Wall clock time and date at job start Tue Mar 31 2020 14:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30720 * 1 3 3 Si 1.86794 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47408 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47349 * 299.99535 * 3 2 1 6 6 H 1.48499 * 109.47418 * 59.99287 * 3 2 1 7 7 C 1.40134 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00189 * 194.26975 * 7 2 1 9 9 C 1.40822 * 119.99398 * 14.27080 * 7 2 1 10 10 C 1.41151 * 121.11893 * 24.39062 * 9 7 2 11 11 C 1.36397 * 119.12467 * 180.02562 * 10 9 7 12 12 N 1.32272 * 121.54530 * 359.97438 * 11 10 9 13 13 C 1.31599 * 122.52832 * 359.72575 * 12 11 10 14 14 C 1.39492 * 120.63149 * 0.53972 * 13 12 11 15 15 C 1.47582 * 120.79766 * 179.75457 * 14 13 12 16 16 C 1.39798 * 120.13152 * 64.72070 * 15 14 13 17 17 C 1.37668 * 119.95401 * 180.02562 * 16 15 14 18 18 C 1.39141 * 120.22747 * 0.25312 * 17 16 15 19 19 O 1.35790 * 119.86764 * 179.72012 * 18 17 16 20 20 C 1.42902 * 116.99481 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47332 * 59.99622 * 20 19 18 22 22 F 1.39903 * 109.46836 * 179.97438 * 20 19 18 23 23 F 1.39901 * 109.47235 * 299.99385 * 20 19 18 24 24 C 1.38763 * 120.26695 * 359.49184 * 18 17 16 25 25 C 1.38366 * 120.04137 * 0.50501 * 24 18 17 26 26 O 1.35755 * 120.11438 * 179.72498 * 25 24 18 27 27 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.43858 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.22592 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.68402 * 180.29939 * 13 12 11 31 31 H 1.07993 * 120.02284 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.88213 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.98357 * 180.27878 * 24 18 17 34 34 H 0.96703 * 114.00184 * 270.02237 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7012 1.3464 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8823 2.3965 1.2124 7 6 2.0079 -1.2135 0.0005 8 1 3.0628 -1.2278 0.2311 9 6 1.3364 -2.4144 -0.2996 10 6 0.1567 -2.4164 -1.0745 11 6 -0.4610 -3.6031 -1.3403 12 7 0.0200 -4.7498 -0.8894 13 6 1.1175 -4.8216 -0.1667 14 6 1.8248 -3.6668 0.1680 15 6 3.0530 -3.7425 0.9827 16 6 4.1857 -4.3940 0.4858 17 6 5.3293 -4.4629 1.2491 18 6 5.3608 -3.8906 2.5170 19 8 6.4909 -3.9678 3.2659 20 6 7.6062 -4.6498 2.6887 21 9 7.9832 -4.0079 1.5043 22 9 8.6778 -4.6353 3.5880 23 9 7.2496 -5.9733 2.4088 24 6 4.2436 -3.2372 3.0173 25 6 3.0883 -3.1613 2.2596 26 8 1.9926 -2.5272 2.7499 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2520 -1.4905 -1.4514 29 1 -1.3640 -3.6065 -1.9327 30 1 1.4718 -5.7833 0.1736 31 1 4.1634 -4.8436 -0.4958 32 1 6.2036 -4.9668 0.8642 33 1 4.2745 -2.7907 4.0002 34 1 1.3939 -3.1027 3.2453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244468939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:47 Heat of formation + Delta-G solvation = -200.346365 kcal Electronic energy + Delta-G solvation = -27227.003346 eV Core-core repulsion = 22674.269843 eV Total energy + Delta-G solvation = -4552.733503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.46193 -49.17835 -49.04622 -41.42717 -40.25689 -39.19442 -37.00088 -35.99834 -33.41754 -32.03567 -31.21539 -29.55515 -27.85427 -26.86264 -24.44522 -23.78419 -23.21519 -22.16337 -20.90968 -20.17396 -20.05884 -19.45843 -18.61971 -17.59428 -17.28117 -17.18086 -16.53763 -16.32604 -16.22182 -16.04831 -15.85063 -15.60965 -15.48268 -15.41075 -15.20715 -15.10688 -14.80040 -14.60338 -14.46153 -14.25806 -14.01436 -13.53977 -13.15878 -12.93897 -12.87332 -12.59926 -12.50631 -11.96907 -11.76692 -11.44051 -11.25537 -10.02703 -9.90374 -9.82294 -9.56270 -9.06217 -8.64393 -6.47774 0.06708 0.24853 0.44027 0.90763 1.02414 1.36722 1.49122 1.54258 1.78018 2.16631 2.52066 2.75851 2.79762 2.97787 3.39578 3.63753 3.72852 3.91346 3.99504 4.14124 4.18942 4.45859 4.57173 4.88918 4.98523 5.01452 5.04268 5.21671 5.24261 5.28429 5.52637 5.54406 5.65312 5.85376 5.98838 6.23278 6.55476 6.83607 6.87418 6.97752 7.76681 8.23129 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.004308 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.232981 B = 6498.176521 C = 7669.977326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.045 3.955 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.435 4.435 8 H 0.069 0.931 9 C 0.128 3.872 10 C -0.231 4.231 11 C 0.077 3.923 12 N -0.592 5.592 13 C 0.122 3.878 14 C -0.234 4.234 15 C -0.041 4.041 16 C -0.069 4.069 17 C -0.194 4.194 18 C 0.099 3.901 19 O -0.315 6.315 20 C 0.609 3.391 21 F -0.166 7.166 22 F -0.129 7.129 23 F -0.162 7.162 24 C -0.156 4.156 25 C 0.152 3.848 26 O -0.485 6.485 27 H 0.291 0.709 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -5.031 5.833 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.087 0.913 9 C 0.120 3.880 10 C -0.254 4.254 11 C -0.071 4.071 12 N -0.307 5.307 13 C -0.035 4.035 14 C -0.239 4.239 15 C -0.042 4.042 16 C -0.087 4.087 17 C -0.212 4.212 18 C 0.057 3.943 19 O -0.235 6.235 20 C 0.518 3.482 21 F -0.148 7.148 22 F -0.110 7.110 23 F -0.144 7.144 24 C -0.175 4.175 25 C 0.107 3.893 26 O -0.296 6.296 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 11.314 -5.095 5.513 13.578 hybrid contribution 0.451 1.115 0.251 1.228 sum 11.765 -3.980 5.764 13.692 Atomic orbital electron populations 1.69779 1.08779 1.30774 1.33373 1.26670 0.95400 1.04175 0.91087 0.85324 0.79493 0.76927 0.79135 1.18646 1.18466 1.19089 1.19477 0.96513 0.91202 1.39357 0.91298 1.17996 0.90574 0.92299 0.87113 1.21953 1.00692 0.98354 1.04385 1.21980 0.98683 0.88552 0.97872 1.67365 1.16033 1.29080 1.18238 1.22499 0.90754 0.96598 0.93672 1.19477 1.00746 0.94326 1.09377 1.19162 0.94091 0.97280 0.93685 1.21120 0.90472 0.97479 0.99646 1.21466 1.00901 1.05212 0.93672 1.18411 0.84347 1.00554 0.91010 1.86322 1.20342 1.72697 1.44119 1.19234 0.78751 0.75621 0.74585 1.93307 1.91587 1.81828 1.48055 1.93308 1.53247 1.96192 1.68243 1.93305 1.91593 1.36289 1.93243 1.20533 0.90735 1.03769 1.02494 1.18300 0.87516 0.92326 0.91181 1.84889 1.33640 1.37344 1.73720 0.89770 0.86649 0.84582 0.83635 0.84108 0.83491 0.82912 0.74448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.27 10.80 21.86 0.24 -39.04 16 2 C 0.05 2.15 5.25 85.32 0.45 2.60 16 3 Si 0.97 37.10 29.58 68.60 2.03 39.12 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.44 -21.94 7.55 23.36 0.18 -21.77 16 8 H 0.07 3.52 7.18 -2.92 -0.02 3.50 16 9 C 0.13 6.44 5.45 -20.91 -0.11 6.33 16 10 C -0.23 -11.65 8.73 22.56 0.20 -11.45 16 11 C 0.08 3.58 11.08 84.20 0.93 4.52 16 12 N -0.59 -27.31 10.31 -196.12 -2.02 -29.33 16 13 C 0.12 5.24 10.92 85.03 0.93 6.17 16 14 C -0.23 -10.41 5.00 -19.49 -0.10 -10.51 16 15 C -0.04 -1.56 4.50 -19.92 -0.09 -1.65 16 16 C -0.07 -2.25 9.74 22.51 0.22 -2.03 16 17 C -0.19 -5.55 8.23 22.35 0.18 -5.37 16 18 C 0.10 2.87 6.49 22.61 0.15 3.02 16 19 O -0.31 -8.11 10.36 -91.20 -0.95 -9.06 16 20 C 0.61 13.31 3.42 113.37 0.39 13.70 16 21 F -0.17 -3.74 15.55 44.97 0.70 -3.05 16 22 F -0.13 -2.55 17.53 44.97 0.79 -1.76 16 23 F -0.16 -3.43 15.55 44.97 0.70 -2.73 16 24 C -0.16 -4.83 9.91 22.43 0.22 -4.60 16 25 C 0.15 5.49 6.06 22.81 0.14 5.63 16 26 O -0.49 -18.23 12.12 -90.81 -1.10 -19.33 16 27 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 28 H 0.12 6.00 6.13 -2.91 -0.02 5.98 16 29 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 30 H 0.15 5.32 8.06 -2.91 -0.02 5.30 16 31 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.57 5.06 -2.91 -0.01 3.55 16 33 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.40 11.40 9.06 -74.06 -0.67 10.72 16 Total: -1.00 -57.47 313.41 4.60 -52.88 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.53 Total: 27.71 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 3.68 Total: -15.41 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -1.79 Total: -68.37 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.05 Total: -28.39 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 2.19 Total: -7.54 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.12 kcal Total: -57.47 4.60 -52.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244468939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.469 kcal (2) G-P(sol) polarization free energy of solvation -57.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds