 34 H 1.07999 * 119.66696 * 180.28028 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3835 2.1074 -1.3948 5 1 1.4957 2.6199 0.8028 6 1 3.5877 1.4120 0.5920 7 6 2.0077 -1.2128 -0.0005 8 1 3.0828 -1.2157 0.1021 9 6 1.3097 -2.4292 -0.1351 10 6 2.0278 -3.6345 -0.2694 11 6 1.3429 -4.8090 -0.3988 12 6 -0.0607 -4.7726 -0.3939 13 6 -0.8403 -6.0196 -0.5307 14 6 -0.5552 -6.9151 -1.5650 15 6 -1.2805 -8.0792 -1.6861 16 6 -2.3045 -8.3629 -0.7880 17 8 -3.0187 -9.5106 -0.9172 18 6 -2.6635 -10.3777 -1.9960 19 9 -1.3309 -10.7784 -1.8529 20 9 -3.4929 -11.5043 -1.9813 21 9 -2.8188 -9.6997 -3.2099 22 6 -2.5990 -7.4775 0.2391 23 6 -1.8733 -6.3071 0.3740 24 8 -2.1599 -5.4401 1.3786 25 6 -0.7146 -3.5396 -0.2565 26 7 -0.0285 -2.4285 -0.1342 27 1 -0.4850 0.8400 0.0004 28 1 3.1077 -3.6293 -0.2702 29 1 1.8698 -5.7458 -0.5036 30 1 0.2359 -6.6959 -2.2666 31 1 -1.0567 -8.7721 -2.4837 32 1 -3.3946 -7.7025 0.9340 33 1 -2.8182 -4.7713 1.1452 34 1 -1.7940 -3.5051 -0.2474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244466245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:40 Heat of formation + Delta-G solvation = -195.910695 kcal Electronic energy + Delta-G solvation = -26317.773482 eV Core-core repulsion = 21765.232324 eV Total energy + Delta-G solvation = -4552.541158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.47461 -49.19015 -49.06159 -41.47685 -40.23745 -39.26141 -37.13232 -35.60193 -33.22529 -32.36705 -31.34656 -30.08619 -27.65997 -26.61754 -24.27221 -23.95234 -23.33185 -22.28536 -20.96845 -20.18719 -20.08969 -19.42688 -18.72683 -17.70928 -17.31824 -17.27132 -16.68505 -16.28869 -16.06275 -15.87943 -15.84334 -15.64510 -15.49394 -15.42038 -15.27167 -15.13442 -14.88289 -14.66446 -14.41221 -14.13188 -13.94835 -13.54041 -12.99306 -12.79695 -12.78573 -12.65938 -12.56107 -12.34152 -11.82560 -11.47664 -11.22649 -10.26900 -9.97733 -9.88240 -9.51172 -8.96629 -8.34734 -6.50595 -0.05980 0.17185 0.41998 0.91801 1.21369 1.41374 1.53253 1.55617 1.76814 2.21187 2.44495 2.74062 2.82594 2.96073 3.28953 3.61090 3.81309 3.91582 3.98435 4.11287 4.17438 4.36627 4.44108 4.82151 4.87182 4.93085 4.94837 5.11532 5.15801 5.22492 5.38932 5.50615 5.68838 5.78996 5.92437 6.11214 6.24535 6.67736 6.81346 6.92834 8.15303 8.38528 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.034269 B = 0.002563 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.860416 B =10923.574314 C =11250.950137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.455 4.455 8 H 0.091 0.909 9 C 0.222 3.778 10 C -0.289 4.289 11 C -0.039 4.039 12 C -0.255 4.255 13 C -0.044 4.044 14 C -0.071 4.071 15 C -0.189 4.189 16 C 0.094 3.906 17 O -0.313 6.313 18 C 0.608 3.392 19 F -0.165 7.165 20 F -0.129 7.129 21 F -0.164 7.164 22 C -0.143 4.143 23 C 0.132 3.868 24 O -0.496 6.496 25 C 0.142 3.858 26 N -0.521 5.521 27 H 0.282 0.718 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.405 0.595 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -14.875 -3.842 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.200 4.200 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.311 4.311 11 C -0.062 4.062 12 C -0.260 4.260 13 C -0.045 4.045 14 C -0.090 4.090 15 C -0.207 4.207 16 C 0.052 3.948 17 O -0.233 6.233 18 C 0.518 3.482 19 F -0.147 7.147 20 F -0.110 7.110 21 F -0.146 7.146 22 C -0.162 4.162 23 C 0.087 3.913 24 O -0.309 6.309 25 C -0.025 4.025 26 N -0.233 5.233 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.176 0.824 33 H 0.264 0.736 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.403 -14.315 -3.341 16.034 hybrid contribution 0.505 -0.025 -0.523 0.728 sum -5.898 -14.341 -3.864 15.981 Atomic orbital electron populations 1.70214 1.08909 1.29445 1.28083 1.27043 0.95774 1.04653 0.92560 0.85101 0.79138 0.75609 0.79335 1.18805 1.19139 1.17803 1.20027 0.95458 0.90745 1.42300 0.89096 1.19051 0.88961 0.93198 0.88960 1.21565 0.99550 0.93921 1.16058 1.20913 0.93177 0.97145 0.94979 1.19060 0.93252 0.92858 1.20822 1.19269 0.96471 0.94459 0.94339 1.21074 0.99107 0.92188 0.96590 1.21513 0.97731 1.00314 1.01146 1.18430 0.93600 0.85020 0.97723 1.86330 1.58190 1.31286 1.47543 1.19241 0.74568 0.77577 0.76832 1.93306 1.35207 1.90944 1.95199 1.93311 1.72265 1.49434 1.95988 1.93311 1.95187 1.80057 1.46042 1.20520 1.03121 0.93717 0.98873 1.18234 0.94668 0.90518 0.87925 1.84755 1.64988 1.45350 1.35769 1.22918 0.99087 0.87969 0.92494 1.68708 1.07795 1.27723 1.19082 0.90744 0.87172 0.85826 0.84107 0.83560 0.82429 0.73560 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.91 11.47 21.84 0.25 -38.66 16 2 C 0.02 1.12 5.49 85.29 0.47 1.59 16 3 Si 0.99 36.76 29.57 68.60 2.03 38.79 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.45 -24.05 9.11 23.36 0.21 -23.84 16 8 H 0.09 4.48 7.86 -2.91 -0.02 4.46 16 9 C 0.22 12.02 6.54 40.15 0.26 12.28 16 10 C -0.29 -13.82 9.76 22.54 0.22 -13.60 16 11 C -0.04 -1.64 9.60 22.41 0.22 -1.43 16 12 C -0.25 -10.61 5.30 -19.76 -0.10 -10.71 16 13 C -0.04 -1.49 5.51 -19.91 -0.11 -1.60 16 14 C -0.07 -2.07 9.53 22.50 0.21 -1.85 16 15 C -0.19 -4.75 8.23 22.35 0.18 -4.57 16 16 C 0.09 2.38 6.49 22.61 0.15 2.53 16 17 O -0.31 -7.08 10.36 -91.24 -0.95 -8.03 16 18 C 0.61 11.82 3.42 113.37 0.39 12.20 16 19 F -0.16 -3.23 15.55 44.97 0.70 -2.53 16 20 F -0.13 -2.29 17.53 44.97 0.79 -1.50 16 21 F -0.16 -3.19 15.55 44.97 0.70 -2.49 16 22 C -0.14 -3.73 9.91 22.43 0.22 -3.50 16 23 C 0.13 4.05 6.62 22.80 0.15 4.20 16 24 O -0.50 -15.33 12.12 -90.91 -1.10 -16.43 16 25 C 0.14 6.52 9.97 85.28 0.85 7.37 16 26 N -0.52 -28.12 7.86 -188.14 -1.48 -29.60 16 27 H 0.28 13.19 8.29 -92.71 -0.77 12.42 16 28 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.14 3.80 8.05 -2.91 -0.02 3.78 16 31 H 0.15 3.14 5.06 -2.91 -0.01 3.12 16 32 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.41 9.39 8.24 -74.06 -0.61 8.78 16 34 H 0.13 5.31 7.10 -2.91 -0.02 5.28 16 Total: -1.00 -61.68 315.58 4.85 -56.83 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.59 Total: 24.56 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.32 Total: -20.93 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.23 Total: -68.26 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -2.05 Total: -24.46 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 2.19 Total: -6.52 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -61.68 4.85 -56.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244466245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.084 kcal (2) G-P(sol) polarization free energy of solvation -61.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds