Wall clock time and date at job start Tue Mar 31 2020 14:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30720 * 1 3 3 Si 1.86794 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47349 * 299.99535 * 3 2 1 6 6 H 1.48499 * 109.47418 * 59.99287 * 3 2 1 7 7 C 1.40134 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00189 * 194.26975 * 7 2 1 9 9 C 1.40822 * 119.99398 * 14.27080 * 7 2 1 10 10 C 1.41151 * 121.11893 * 24.39062 * 9 7 2 11 11 C 1.36397 * 119.12467 * 180.02562 * 10 9 7 12 12 N 1.32272 * 121.54530 * 359.97438 * 11 10 9 13 13 C 1.31599 * 122.52832 * 359.72575 * 12 11 10 14 14 C 1.39492 * 120.63149 * 0.53972 * 13 12 11 15 15 C 1.47582 * 120.79766 * 179.75457 * 14 13 12 16 16 C 1.39798 * 120.13152 * 64.72070 * 15 14 13 17 17 C 1.37668 * 119.95401 * 180.02562 * 16 15 14 18 18 C 1.39141 * 120.22747 * 0.25312 * 17 16 15 19 19 O 1.35790 * 119.86764 * 179.72012 * 18 17 16 20 20 C 1.42902 * 116.99481 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47332 * 59.99622 * 20 19 18 22 22 F 1.39903 * 109.46836 * 179.97438 * 20 19 18 23 23 F 1.39901 * 109.47235 * 299.99385 * 20 19 18 24 24 C 1.38763 * 120.26695 * 359.49184 * 18 17 16 25 25 C 1.38366 * 120.04137 * 0.50501 * 24 18 17 26 26 O 1.35755 * 120.11438 * 179.72498 * 25 24 18 27 27 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.43858 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.22592 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.68402 * 180.29939 * 13 12 11 31 31 H 1.07993 * 120.02284 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.88213 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.98357 * 180.27878 * 24 18 17 34 34 H 0.96703 * 114.00184 * 270.02237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7012 1.3464 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8823 2.3965 1.2124 7 6 2.0079 -1.2135 0.0005 8 1 3.0628 -1.2278 0.2311 9 6 1.3364 -2.4144 -0.2996 10 6 0.1567 -2.4164 -1.0745 11 6 -0.4610 -3.6031 -1.3403 12 7 0.0200 -4.7498 -0.8894 13 6 1.1175 -4.8216 -0.1667 14 6 1.8248 -3.6668 0.1680 15 6 3.0530 -3.7425 0.9827 16 6 4.1857 -4.3940 0.4858 17 6 5.3293 -4.4629 1.2491 18 6 5.3608 -3.8906 2.5170 19 8 6.4909 -3.9678 3.2659 20 6 7.6062 -4.6498 2.6887 21 9 7.9832 -4.0079 1.5043 22 9 8.6778 -4.6353 3.5880 23 9 7.2496 -5.9733 2.4088 24 6 4.2436 -3.2372 3.0173 25 6 3.0883 -3.1613 2.2596 26 8 1.9926 -2.5272 2.7499 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2520 -1.4905 -1.4514 29 1 -1.3640 -3.6065 -1.9327 30 1 1.4718 -5.7833 0.1736 31 1 4.1634 -4.8436 -0.4958 32 1 6.2036 -4.9668 0.8642 33 1 4.2745 -2.7907 4.0002 34 1 1.3939 -3.1027 3.2453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244468939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:48 Heat of formation + Delta-G solvation = -184.289782 kcal Electronic energy + Delta-G solvation = -27226.307081 eV Core-core repulsion = 22674.269843 eV Total energy + Delta-G solvation = -4552.037238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.47893 -48.22129 -48.05297 -40.12819 -38.73483 -37.68928 -35.64097 -34.21858 -31.84572 -30.34370 -29.79179 -28.04662 -26.23592 -25.59870 -23.00251 -22.44803 -21.49019 -20.63619 -19.68577 -19.17801 -19.01485 -17.69073 -17.31269 -16.13317 -15.91249 -15.61924 -15.25855 -15.14771 -14.88622 -14.57242 -14.52663 -14.47769 -14.34581 -14.30927 -14.13820 -13.90999 -13.42587 -13.36926 -12.90531 -12.62445 -12.26226 -11.98274 -11.52931 -11.45575 -11.28746 -11.20274 -10.97475 -10.35417 -10.19335 -9.82424 -9.51471 -8.59483 -8.34928 -8.06550 -7.83347 -7.47725 -6.90715 -4.64427 1.42794 1.51450 1.56144 2.61311 2.75802 2.83081 2.99321 3.05177 3.20466 3.76362 3.80147 3.81145 4.04019 4.58092 4.69581 4.89533 5.11101 5.35503 5.51970 5.58414 5.77409 5.80512 6.18016 6.23347 6.32355 6.52503 6.61336 6.79586 6.83610 6.92974 7.12143 7.14000 7.29797 7.43318 7.77859 8.02823 8.23524 8.38419 8.64569 8.68966 9.55997 9.95860 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.004308 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.232981 B = 6498.176521 C = 7669.977326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.080 3.920 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.080 0.920 9 C 0.153 3.847 10 C -0.208 4.208 11 C 0.080 3.920 12 N -0.582 5.582 13 C 0.130 3.870 14 C -0.243 4.243 15 C -0.009 4.009 16 C -0.072 4.072 17 C -0.199 4.199 18 C 0.089 3.911 19 O -0.312 6.312 20 C 0.604 3.396 21 F -0.166 7.166 22 F -0.138 7.138 23 F -0.167 7.167 24 C -0.156 4.156 25 C 0.158 3.842 26 O -0.464 6.464 27 H 0.284 0.716 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -4.699 5.182 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.446 4.446 8 H 0.098 0.902 9 C 0.145 3.855 10 C -0.231 4.231 11 C -0.067 4.067 12 N -0.296 5.296 13 C -0.028 4.028 14 C -0.249 4.249 15 C -0.010 4.010 16 C -0.091 4.091 17 C -0.217 4.217 18 C 0.047 3.953 19 O -0.232 6.232 20 C 0.513 3.487 21 F -0.148 7.148 22 F -0.119 7.119 23 F -0.149 7.149 24 C -0.175 4.175 25 C 0.112 3.888 26 O -0.273 6.273 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.629 -4.733 4.849 11.774 hybrid contribution 0.893 1.129 0.378 1.488 sum 10.522 -3.604 5.227 12.289 Atomic orbital electron populations 1.69748 1.07735 1.29621 1.32855 1.25991 0.94741 1.01639 0.91718 0.86229 0.81190 0.80565 0.78748 1.18165 1.19531 1.19630 1.19476 0.96976 0.90287 1.37863 0.90206 1.17655 0.90103 0.91049 0.86673 1.21970 0.99740 0.98299 1.03049 1.21694 0.98146 0.88893 0.97928 1.67300 1.15373 1.29233 1.17730 1.22055 0.91236 0.95429 0.94115 1.19248 1.00119 0.95158 1.10390 1.19170 0.94142 0.94663 0.93069 1.21042 0.90737 0.98200 0.99097 1.21297 1.00849 1.05601 0.93965 1.18370 0.84094 1.01719 0.91082 1.86332 1.20354 1.72471 1.44086 1.19344 0.79117 0.75723 0.74543 1.93301 1.91662 1.81771 1.48049 1.93280 1.53875 1.96250 1.68514 1.93291 1.91623 1.36686 1.93291 1.20452 0.91280 1.03837 1.01929 1.18228 0.87006 0.92396 0.91148 1.84942 1.32880 1.36115 1.73317 0.90517 0.85403 0.86573 0.86361 0.85081 0.85542 0.84653 0.76181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.66 10.80 55.56 0.60 -18.06 16 2 C 0.08 1.89 5.25 -17.31 -0.09 1.80 16 3 Si 0.91 18.09 29.58 -169.99 -5.03 13.06 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.42 -10.30 7.55 -37.89 -0.29 -10.58 16 8 H 0.08 2.00 7.18 -52.49 -0.38 1.63 16 9 C 0.15 3.78 5.45 -106.24 -0.58 3.20 16 10 C -0.21 -5.12 8.73 -39.14 -0.34 -5.46 16 11 C 0.08 1.86 11.08 -18.03 -0.20 1.66 16 12 N -0.58 -13.52 10.31 -13.34 -0.14 -13.66 16 13 C 0.13 2.83 10.92 -17.18 -0.19 2.65 16 14 C -0.24 -5.41 5.00 -104.05 -0.52 -5.93 16 15 C -0.01 -0.17 4.50 -104.71 -0.47 -0.64 16 16 C -0.07 -1.24 9.74 -39.21 -0.38 -1.62 16 17 C -0.20 -3.08 8.23 -39.45 -0.32 -3.41 16 18 C 0.09 1.40 6.49 -39.05 -0.25 1.15 16 19 O -0.31 -4.46 10.36 -19.08 -0.20 -4.66 16 20 C 0.60 7.46 3.42 101.05 0.35 7.81 16 21 F -0.17 -2.10 15.55 2.25 0.04 -2.07 16 22 F -0.14 -1.56 17.53 2.25 0.04 -1.52 16 23 F -0.17 -2.01 15.55 2.25 0.04 -1.98 16 24 C -0.16 -2.54 9.91 -39.34 -0.39 -2.93 16 25 C 0.16 2.90 6.06 -38.74 -0.23 2.67 16 26 O -0.46 -8.71 12.12 -18.98 -0.23 -8.94 16 27 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 28 H 0.13 3.21 6.13 -52.49 -0.32 2.88 16 29 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 30 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.13 1.73 5.06 -52.49 -0.27 1.47 16 33 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.38 5.46 9.06 45.56 0.41 5.87 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -27.17 313.41 -5.45 -32.63 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -1.38 Total: 10.11 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.91 Total: -9.64 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.46 Total: -31.72 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.43 Total: -13.60 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.17 -5.45 -32.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244468939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.664 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds